mRNA_H-elongata_contig60507.13595.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Match: D8LFY0_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY0_ECTSI) HSP 1 Score: 275 bits (704), Expect = 1.980e-86 Identity = 124/141 (87.94%), Postives = 132/141 (93.62%), Query Frame = 1
Query: 22 KTVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACSVGEKDLKDLDKEVSRCCKKKQTFDRLLLTKEEALDMFSYNAFKKEYIATKIPDGGCTTVYRNGDFVDLCRGPHVPYSTVIQAFNSTRTSSTNWLGKV 444
+TVFWHSSAHCLG A+E+K GCHLTHGPPVDNGFFYDCYMG +VGEKDLKDLDKEV+RCCK KQTFDRL+LTKEEALDMF YNAFKKEYI T+IPDGG TTVYRNGDFVDLCRGPHVPYST+IQAFNS RTSSTNWLGKV
Sbjct: 224 QTVFWHSSAHCLGFALEKKLGCHLTHGPPVDNGFFYDCYMGGSAVGEKDLKDLDKEVTRCCKAKQTFDRLVLTKEEALDMFDYNAFKKEYINTRIPDGGSTTVYRNGDFVDLCRGPHVPYSTMIQAFNSIRTSSTNWLGKV 364
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Match: A0A835YMV8_9STRA (Threonine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV8_9STRA) HSP 1 Score: 238 bits (608), Expect = 9.370e-72 Identity = 104/140 (74.29%), Postives = 122/140 (87.14%), Query Frame = 1
Query: 22 KTVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACSVGEKDLKDLDKEVSRCCKKKQTFDRLLLTKEEALDMFSYNAFKKEYIATKIPDGGCTTVYRNGDFVDLCRGPHVPYSTVIQAFNSTRTSSTNWLGK 441
+ VFWHSSAHCLG AME +YGCHLTHGPP++ GFFYDCYMG V +KDL DLDK V+ CK+KQTFDRL+L+KEEAL+MF YN FK +YI T+IP+GGCTTVY+NG+F+DLCRGPHVPYST+IQAF +TR SSTNWLGK
Sbjct: 195 QAVFWHSSAHCLGHAMECRYGCHLTHGPPIEQGFFYDCYMGDNVVSDKDLPDLDKHVTAQCKQKQTFDRLVLSKEEALEMFKYNPFKAQYIQTRIPEGGCTTVYKNGEFIDLCRGPHVPYSTMIQAFAATRNSSTNWLGK 334
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Match: H6WB86_VAULI (Threonine--tRNA ligase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB86_VAULI) HSP 1 Score: 223 bits (569), Expect = 4.050e-66 Identity = 98/140 (70.00%), Postives = 116/140 (82.86%), Query Frame = 1
Query: 22 KTVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACSVGEKDLKDLDKEVSRCCKKKQTFDRLLLTKEEALDMFSYNAFKKEYIATKIPDGGCTTVYRNGDFVDLCRGPHVPYSTVIQAFNSTRTSSTNWLGK 441
K VFWHSSAH +G AME KYGCHLTHGPP++ GFFYDCYMG V +KD +L++ V + CKK Q F+RL+LTK+EALDMF YN FK +YI TKIPDG CTTVY+NGDF+DLCRGPHVP ST+IQAF +T+TS+TNWL K
Sbjct: 197 KAVFWHSSAHYMGFAMECKYGCHLTHGPPIEQGFFYDCYMGDNVVSDKDFLNLNQTVMQECKKNQNFERLMLTKDEALDMFKYNPFKVQYIQTKIPDGSCTTVYKNGDFIDLCRGPHVPQSTMIQAFAATKTSATNWLAK 336
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Match: A0A7S2XW11_9STRA (Threonine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW11_9STRA) HSP 1 Score: 193 bits (491), Expect = 1.370e-55 Identity = 84/139 (60.43%), Postives = 105/139 (75.54%), Query Frame = 1
Query: 22 KTVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACSVGEKDLKDLDKEVSRCCKKKQTFDRLLLTKEEALDMFSYNAFKKEYIATKIPDGGCTTVYRNGDFVDLCRGPHVPYSTVIQAFNSTRTSSTNWLG 438
KTVFWHSS+H LG A+E KYGCHLT GPP+ NGF+YDCYMG + +K+ D++K V + KKK F RL+L+KE+AL+MF +N FK I+ KIPD G TTVYRNGD +DLCRGPH+P++ I+ F R SSTNWLG
Sbjct: 210 KTVFWHSSSHVLGCALEEKYGCHLTIGPPLQNGFYYDCYMGEHVISDKEFSDIEKVVQQQVKKKHKFQRLVLSKEDALEMFKFNPFKVSLISNKIPDNGFTTVYRNGDLIDLCRGPHIPHTGKIKGFACARNSSTNWLG 348
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Match: W7TCM5_9STRA (Threonine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCM5_9STRA) HSP 1 Score: 189 bits (480), Expect = 2.810e-53 Identity = 83/140 (59.29%), Postives = 106/140 (75.71%), Query Frame = 1
Query: 22 KTVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACSVGEKDLKDLDKEVSRCCKKKQTFDRLLLTKEEALDMFSYNAFKKEYIATKIPDGGCTTVYRNGDFVDLCRGPHVPYSTVIQAFNSTRTSSTNWLGK 441
K VFWHSSAH LG A+E+K+G HLT GPPV +GF+YDCYMG V D KDL+ V + K+KQ F+RL++TK EAL +F YNAFK I++KIP+GG TTVYRNGD +DLCRGPHVP++ ++AF + + S NWLG+
Sbjct: 198 KAVFWHSSAHMLGQALEKKFGAHLTIGPPVQDGFYYDCYMGEHGVSNTDFKDLEALVGKAAKEKQRFERLVVTKAEALALFKYNAFKTSIISSKIPEGGYTTVYRNGDLIDLCRGPHVPHTGRVRAFAAVKNSGANWLGQ 337
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Match: A0A7S2YSD7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSD7_9STRA) HSP 1 Score: 178 bits (451), Expect = 5.650e-53 Identity = 78/138 (56.52%), Postives = 106/138 (76.81%), Query Frame = 1
Query: 25 TVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACSVGEKDLKDLDKEVSRCCKKKQTFDRLLLTKEEALDMFSYNAFKKEYIATKIPDGGCTTVYRNGDFVDLCRGPHVPYSTVIQAFNSTRTSSTNWLG 438
TVFWHSSAH +G A+E YGC LT GPP+ GF+YD YMG+ S+ + D K +++EV++ K+KQ F+R+++TKEE L++F+ N FK + TK+PDGG TTVYR GD +DLCRGPHVP + ++AF +TR S+TNWLG
Sbjct: 114 TVFWHSSAHMMGEALEHLYGCKLTIGPPLAGGFYYDSYMGSDSIKDDDYKPVEQEVNKIIKQKQKFERMVITKEEGLELFADNPFKVSILTTKVPDGGRTTVYRCGDLIDLCRGPHVPNTGKVKAFAATRHSATNWLG 251
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Match: A0A7S2SGE3_9STRA (Threonine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGE3_9STRA) HSP 1 Score: 186 bits (471), Expect = 3.410e-52 Identity = 83/139 (59.71%), Postives = 107/139 (76.98%), Query Frame = 1
Query: 22 KTVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACSVGEKDLKDLDKEVSRCCKKKQTFDRLLLTKEEALDMFSYNAFKKEYIATKIPDGGCTTVYRNGDFVDLCRGPHVPYSTVIQAFNSTRTSSTNWLG 438
K VFWHSSAH LG A+E +G LT GPP+ NGF+YD YMG ++ D KD+D V + K KQTF+RL++TKEEAL++F+YN FK + I+TK+PDG TTVYRNGD +DLCRGPH+P + +I+AF++ R SSTNWLG
Sbjct: 189 KMVFWHSSAHVLGEALEHTFGSFLTIGPPLANGFYYDSYMGDNTIHPPDFKDVDDAVKKIAKAKQTFERLVVTKEEALELFTYNPFKHQLISTKVPDGSRTTVYRNGDLIDLCRGPHIPSTGMIKAFSTLRGSSTNWLG 327
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Match: A0A067CSB6_SAPPC (Threonine--tRNA ligase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CSB6_SAPPC) HSP 1 Score: 184 bits (468), Expect = 9.830e-52 Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 1
Query: 22 KTVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACSVGEKDLKDLDKEVSRCCKKKQTFDRLLLTKEEALDMFSYNAFKKEYIATKIPDGGCTTVYRNGDFVDLCRGPHVPYSTVIQAFNSTRTSSTNWLGK 441
+ VFWHSSAH LG +E GCHLT GPPV+ GF+YD YMG ++ E +LKD++K + K+KQ F+R++LTKEEAL+MF+ N FK + I+TKIPDGG TT YR G +DLCRGPHVP++ I+AF TRTSST WLGK
Sbjct: 183 RMVFWHSSAHILGEGLELMKGCHLTIGPPVEGGFYYDSYMGENTIAEAELKDIEKRATAVVKEKQAFERIVLTKEEALEMFADNVFKTQIISTKIPDGGRTTAYRCGPLIDLCRGPHVPHTGKIKAFAVTRTSSTYWLGK 322
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Match: A0A7S3DX10_9STRA (Threonine--tRNA ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DX10_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.260e-51 Identity = 78/138 (56.52%), Postives = 106/138 (76.81%), Query Frame = 1
Query: 25 TVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACSVGEKDLKDLDKEVSRCCKKKQTFDRLLLTKEEALDMFSYNAFKKEYIATKIPDGGCTTVYRNGDFVDLCRGPHVPYSTVIQAFNSTRTSSTNWLG 438
TVFWHSSAH +G A+E YGC LT GPP+ GF+YD YMG+ S+ + D K +++EV++ K+KQ F+R+++TKEE L++F+ N FK + TK+PDGG TTVYR GD +DLCRGPHVP + ++AF +TR S+TNWLG
Sbjct: 114 TVFWHSSAHMMGEALEHLYGCKLTIGPPLAGGFYYDSYMGSDSIKDDDYKPVEQEVNKIIKQKQKFERMVITKEEGLELFADNPFKVSILTTKVPDGGRTTVYRCGDLIDLCRGPHVPNTGKVKAFAATRHSATNWLG 251
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Match: A0A485LGS8_9STRA (Threonine--tRNA ligase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LGS8_9STRA) HSP 1 Score: 183 bits (464), Expect = 3.400e-51 Identity = 83/140 (59.29%), Postives = 108/140 (77.14%), Query Frame = 1
Query: 22 KTVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACSVGEKDLKDLDKEVSRCCKKKQTFDRLLLTKEEALDMFSYNAFKKEYIATKIPDGGCTTVYRNGDFVDLCRGPHVPYSTVIQAFNSTRTSSTNWLGK 441
K VFWHSSAH LG +E GCHLT GPPV+ GF+YD YMG +V E +LK+++K+ ++ K+KQ F+R++LTK+EAL++F+ N FK + I+TKIPDGG TT YR G +DLCRGPHVP++ I+AF TRTSST WLGK
Sbjct: 181 KMVFWHSSAHILGEGLELMKGCHLTIGPPVEGGFYYDSYMGDNTVAEHELKEIEKKATQVVKEKQAFERIVLTKDEALELFADNVFKTQIISTKIPDGGKTTAYRCGPLIDLCRGPHVPHTGKIKAFAVTRTSSTYWLGK 320 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60507.13595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60507.13595.1 >prot_H-elongata_contig60507.13595.1 ID=prot_H-elongata_contig60507.13595.1|Name=mRNA_H-elongata_contig60507.13595.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp MLVLYGFKTVFWHSSAHCLGLAMERKYGCHLTHGPPVDNGFFYDCYMGACback to top mRNA from alignment at H-elongata_contig60507:318..2681- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60507.13595.1 ID=mRNA_H-elongata_contig60507.13595.1|Name=mRNA_H-elongata_contig60507.13595.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2364bp|location=Sequence derived from alignment at H-elongata_contig60507:318..2681- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60507:318..2681- >mRNA_H-elongata_contig60507.13595.1 ID=mRNA_H-elongata_contig60507.13595.1|Name=mRNA_H-elongata_contig60507.13595.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig60507:318..2681- (Himanthalia elongata Himel1 dioecious)back to top |