mRNA_H-elongata_contig60893.13628.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: D8LN95_ECTSI (RPN1_RPN2_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN95_ECTSI) HSP 1 Score: 357 bits (917), Expect = 5.130e-117 Identity = 189/242 (78.10%), Postives = 210/242 (86.78%), Query Frame = 1
Query: 1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDD---DGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
MTMA+PG RVSL++KL GTKGDLGRWGHEFLRSLAGEIGQEY+ARR + A++E + G G EAM D G+ADV DLM LVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLL+ PYVD+KNYERVCLYLLRMADYMSDPDDL EMM+TAFELYRM+GK+CDAVRVAL MDD D LAQLLAECED + QQMSF+M RHR+SYEHPDDDD+N+IIGNG+LSEHYLAL RDLDVM+AK
Sbjct: 195 MTMADPGSRVSLKYKLVGTKGDLGRWGHEFLRSLAGEIGQEYSARR---IGAVKEGAD-GEGDEAMADAAGGGDADVSDLMALVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLDLPYVDDKNYERVCLYLLRMADYMSDPDDLM----EMMTTAFELYRMRGKYCDAVRVALRMDDSDLLAQLLAECEDKGMTQQMSFIMARHRASYEHPDDDDVNEIIGNGSLSEHYLALARDLDVMEAK 428
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A6H5K5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T2_9PHAE) HSP 1 Score: 354 bits (908), Expect = 1.970e-112 Identity = 189/241 (78.42%), Postives = 208/241 (86.31%), Query Frame = 1
Query: 1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDD--DGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
MTMA+PG RVSL++KLEGTKGDLGRWGHEFLRSLAGEIGQEY+ARR I A E A+ G G E M D EADV DL+ LVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLL+ PYVD+KNYERVCLYLLRMADYMSDPDDL EMM+TAFELYRM+GK+CDAVRVAL MDD D LAQLLAECED + QQMSF+M RHR+SYEHPDDD++N+IIGNG+LSEHYLAL RDLDVM+AK
Sbjct: 191 MTMADPGSRVSLKYKLEGTKGDLGRWGHEFLRSLAGEIGQEYSARR--IGAVTEGAD--GEGDEEMADAAGAEADVSDLIALVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLDLPYVDDKNYERVCLYLLRMADYMSDPDDLM----EMMTTAFELYRMRGKYCDAVRVALRMDDSDLLAQLLAECEDKGMTQQMSFIMARHRASYEHPDDDEVNEIIGNGSLSEHYLALARDLDVMEAK 423
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A836CK10_9STRA (26S proteasome non-ATPase regulatory subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK10_9STRA) HSP 1 Score: 293 bits (751), Expect = 5.450e-90 Identity = 154/239 (64.44%), Postives = 187/239 (78.24%), Query Frame = 1
Query: 1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
MT A PG R SLR+KL G +LG+WGHEFLR+LAG+IG+EY+AR EA G G EA +D E DV DLM LVD+IVPFHLQHNAEAEAVDLLVEVQRL KLLE P+VD+KNYERVCLYLLRMADYMSDPDDL + M+ A LYR++G++ +A+RVAL +D QD +A+L AECED VR+QM+ ++GRHRSSY HP+DD IN+++GN LS+H+LAL RDLDVM+AK
Sbjct: 147 MTTAAPGARDSLRYKLAGNVKELGQWGHEFLRTLAGQIGEEYSARITG------EAPAGGEG-EAKPEDEEPDVSDLMVLVDEIVPFHLQHNAEAEAVDLLVEVQRLPKLLELPFVDDKNYERVCLYLLRMADYMSDPDDLAS----MLEVAHRLYRLRGRYVEALRVALRLDRQDEIAELFAECEDGAVRKQMALLLGRHRSSYTHPEDDAINELVGNAALSDHFLALARDLDVMEAK 374
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A7S2G4T1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4T1_9STRA) HSP 1 Score: 236 bits (601), Expect = 1.270e-68 Identity = 124/240 (51.67%), Postives = 168/240 (70.00%), Query Frame = 1
Query: 1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDD-RVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
MTM PG R +L++KL G + +LG WGHE++R+L+GE+G+EY AR V A + E AMD AD LDLM LVDDIVPFH++HNAEAEAVDLL+EVQ+L KL +DE N+ER+CLYLLR AD+MSDPDDL +EM+ ++ LY Q DA+RVAL + D++++ + + D+ +++QM M+ RHR ++E +DDD+N+IIGN LSEH+L L RDLDVM+ K
Sbjct: 111 MTMGVPGARETLKYKLVGNRSELGSWGHEYIRALSGEVGEEYNARLTAEVKAPADGE-------AMDVSAPADNLDLMALVDDIVPFHVKHNAEAEAVDLLIEVQQLAKLTAIDAIDENNFERICLYLLRSADFMSDPDDL----QEMLQVSYALYLAQKALVDALRVALRIGDEEKVKETMDAASDNVLLKKQMGLMLARHRVNFEEEEDDDLNEIIGNNKLSEHFLHLARDLDVMEPK 339
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A7S2V4A2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A2_9STRA) HSP 1 Score: 233 bits (593), Expect = 2.730e-67 Identity = 130/253 (51.38%), Postives = 171/253 (67.59%), Query Frame = 1
Query: 1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHP--------------YVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
MTM +PG R SL +KLEG + DLG WGHEFLRSLAGEIG+EY++R+ EA D E DV DLMELVD+IVP+H+QHNAEAEAVDLLVEVQ+L KL VD+ N+ R+CLYLLR++ +M +P+DL +EM+ TAFELYR KF DA+RVA+ MDD+D++ L +EC D V++QM++++ RH S E +D++I +IIGN +SE YL L ++LDVM+AK
Sbjct: 134 MTMGKPGDRESLNYKLEGHRTDLGPWGHEFLRSLAGEIGEEYSSRQ-----------------EAAAADAEVDVSDLMELVDEIVPYHVQHNAEAEAVDLLVEVQQLHKLRPAAGQGQGEEGTGKLASVVDKDNHARLCLYLLRLSSFMPEPEDL----QEMLLTAFELYRTHDKFTDALRVAIKMDDRDKVIALFSECTDVLVKKQMAYILARHGYSVELMEDEEITNIIGNNQVSELYLKLAKELDVMEAK 365
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A7R9Z915_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z915_9STRA) HSP 1 Score: 221 bits (563), Expect = 6.600e-67 Identity = 129/259 (49.81%), Postives = 166/259 (64.09%), Query Frame = 1
Query: 1 MTMAEPGGRVSLRFKLEGTKG----------------DLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRV-RQQMSFMMGRHRSSYEHPDDDD---INDIIGNGTLSEHYLALGRDLDVMDAK 717
MTM + R SL+FKL K +LG WGHEF+RSLAGEIGQEY AR + G G D D +A DL+ +VD IVPFH+ HNAEAEAVDLL+EVQRLKKLL +DE NY R+CLYL++ AD+MSDPDD EM+ TAFEL+R Q ++ DA+RVAL M +D + +L ++C DD + ++QM ++ RHR +YE DD+D +N++IGN LSE +L L +DLDVMDAK
Sbjct: 141 MTMGKHEERESLKFKLSAFKDYSALEARGESSRVDDDNLGSWGHEFVRSLAGEIGQEYNARVLD-----------GAG----DPDDDAPFSDLLSMVDVIVPFHVSHNAEAEAVDLLIEVQRLKKLLNLETIDENNYGRICLYLIKTADFMSDPDDYM----EMLETAFELFRKQSQYFDALRVALRMGKEDAIPELFSQCSDDALMKKQMCLLLARHRVNYEVEDDEDEDELNELIGNVQLSEQFLKLAQDLDVMDAK 380
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A662YH41_9STRA (RPN1_RPN2_N domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH41_9STRA) HSP 1 Score: 228 bits (580), Expect = 7.940e-67 Identity = 120/239 (50.21%), Postives = 161/239 (67.36%), Query Frame = 1
Query: 1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
MTMA+ G R SL+FKL G DLG WGHEF+RSLAGE+G+EY AR +D + DV DL+++VD IVPFH+QHNAE EA+D+L+EVQ+L KLL+ P +DEKNY+RVCLYLL +DYMSD DDL +++TAF L+ ++ DA+RVAL + + D + ++ +C+D VR QM +++GR R YE D ND+IGN LS+ +L+L RDLDVM+AK
Sbjct: 122 MTMAKEGSRESLKFKLLGNSTDLGSWGHEFVRSLAGEVGEEYNARL------------------TAEDAVDPDVSDLLKVVDAIVPFHMQHNAEPEAIDILIEVQQLAKLLDSPDIDEKNYQRVCLYLLACSDYMSDVDDLV----NLLNTAFALFLRLEQYPDALRVALRLSNDDLVGEVFQKCQDVAVRNQMGYILGRQRCFYEDESDASANDLIGNAELSDKFLSLARDLDVMEAK 338
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: W7TKW5_9STRA (Armadillo-like helical n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKW5_9STRA) HSP 1 Score: 231 bits (589), Expect = 9.410e-67 Identity = 128/244 (52.46%), Postives = 163/244 (66.80%), Query Frame = 1
Query: 1 MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMD-DQDRLAQLLAECEDDRVRQQMSFMMGRHRSSY----EHPDDDDINDIIGNGTLSEHYLALGRDLDVMDAK 717
MTMA PG R SLRFKLE DLG WGHEF+RSLAGEIG+EY +R D V DL+ LV DIVPFH+QHNA AEAVDLL+EVQRL +LLE VDE NY+R+CLYLLR AD+M+DPDDL +EM+ TA+ELYR QG + DA+RVA+ ++ D R+ QL E D+ ++Q++FM+GR + E D +++N+++GN LSEHYL L +DLDV+D K
Sbjct: 152 MTMATPGSRESLRFKLESNAQDLGSWGHEFVRSLAGEIGEEYVSRTTA--------------------DAPQPVEDLLALVKDIVPFHIQHNAFAEAVDLLLEVQRLPQLLELTSVDEANYQRICLYLLRCADFMADPDDL----QEMLVTAYELYRKQGSYADALRVAIKLNNDMARIHQLFEEVSDETQKRQLAFMVGRSHVNLQYEGEEADAEEVNELVGNSKLSEHYLLLAKDLDVLDPK 371
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A7S2EH43_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EH43_TRICV) HSP 1 Score: 224 bits (570), Expect = 4.520e-66 Identity = 127/259 (49.03%), Postives = 166/259 (64.09%), Query Frame = 1
Query: 1 MTMAEPGGRVSLRFKLEGTKG----------------DLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRV-RQQMSFMMGRHRSSYEHPDD---DDINDIIGNGTLSEHYLALGRDLDVMDAK 717
MTM +P R SL+FKL K +LG WGHEF+RSLAGEIGQEY R + + D + + +DL+ +VD IVPFH+ HNAEAEAVDLL+EVQRLKKLL+ +DE NY R+CLYL++ AD+MSDPDD EM+ TAFEL+R Q ++ DA+RVAL M D ++ L +EC DD + ++QM ++ RHR ++E DD DD+N++IGN LSE +L LG+DLDVMDAK
Sbjct: 141 MTMGKPEERESLKFKLTAFKDYDQLKKRGEAPKVDDDNLGSWGHEFVRSLAGEIGQEYNTRVL----------------DGADPESDVPFVDLLSMVDVIVPFHVSHNAEAEAVDLLIEVQRLKKLLDLDTIDENNYGRICLYLVKTADFMSDPDDYA----EMLETAFELFRKQKQYFDALRVALRMGKDDAVSDLFSECTDDLLMKKQMCLLLARHRVNFEVEDDENEDDLNELIGNAQLSEQFLKLGQDLDVMDAK 379
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Match: A0A7S0GCY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCY1_9STRA) HSP 1 Score: 218 bits (555), Expect = 4.550e-66 Identity = 121/256 (47.27%), Postives = 164/256 (64.06%), Query Frame = 1
Query: 1 MTMAEPGGRVSLRFKLEG----------------TKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVAAMEEAEEAGIGVEAMDDDGEADVLDLMELVDDIVPFHLQHNAEAEAVDLLVEVQRLKKLLEHPYVDEKNYERVCLYLLRMADYMSDPDDLTARIKEMMSTAFELYRMQGKFCDAVRVALCMDDQDRLAQLLAECEDDRVRQQMSFMMGRHRSSYEHPDDDD-INDIIGNGTLSEHYLALGRDLDVMDAK 717
MTM + R SL+FKL G T ++G WGHEF+RSLAGEIGQEY AR + D D ++ D++ +VD IVPFH+ HNAE+EAVDLL+EVQRLK+LL+ +D NY R+CLYL++ AD+MSDPDDL+ EMM TA LYR + + DA+RVAL M + D +++L ECEDD +++QM ++ RH SY++ DDDD +N++IGN LSE +L + +DLDV +AK
Sbjct: 71 MTMGKIEERESLKFKLMGLADYALLKERKVEHSVTDDNMGSWGHEFVRSLAGEIGQEYNARVN----------------DGADPDEDSSFADILGMVDIIVPFHVSHNAESEAVDLLIEVQRLKRLLDIDTIDNTNYRRICLYLVKTADFMSDPDDLS----EMMETALSLYRKKNEHFDALRVALRMGNDDIISELFEECEDDLIKKQMCLLLARHNMSYQYEDDDDDLNELIGNVNLSEQFLKVAQDLDVTEAK 306 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60893.13628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60893.13628.1 >prot_H-elongata_contig60893.13628.1 ID=prot_H-elongata_contig60893.13628.1|Name=mRNA_H-elongata_contig60893.13628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp MTMAEPGGRVSLRFKLEGTKGDLGRWGHEFLRSLAGEIGQEYTARRMKIVback to top mRNA from alignment at H-elongata_contig60893:586..3598- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60893.13628.1 ID=mRNA_H-elongata_contig60893.13628.1|Name=mRNA_H-elongata_contig60893.13628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3013bp|location=Sequence derived from alignment at H-elongata_contig60893:586..3598- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60893:586..3598- >mRNA_H-elongata_contig60893.13628.1 ID=mRNA_H-elongata_contig60893.13628.1|Name=mRNA_H-elongata_contig60893.13628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1434bp|location=Sequence derived from alignment at H-elongata_contig60893:586..3598- (Himanthalia elongata Himel1 dioecious)back to top |