mRNA_H-elongata_contig60393.13579.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60393.13579.1
Unique NamemRNA_H-elongata_contig60393.13579.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 3.840e-52
Identity = 110/201 (54.73%), Postives = 133/201 (66.17%), Query Frame = 1
Query:    1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPN---IETSPVP-AAGQGGPKRPRLNPFKAAAAAHAASSSIAGD--SIGEIRQKMFIIVDVEISAFKTAPGIRVLEV----VGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
            ATALDPR KHLYGI Q E  GVWRAV S AV++AL   + D A      P    ++T P P   GQG  KRPR++ F+AAAA             S  E R+++  IVD+E+SAFK APGIRV ++     G K V+N+PL  WR K+ E+P LA LARRVLAI +SQAQS+R+FST G  VTPTR+RLL ENVELLVYLR
Sbjct:  344 ATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLR 544          
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.480e-42
Identity = 89/170 (52.35%), Postives = 116/170 (68.24%), Query Frame = 1
Query:    1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPNIE---TSPVPAAGQGGPKRPRLNPFKAAAAAHA--ASSSIAGDSIGEIRQKMFIIVDVEISAFKTAPGIRVLEV-VGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRM 492
            ATA+DPR KHLYGI Q E   VWRAV ++AV++A    S D  A   + P  +   T PV   GQG PKR RL+ F+AAAAAHA  A+SS  G ++ E R+++  +VD+E+++F+T PGI +      GK VYNDPL WWRT++ EFP LA LARRVLAI +SQA S+R+
Sbjct:  380 ATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.130e-26
Identity = 82/219 (37.44%), Postives = 107/219 (48.86%), Query Frame = 1
Query:    1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMAL--RNKSDDTAAVPVTTPNIETSPVP-------------------------AAGQGGPKRPRLNPFKAAAAAHAASSSIAGDSIGEIRQKMFIIVDVEISAFKTAPGIRVLEV-VGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
            ATALDPR K LYG+ ++E+  VW+ V  EAV++A+  RN  +   A     P                                 A   GG + P+L+          A SS        +R        VE++AFK + GI++ E    G  VY DPL WWR +  +FP LA LARRVLAI A+QA+S+R+FS  G +VT  RN L P  VELLV LR
Sbjct:   82 ATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLD--------EGADSSFVRLITSSVR--------VELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLR 284          
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.050e-21
Identity = 56/113 (49.56%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  235 AHAASSSIAGDSIGEIRQKMFIIVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
            AH      A  S   +R++M  I+  E+ AFK  PG+ V     G+ V   PL WWR K RE+P LA LARRVL I A QAQS+R+FS+ G +VT TR R+ PENV L+V+LR
Sbjct:  429 AHGDKQQSANASSSPLRRQMESIISREVDAFKITPGLAVSWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLR 541          
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: UPI000CD62F95 (zinc finger BED domain-containing protein 1-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD62F95)

HSP 1 Score: 88.2 bits (217), Expect = 7.180e-18
Identity = 68/200 (34.00%), Postives = 104/200 (52.00%), Query Frame = 1
Query:    1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAV----EMALRNKSDDTAAVPVTTPNIETSPVPAAGQGGPKRPRLNPFKAAAAAHAASSSIAGDSI----GEIRQKM-FIIVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
            A+ALDPRFK +  + +EE+  V+RA+T E      E A R+   D A     T   ETS +  +    PKR         A++ +   S+ G S     G ++ K  ++I   E+ A+  AP + + E         DPL WWR  E  FP L++L++R L I  +   ++R+FST G +VT  R+ L PE+V+ LV+L+
Sbjct:   67 ASALDPRFKGMPFLTEEERLEVYRALTEENASLENECARRSTEVDEAPEGTGTLGEETS-MEDSPSAAPKRK--------ASSSSLLVSLLGQSFTDTEGTVKPKTPYVIAKEEMEAYCKAPSLPLTE---------DPLNWWRVHEVMFPLLSLLSKRYLCIPGTSVSAERVFSTAGDVVTAKRSTLKPEHVDQLVFLK 248          
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A8B8G1F8_9HEMI (zinc finger BED domain-containing protein 1-like n=4 Tax=Aphididae TaxID=27482 RepID=A0A8B8G1F8_9HEMI)

HSP 1 Score: 77.8 bits (190), Expect = 6.560e-15
Identity = 33/62 (53.23%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  385 DPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYL 570
            +PL WWRT+E ++P +A +A++ LAI ++ A S+R FST G +VTP R+ LLPENV++LV+L
Sbjct:   76 NPLEWWRTREEKYPAIATIAKKYLAIPSTSASSERCFSTAGNIVTPKRSCLLPENVDMLVFL 137          
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: UPI000BBD9CAA (zinc finger BED domain-containing protein 1-like n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBD9CAA)

HSP 1 Score: 77.4 bits (189), Expect = 5.600e-14
Identity = 59/194 (30.41%), Postives = 94/194 (48.45%), Query Frame = 1
Query:    1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPNIETSPVPAAGQGGP---KRPRLNPFKAAAAAHAASSSIAGDSIGEIRQKMFIIVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
            ATALDPRFK L  + +     +W  +T E V +  + +    A    ++   E+ P     +  P   K      F       A S+    ++I E           E++++K    I V E         DPL WW+T   ++P +A LA+R LA+  +   S+R+FST G +VT +R+RLLPENV+ L++++
Sbjct:   60 ATALDPRFKSLPYLDEACVQKIWDDLTLEIVNLEEQAQQHCEAQAASSSSAAESEP----SETSPPHKKSAMATVFADFFTTEARSTKPLPETIRE-----------EVTSYKETSCISVDE---------DPLAWWKTNAHKYPHVAKLAQRDLAVPGTSVPSERVFSTAGDIVTASRSRLLPENVDKLIFMQ 229          
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: UPI0005F55F89 (zinc finger BED domain-containing protein 1-like n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F55F89)

HSP 1 Score: 75.9 bits (185), Expect = 3.670e-13
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  286 QKMFIIVDVE--ISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYL 570
            Q M  I DVE    A+ + P +RV           D L WW+T+  +FP LA+LAR+ L+I A+ A ++R FST G +VTP RN L PENV +LV+L
Sbjct:  181 QPMHCINDVESQFQAYLSEPQLRV---------DLDYLEWWKTRADKFPALAILARKYLSIPATSASAERTFSTAGNIVTPKRNCLSPENVNMLVFL 268          
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A3Q2TAZ2_FUNHE (BED-type domain-containing protein n=8 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q2TAZ2_FUNHE)

HSP 1 Score: 77.0 bits (188), Expect = 4.540e-13
Identity = 58/191 (30.37%), Postives = 95/191 (49.74%), Query Frame = 1
Query:    1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPNIETSPVPAAGQGGPKRPRLNPFKAAAAAHAASSSIAGDSIGEIRQKMF-IIVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYL 570
            ++ALDPRFK L  + +EE+  V+  VTSEA  +      +D        P+++ +   +AG   PKR R +    +   HA ++     S   ++ K    I + E+  +   P + + E         DPL WW   +  FP L+ LA+R L I  +    +R+FST G ++T  R+ L P++V+ LV+L
Sbjct:  427 SSALDPRFKRLPFLTEEERLDVYAGVTSEAASL-----EED-------LPSVDDNVSDSAGPSAPKR-RASSLLESLLGHAFNAI----SEPAVQSKTANAIAEEEMELYCRCPAVPLSE---------DPLDWWHRHKGTFPLLSRLAKRYLCIPGTSVSEERVFSTAGDVITAKRSALKPDHVDQLVFL 591          
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Match: A0A6Q2YGN0_ESOLU (BED-type domain-containing protein n=4 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2YGN0_ESOLU)

HSP 1 Score: 76.3 bits (186), Expect = 8.580e-13
Identity = 63/191 (32.98%), Postives = 89/191 (46.60%), Query Frame = 1
Query:    1 ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTPNIETSPVPAAGQGGPKRPRLNPFKAAAAAHAASSSIAGDSIGEIRQKMFIIVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARRVLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR 573
            A+ LDPRFK L  + Q+EQ  V   V +EAV +      +D A VP           P  G  GPKR R  P            S+ G +  +       +V    +        + LE     ++  DPL WWR  E  FP LA LA+R L I  +   S+R+FST G ++T  R+ L PE+V+ L++L+
Sbjct:  487 ASILDPRFKALPFLSQDEQYDVQSKVIAEAVAL------EDYAEVPSG---------PDEGSPGPKR-RCTPTPL--------ESLLGKTFSDAG-----VVPKSSNTRAEEEMKKYLETTSPLSLSEDPLIWWRCHETVFPLLAKLAKRYLCIPGTSVASERVFSTAGDILTAQRSMLTPEHVDQLLFLQ 648          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60393.13579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI3.840e-5254.73Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE1.480e-4252.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI1_9PHAE6.130e-2637.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.050e-2149.56Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI000CD62F957.180e-1834.00zinc finger BED domain-containing protein 1-like n... [more]
A0A8B8G1F8_9HEMI6.560e-1553.23zinc finger BED domain-containing protein 1-like n... [more]
UPI000BBD9CAA5.600e-1430.41zinc finger BED domain-containing protein 1-like n... [more]
UPI0005F55F893.670e-1345.36zinc finger BED domain-containing protein 1-like n... [more]
A0A3Q2TAZ2_FUNHE4.540e-1330.37BED-type domain-containing protein n=8 Tax=Clupeoc... [more]
A0A6Q2YGN0_ESOLU8.580e-1332.98BED-type domain-containing protein n=4 Tax=Esox lu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60393contigH-elongata_contig60393:1654..2226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.8
Seed ortholog evalue7.4e-50
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.2103064-CDS-H-elongata_contig60393:1653..22261622930978.2103064-CDS-H-elongata_contig60393:1653..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60393 1654..2226 +
1691679648.4178548-CDS-H-elongata_contig60393:1653..22261691679648.4178548-CDS-H-elongata_contig60393:1653..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60393 1654..2226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60393.13579.1prot_H-elongata_contig60393.13579.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60393 1654..2226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60393.13579.1

>prot_H-elongata_contig60393.13579.1 ID=prot_H-elongata_contig60393.13579.1|Name=mRNA_H-elongata_contig60393.13579.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
ATALDPRFKHLYGIIQEEQPGVWRAVTSEAVEMALRNKSDDTAAVPVTTP
NIETSPVPAAGQGGPKRPRLNPFKAAAAAHAASSSIAGDSIGEIRQKMFI
IVDVEISAFKTAPGIRVLEVVGGKTVYNDPLGWWRTKEREFPTLAVLARR
VLAILASQAQSKRMFSTVGQMVTPTRNRLLPENVELLVYLR
back to top

mRNA from alignment at H-elongata_contig60393:1654..2226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60393.13579.1 ID=mRNA_H-elongata_contig60393.13579.1|Name=mRNA_H-elongata_contig60393.13579.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at H-elongata_contig60393:1654..2226+ (Himanthalia elongata Himel1 dioecious)
GCAACCGCCCTCGACCCGAGGTTCAAGCATCTCTACGGCATAATCCAGGA GGAACAACCAGGCGTGTGGCGCGCTGTCACCAGCGAAGCAGTGGAGATGG CTCTGAGGAACAAGTCCGACGACACGGCAGCCGTCCCCGTGACAACGCCC AACATTGAGACGTCGCCGGTCCCGGCCGCCGGACAGGGGGGACCGAAGCG GCCTCGCTTGAACCCGTTTAAGGCCGCCGCGGCTGCCCACGCCGCGAGTA GCAGTATCGCTGGGGACTCCATCGGTGAGATTCGGCAGAAAATGTTCATC ATCGTCGATGTGGAGATCTCCGCCTTCAAGACTGCACCTGGCATAAGGGT TTTGGAGGTGGTAGGAGGAAAGACGGTCTACAACGATCCTCTCGGCTGGT GGCGCACCAAGGAACGAGAATTCCCTACCCTGGCCGTACTAGCTCGTCGT GTGCTTGCCATTCTTGCCTCGCAAGCACAATCCAAGCGCATGTTTTCTAC GGTAGGGCAAATGGTAACGCCCACGCGGAATAGACTACTTCCTGAGAACG TAGAGCTTCTCGTGTACTTGCGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig60393:1654..2226+

>mRNA_H-elongata_contig60393.13579.1 ID=mRNA_H-elongata_contig60393.13579.1|Name=mRNA_H-elongata_contig60393.13579.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig60393:1654..2226+ (Himanthalia elongata Himel1 dioecious)
GCAACCGCCCTCGACCCGAGGTTCAAGCATCTCTACGGCATAATCCAGGA
GGAACAACCAGGCGTGTGGCGCGCTGTCACCAGCGAAGCAGTGGAGATGG
CTCTGAGGAACAAGTCCGACGACACGGCAGCCGTCCCCGTGACAACGCCC
AACATTGAGACGTCGCCGGTCCCGGCCGCCGGACAGGGGGGACCGAAGCG
GCCTCGCTTGAACCCGTTTAAGGCCGCCGCGGCTGCCCACGCCGCGAGTA
GCAGTATCGCTGGGGACTCCATCGGTGAGATTCGGCAGAAAATGTTCATC
ATCGTCGATGTGGAGATCTCCGCCTTCAAGACTGCACCTGGCATAAGGGT
TTTGGAGGTGGTAGGAGGAAAGACGGTCTACAACGATCCTCTCGGCTGGT
GGCGCACCAAGGAACGAGAATTCCCTACCCTGGCCGTACTAGCTCGTCGT
GTGCTTGCCATTCTTGCCTCGCAAGCACAATCCAAGCGCATGTTTTCTAC
GGTAGGGCAAATGGTAACGCCCACGCGGAATAGACTACTTCCTGAGAACG
TAGAGCTTCTCGTGTACTTGCGCGCAACCGCCCTCGACCCGAGGTTCAAG
CATCTCTACGGCATAATCCAGGAGGAACAACCAGGCGTGTGGCGCGCTGT
CACCAGCGAAGCAGTGGAGATGGCTCTGAGGAACAAGTCCGACGACACGG
CAGCCGTCCCCGTGACAACGCCCAACATTGAGACGTCGCCGGTCCCGGCC
GCCGGACAGGGGGGACCGAAGCGGCCTCGCTTGAACCCGTTTAAGGCCGC
CGCGGCTGCCCACGCCGCGAGTAGCAGTATCGCTGGGGACTCCATCGGTG
AGATTCGGCAGAAAATGTTCATCATCGTCGATGTGGAGATCTCCGCCTTC
AAGACTGCACCTGGCATAAGGGTTTTGGAGGTGGTAGGAGGAAAGACGGT
CTACAACGATCCTCTCGGCTGGTGGCGCACCAAGGAACGAGAATTCCCTA
CCCTGGCCGTACTAGCTCGTCGTGTGCTTGCCATTCTTGCCTCGCAAGCA
CAATCCAAGCGCATGTTTTCTACGGTAGGGCAAATGGTAACGCCCACGCG
GAATAGACTACTTCCTGAGAACGTAGAGCTTCTCGTGTACTTGCGC
back to top