mRNA_H-elongata_contig60271.13563.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60271.13563.1
Unique NamemRNA_H-elongata_contig60271.13563.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60271.13563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60271contigH-elongata_contig60271:3245..3478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size138
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60271.13563.1prot_H-elongata_contig60271.13563.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60271 3245..3444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.6381905-CDS-H-elongata_contig60271:3244..33511622930976.6381905-CDS-H-elongata_contig60271:3244..3351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60271 3245..3351 +
1691679647.870302-CDS-H-elongata_contig60271:3244..33511691679647.870302-CDS-H-elongata_contig60271:3244..3351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60271 3245..3351 +
1622930976.6639574-CDS-H-elongata_contig60271:3413..34441622930976.6639574-CDS-H-elongata_contig60271:3413..3444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60271 3414..3444 +
1691679647.880067-CDS-H-elongata_contig60271:3413..34441691679647.880067-CDS-H-elongata_contig60271:3413..3444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60271 3414..3444 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.685209-UTR-H-elongata_contig60271:3444..34781622930976.685209-UTR-H-elongata_contig60271:3444..3478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60271 3445..3478 +
1691679647.8900218-UTR-H-elongata_contig60271:3444..34781691679647.8900218-UTR-H-elongata_contig60271:3444..3478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60271 3445..3478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60271.13563.1

>prot_H-elongata_contig60271.13563.1 ID=prot_H-elongata_contig60271.13563.1|Name=mRNA_H-elongata_contig60271.13563.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
YFYLKDFRLILTLRTSTPFCHRKCNPGDQLSESRNNINNRNNKQE*
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mRNA from alignment at H-elongata_contig60271:3245..3478+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60271.13563.1 ID=mRNA_H-elongata_contig60271.13563.1|Name=mRNA_H-elongata_contig60271.13563.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig60271:3245..3478+ (Himanthalia elongata Himel1 dioecious)
TATTTTTATTTAAAAGACTTTAGGCTCATTCTAACTCTCCGAACATCCAC
ACCTTTTTGTCACCGTAAGTGCAATCCAGGGGACCAACTATCAGAAAGCA
GGAATAAGCATGAAGGTGTGGATGTTCGGAGAGTGAGAATGAGCCTAAAG
TCTTTTACATAAAAATAAGCATTAACAATAGGAATAATAAGCAGGAATAA
GTAGAACAATGGTAACAATAATGATATAATGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig60271:3245..3478+

>mRNA_H-elongata_contig60271.13563.1 ID=mRNA_H-elongata_contig60271.13563.1|Name=mRNA_H-elongata_contig60271.13563.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig60271:3245..3478+ (Himanthalia elongata Himel1 dioecious)
TATTTTTATTTAAAAGACTTTAGGCTCATTCTAACTCTCCGAACATCCAC
ACCTTTTTGTCACCGTAAGTGCAATCCAGGGGACCAACTATCAGAAAGCA
GGAATAATATTTTTATTTAAAAGACTTTAGGCTCATTCTAACTCTCCGAA
CATCCACACCTTTTTGTCACCGTAAGTGCAATCCAGGGGACCAACTATCA
GAAAGCAGGAATAACATTAACAATAGGAATAATAAGCAGGAATAACATTA
ACAATAGGAATAATAAGCAGGAATAA
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