mRNA_H-elongata_contig60015.13536.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60015.13536.1
Unique NamemRNA_H-elongata_contig60015.13536.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Match: A0A6H5JQR1_9PHAE (Ferredoxin--NADP(+) reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQR1_9PHAE)

HSP 1 Score: 375 bits (964), Expect = 4.690e-128
Identity = 178/221 (80.54%), Postives = 197/221 (89.14%), Query Frame = 1
Query:   22 RLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGVCSNYLCDATPGVELKLTGPAGKVMLMPESKPETDLIMIATGTGIAPYRAFIRRLFSEQTPARDAFKGQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRLDYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPGILTMLEGIAKKKGLEWDSFLKELKESGE 684
            RL S     YGDDMTGTTTTLCVRRATYWDEEMG +DPAKKGVCSNYLCDA PG +LKLTGP+GKVMLMPE KPETDLIMIATGTGIAPYR+F+RRLF+E TPA++AFKGQAWLFLGVAN+D+LLYD EWQ+VLK+ P+ FRLDYALSREQ NKSGGKMYIQDKVEEYGDEVF KL  GAHIYFCGLKGMMPGIL MLE +A KK L W++FLK+LK+ G+
Sbjct:  159 RLYSIASSRYGDDMTGTTTTLCVRRATYWDEEMGKEDPAKKGVCSNYLCDAEPGAKLKLTGPSGKVMLMPEDKPETDLIMIATGTGIAPYRSFVRRLFAEATPAKEAFKGQAWLFLGVANSDALLYDAEWQQVLKEFPDNFRLDYALSREQKNKSGGKMYIQDKVEEYGDEVFQKLSEGAHIYFCGLKGMMPGILNMLEKVATKKKLNWEAFLKDLKQKGQ 379          
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Match: A0A836CME4_9STRA (Ferredoxin--NADP(+) reductase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME4_9STRA)

HSP 1 Score: 343 bits (881), Expect = 1.740e-115
Identity = 164/222 (73.87%), Postives = 189/222 (85.14%), Query Frame = 1
Query:   22 RLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGVCSNYLCDATPGVELKLTGPAGKVMLMPESKP-ETDLIMIATGTGIAPYRAFIRRLFSEQTPARDAFKGQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRLDYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPGILTMLEGIAKKKGLEWDSFLKELKESGE 684
            RL S     YGDDMTGTTT+LCVRRATYW  E+GADDPAKKGVCSN+LCD  PG E+KLTGP+GKVML+PE++  + DLIM+ATGTGIAPYR+ IRRLF E TPA  A+KGQAWLFLGVAN+D+LLYDDEW++VLK NPE FR D ALSREQ N  GGKMYIQDKVEEYGDE+F KL  GAH+YFCGLKGMMPGILTMLEG+AK KG+ W+ FL +LK++G+
Sbjct:  156 RLYSIASSRYGDDMTGTTTSLCVRRATYWCPELGADDPAKKGVCSNFLCDTKPGDEVKLTGPSGKVMLLPEAENFDADLIMVATGTGIAPYRSMIRRLFVENTPAAAAYKGQAWLFLGVANSDALLYDDEWKEVLKSNPEQFRYDVALSREQTNAKGGKMYIQDKVEEYGDEIFGKLDKGAHMYFCGLKGMMPGILTMLEGVAKAKGIVWEEFLGKLKKNGQ 377          
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Match: A0A7S3HUU2_9SPIT (Ferredoxin--NADP(+) reductase (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3HUU2_9SPIT)

HSP 1 Score: 340 bits (872), Expect = 2.920e-114
Identity = 160/221 (72.40%), Postives = 184/221 (83.26%), Query Frame = 1
Query:   22 RLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGVCSNYLCDATPGVELKLTGPAGKVMLMPESKPETDLIMIATGTGIAPYRAFIRRLFSEQTPARDAFKGQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRLDYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPGILTMLEGIAKKKGLEWDSFLKELKESGE 684
            RL S     YGDDMTGTTTTLCVRRATYW  E+ A+DPAKKGVCSNYLCDA PG E+KLTGP+GKVML+PE  P  DLIM+ATGTGIAPYR+FIRRLF E+TP  + +KG AWLFLGVAN+D+LLYDDEWQ VLK +P  FR+DYALSREQ NK+GGKMYIQDKV EY DEVFN++  GAH+YFCGLKGMMPGI  MLEG+ K+KGL W+  L E K++G+
Sbjct:  146 RLYSIASSRYGDDMTGTTTTLCVRRATYWCPELKAEDPAKKGVCSNYLCDAKPGDEVKLTGPSGKVMLIPEQNPNVDLIMVATGTGIAPYRSFIRRLFVEKTPFGEVYKGLAWLFLGVANSDALLYDDEWQSVLKSHPNNFRVDYALSREQTNKNGGKMYIQDKVAEYSDEVFNRMDNGAHMYFCGLKGMMPGITEMLEGVCKEKGLVWEDKLGEWKKNGQ 366          
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Match: A0A7S3U4X7_9SPIT (Ferredoxin--NADP(+) reductase (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3U4X7_9SPIT)

HSP 1 Score: 340 bits (872), Expect = 3.430e-114
Identity = 160/221 (72.40%), Postives = 184/221 (83.26%), Query Frame = 1
Query:   22 RLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGVCSNYLCDATPGVELKLTGPAGKVMLMPESKPETDLIMIATGTGIAPYRAFIRRLFSEQTPARDAFKGQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRLDYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPGILTMLEGIAKKKGLEWDSFLKELKESGE 684
            RL S     YGDDMTGTTTTLCVRRATYW  E+ A+DPAKKGVCSNYLCDA PG E+KLTGP+GKVML+PE  P  DLIM+ATGTGIAPYR+FIRRLF E+TP  + +KG AWLFLGVAN+D+LLYDDEWQ VLK +P  FR+DYALSREQ NK+GGKMYIQDKV EY DEVFN++  GAH+YFCGLKGMMPGI  MLEG+ K+KGL W+  L E K++G+
Sbjct:  151 RLYSIASSRYGDDMTGTTTTLCVRRATYWCPELKAEDPAKKGVCSNYLCDAKPGDEVKLTGPSGKVMLIPEQNPNVDLIMVATGTGIAPYRSFIRRLFVEKTPFGEVYKGLAWLFLGVANSDALLYDDEWQSVLKSHPNNFRVDYALSREQTNKNGGKMYIQDKVAEYSDEVFNRMDNGAHMYFCGLKGMMPGITEMLEGVCKEKGLVWEDKLGEWKKNGQ 371          
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Match: A0A7S2WKE6_9STRA (Ferredoxin--NADP(+) reductase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKE6_9STRA)

HSP 1 Score: 339 bits (869), Expect = 4.580e-113
Identity = 160/226 (70.80%), Postives = 185/226 (81.86%), Query Frame = 1
Query:    1 PHSGTNARLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGVCSNYLCDATPGVELKLTGPAGKVMLMPESKPETDLIMIATGTGIAPYRAFIRRLFSEQTPARDAFKGQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRLDYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPGILTMLEGIAKKKGLEWDSFLKELKES 678
            PHS    RL S     YGDDMTG T +LCVRRATYWD E+ A+DPAKKG+CSN+LCD TPG ++K+TGP+GKVMLMPE  P+TD IM+ATGTGIAPYR FIRRLF E+TPA  A+KGQAWLFLGVAN+D+LLYDDEWQ V + NPE FRLDYA+SREQ N  GGKMY+QDKVEEY DE+F KL  GAHIYFCGLKGMMPGI  ML+ +A+ KGL +D +LK LK+S
Sbjct:  196 PHS---VRLYSIASSRYGDDMTGKTGSLCVRRATYWDPELNAEDPAKKGICSNFLCDTTPGEDVKMTGPSGKVMLMPEENPKTDYIMVATGTGIAPYRGFIRRLFVEETPAASAYKGQAWLFLGVANSDALLYDDEWQSVKESNPEQFRLDYAISREQENTKGGKMYVQDKVEEYSDEIFEKLNNGAHIYFCGLKGMMPGIQGMLKTVAESKGLNYDEWLKGLKKS 418          
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Match: A0A7S3KVQ4_9STRA (Ferredoxin--NADP(+) reductase n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S3KVQ4_9STRA)

HSP 1 Score: 335 bits (860), Expect = 6.720e-113
Identity = 161/224 (71.88%), Postives = 184/224 (82.14%), Query Frame = 1
Query:    1 PHSGTNARLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGVCSNYLCDATPGVELKLTGPAGKVMLMPESKPETDLIMIATGTGIAPYRAFIRRLFSEQTPARDAFKGQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRLDYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPGILTMLEGIAKKKGLEWDSFLKELK 672
            PHS    RL S     YGDDMTG T +LCVRRATYW  E+ ADDPAKKG+CSN+LCD  PG E+++TGPAGKVMLMPE  P TD IM+ATGTGIAPYR FIRRLF E TPA +A+KG+AWLFLGVAN+D+LLYDDEWQ+V K  P+ FRLDYALSREQ NKSGGKMYIQDKVEEY DE+F+KL  GAHIYFCGLKGMMPGI  ML+ +A+ KGL++D +LK LK
Sbjct:  111 PHS---VRLYSIASSRYGDDMTGKTGSLCVRRATYWCPELKADDPAKKGICSNFLCDTEPGAEVQMTGPAGKVMLMPEEDPNTDYIMVATGTGIAPYRGFIRRLFVEDTPAAEAYKGEAWLFLGVANSDALLYDDEWQEVKKKFPKNFRLDYALSREQTNKSGGKMYIQDKVEEYADEIFSKLDNGAHIYFCGLKGMMPGIQDMLKKVAEDKGLDYDEWLKGLK 331          
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Match: A0A8J5XIC4_DIALT (Ferredoxin--NADP(+) reductase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XIC4_DIALT)

HSP 1 Score: 335 bits (860), Expect = 9.050e-113
Identity = 159/221 (71.95%), Postives = 183/221 (82.81%), Query Frame = 1
Query:   22 RLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGVCSNYLCDATPGVELKLTGPAGKVMLMPESKPETDLIMIATGTGIAPYRAFIRRLFSEQTPARDAFKGQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRLDYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPGILTMLEGIAKKKGLEWDSFLKELKESGE 684
            RL S     YGDDMTG T TLCVRRATY D E G +DPAKKGVCSN+LCD+TPG E+ +TGP+GKVMLMPE  P+TDLIM+ATGTGIAPYR FIRRLF E+TPA  A++GQAWLFLGVAN+DSLLYDDEWQ   +  P  FRLDYALSREQ NKSGGKMYIQDKVEEY DE+F KL+ GAH+YFCGLKGMMPGI  MLE +A+ KG+ W+  L+ELK++G+
Sbjct:  124 RLYSIASSRYGDDMTGKTATLCVRRATYVDPETGKEDPAKKGVCSNFLCDSTPGREISMTGPSGKVMLMPEKDPKTDLIMVATGTGIAPYRGFIRRLFVEKTPAAAAYEGQAWLFLGVANSDSLLYDDEWQAAKRSFPSNFRLDYALSREQNNKSGGKMYIQDKVEEYADEIFAKLENGAHMYFCGLKGMMPGITEMLERVAQSKGISWEEKLEELKKNGQ 344          
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Match: A0A0G4FE87_VITBC (Ferredoxin--NADP(+) reductase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FE87_VITBC)

HSP 1 Score: 335 bits (859), Expect = 1.620e-112
Identity = 159/219 (72.60%), Postives = 181/219 (82.65%), Query Frame = 1
Query:   22 RLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGVCSNYLCDATPGVELKLTGPAGKVMLMPESKPETDLIMIATGTGIAPYRAFIRRLFSEQTPARDAFKGQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRLDYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPGILTMLEGIAKKKGLEWDSFLKELKES 678
            RL S     YGDDMTG T +LCVRRA Y D E G + P KKGVCSNYLCDA PG ELKLTGPAGKVMLMPE KP  DLIM+ATGTGIAPYR F+RRLF EQTPARDAFKG AWLFLGVAN+DSLLYD+EWQ +LK++P+ FRLDYALSREQ NK GGKMYIQDK+EEY +E+F+++  GAH+YFCGLKGMMPGIL ML+G+A+ KG  W+  LK  KE+
Sbjct:  131 RLYSIASTRYGDDMTGNTASLCVRRAVYNDPETGEEVPEKKGVCSNYLCDAQPGDELKLTGPAGKVMLMPEDKPAADLIMVATGTGIAPYRGFLRRLFVEQTPARDAFKGLAWLFLGVANSDSLLYDEEWQSILKEHPDKFRLDYALSREQNNKKGGKMYIQDKMEEYAEEIFDRMDKGAHMYFCGLKGMMPGILEMLKGVAESKGKTWEDVLKSWKEN 349          
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Match: A0A6T6FTN4_9STRA (Ferredoxin--NADP(+) reductase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6FTN4_9STRA)

HSP 1 Score: 334 bits (857), Expect = 1.790e-112
Identity = 160/224 (71.43%), Postives = 185/224 (82.59%), Query Frame = 1
Query:    1 PHSGTNARLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGVCSNYLCDATPGVELKLTGPAGKVMLMPESKPETDLIMIATGTGIAPYRAFIRRLFSEQTPARDAFKGQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRLDYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPGILTMLEGIAKKKGLEWDSFLKELK 672
            PHS    RL S     YGDDMTG T +LCVRRATYW  E+ ADDPAKKG+CSN+LCD+ PG E+K+TGPAGKVMLMPE  P TD IM+ATGTGIAPYR F+RRLF+E TPA  A+KG+AWLFLGVAN+D+LLYDDE+Q   K+ P+ FR+DYALSREQ NKSGGKMYIQDKVEEY DE+F KL+ GAHIYFCGLKGMMPGI  ML+G+A+KKGLE+  +LK LK
Sbjct:  109 PHS---VRLYSIASSRYGDDMTGKTGSLCVRRATYWCPELKADDPAKKGICSNFLCDSQPGDEVKMTGPAGKVMLMPEEDPTTDYIMVATGTGIAPYRGFVRRLFAEDTPAAKAYKGEAWLFLGVANSDALLYDDEFQAAKKEFPDNFRIDYALSREQTNKSGGKMYIQDKVEEYADEIFEKLENGAHIYFCGLKGMMPGIQDMLKGVAEKKGLEYTDWLKGLK 329          
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Match: A0A7S3TJG3_EMIHU (Ferredoxin--NADP(+) reductase n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TJG3_EMIHU)

HSP 1 Score: 334 bits (857), Expect = 2.760e-112
Identity = 160/224 (71.43%), Postives = 184/224 (82.14%), Query Frame = 1
Query:   22 RLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGVCSNYLCDATPGVELKLTGPAGKVMLMPESKPETDLIMIATGTGIAPYRAFIRRLFSEQTPARDAFK---GQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRLDYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPGILTMLEGIAKKKGLEWDSFLKELKESGE 684
            RL S     YGDDMTGTTTTLCVRRATYW  E+ ADDPAKKGVCSNYLCD+ PG ++KLTGP+GKVML+PE  P  DLIM+ATGTGIAPYR+FIRRLF E+TP  +A+    GQAWLFLGVAN+D+LLYDDEWQ+VLK  P+ FRLDYALSREQ NK GGKMYIQDKV EY DE+F+K+  GAH+YFCGLKGMMPGI  MLEG+ K KGL W+  L E K++G+
Sbjct:  123 RLYSIASSRYGDDMTGTTTTLCVRRATYWCPELKADDPAKKGVCSNYLCDSKPGDDVKLTGPSGKVMLIPEKDPNVDLIMVATGTGIAPYRSFIRRLFVEKTPFGEAYTKGTGQAWLFLGVANSDALLYDDEWQEVLKKYPDNFRLDYALSREQKNKDGGKMYIQDKVAEYSDEIFSKMDNGAHMYFCGLKGMMPGITEMLEGVCKDKGLVWEDKLSEWKKAGQ 346          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60015.13536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQR1_9PHAE4.690e-12880.54Ferredoxin--NADP(+) reductase n=2 Tax=Ectocarpus T... [more]
A0A836CME4_9STRA1.740e-11573.87Ferredoxin--NADP(+) reductase n=2 Tax=Tribonema mi... [more]
A0A7S3HUU2_9SPIT2.920e-11472.40Ferredoxin--NADP(+) reductase (Fragment) n=1 Tax=F... [more]
A0A7S3U4X7_9SPIT3.430e-11472.40Ferredoxin--NADP(+) reductase (Fragment) n=3 Tax=E... [more]
A0A7S2WKE6_9STRA4.580e-11370.80Ferredoxin--NADP(+) reductase n=1 Tax=Eucampia ant... [more]
A0A7S3KVQ4_9STRA6.720e-11371.88Ferredoxin--NADP(+) reductase n=3 Tax=Bacillarioph... [more]
A0A8J5XIC4_DIALT9.050e-11371.95Ferredoxin--NADP(+) reductase n=1 Tax=Diacronema l... [more]
A0A0G4FE87_VITBC1.620e-11272.60Ferredoxin--NADP(+) reductase n=2 Tax=Vitrella bra... [more]
A0A6T6FTN4_9STRA1.790e-11271.43Ferredoxin--NADP(+) reductase n=1 Tax=Craspedostau... [more]
A0A7S3TJG3_EMIHU2.760e-11271.43Ferredoxin--NADP(+) reductase n=3 Tax=Emiliania hu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60015contigH-elongata_contig60015:1885..3048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.2
Seed ortholog evalue7.1e-100
Seed eggNOG ortholog2880.D8LCX8
Preferred nameFNR1
KEGG koko:K02641
KEGG Pathwayko00195,ko01100,map00195,map01100
GOsGO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0055035,GO:0098796,GO:0098807
EggNOG free text desc.NADPH-hemoprotein reductase activity
EggNOG OGsCOG0369@1,KOG1158@2759
EC1.18.1.2
COG Functional cat.P
BiGG ReactioniRC1080.CRv4_Au5_s11_g2609_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size684
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.3828819-CDS-H-elongata_contig60015:1884..23971622930973.3828819-CDS-H-elongata_contig60015:1884..2397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60015 1885..2397 +
1691679646.8316796-CDS-H-elongata_contig60015:1884..23971691679646.8316796-CDS-H-elongata_contig60015:1884..2397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60015 1885..2397 +
1622930973.3999274-CDS-H-elongata_contig60015:2877..30481622930973.3999274-CDS-H-elongata_contig60015:2877..3048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60015 2878..3048 +
1691679646.8437738-CDS-H-elongata_contig60015:2877..30481691679646.8437738-CDS-H-elongata_contig60015:2877..3048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60015 2878..3048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60015.13536.1prot_H-elongata_contig60015.13536.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60015 1885..3048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60015.13536.1

>prot_H-elongata_contig60015.13536.1 ID=prot_H-elongata_contig60015.13536.1|Name=mRNA_H-elongata_contig60015.13536.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
PHSGTNARLSSPPKPSYGDDMTGTTTTLCVRRATYWDEEMGADDPAKKGV
CSNYLCDATPGVELKLTGPAGKVMLMPESKPETDLIMIATGTGIAPYRAF
IRRLFSEQTPARDAFKGQAWLFLGVANTDSLLYDDEWQKVLKDNPEGFRL
DYALSREQANKSGGKMYIQDKVEEYGDEVFNKLKGGAHIYFCGLKGMMPG
ILTMLEGIAKKKGLEWDSFLKELKESGE
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mRNA from alignment at H-elongata_contig60015:1885..3048+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60015.13536.1 ID=mRNA_H-elongata_contig60015.13536.1|Name=mRNA_H-elongata_contig60015.13536.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-elongata_contig60015:1885..3048+ (Himanthalia elongata Himel1 dioecious)
CCCCATTCTGGCACGAACGCACGCCTTTCCTCTCCTCCAAAACCTAGCTA CGGTGACGACATGACAGGAACCACTACGACCCTCTGCGTGCGCCGCGCGA CGTACTGGGACGAGGAGATGGGGGCCGATGACCCCGCCAAGAAGGGCGTG TGCTCCAACTACCTCTGTGATGCCACGCCGGGCGTCGAGCTCAAGCTTAC CGGCCCCGCCGGCAAAGTCATGCTCATGCCGGAGAGCAAGCCCGAGACGG ACCTCATCATGATCGCGACTGGAACGGGCATCGCTCCGTACCGCGCATTC ATCCGCCGGCTGTTCAGCGAACAGACGCCCGCGCGTGACGCGTTCAAGGG CCAGGCTTGGCTTTTCCTCGGAGTGGCCAACACGGACTCGCTTCTGTACG ACGACGAGTGGCAAAAAGTGCTCAAGGACAACCCGGAAGGTTTCCGCCTC GACTACGCGCTCTCGCGTGAGCAGGCCAACAAGTCCGGCGGGAAGATGTA CATCCAGGACAAGGTGGGCCGCTCTGCTTTGCGGTGTCGTGCTGTGCTGT GATATGACGTGGTTCGTTGCGCTCATCCTTACCCTCCTCCCCTTTTTATT TTTATTTTTAAAACGTATGAACTCATTCCAACCCTCCGAACATTCACGCC CTCTTAGCACGGTGAGTCTCATGCAATTCAGGGGACCAACTATCGTCAGG GTAGCATTCGAGCACAAAATGGCCGCGCTTGGTTTATTTGCTATCGTTAG ACGGAAATTTTGCGTATGAAAGAGATCAGTGGTGATAGGTGTGCGGCGCG CGCGCGTATGATGTGTTAAGGCCGGAAGGCGCCGTCGATGGATTTACAAC GCAAGCGACTGGTAGATCTGCGCCAGGGGTTAGGTGTAGCGAACAACTCT TCTCTCCGTTGCCGATCGGAAAATTGGGGAGGATTTTGGGGAGAAGTCAT CGCATTGGTGGATTATGGATGATGCGTGTCGGAACGCCTCCAGGTGGAAG AATACGGGGATGAAGTGTTCAACAAGCTCAAAGGTGGGGCTCACATCTAC TTCTGCGGTCTGAAGGGTATGATGCCGGGCATCCTGACCATGCTCGAGGG CATCGCCAAGAAGAAGGGCCTCGAGTGGGACTCTTTCCTCAAGGAGCTCA AGGAGTCGGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig60015:1885..3048+

>mRNA_H-elongata_contig60015.13536.1 ID=mRNA_H-elongata_contig60015.13536.1|Name=mRNA_H-elongata_contig60015.13536.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig60015:1885..3048+ (Himanthalia elongata Himel1 dioecious)
CCCCATTCTGGCACGAACGCACGCCTTTCCTCTCCTCCAAAACCTAGCTA
CGGTGACGACATGACAGGAACCACTACGACCCTCTGCGTGCGCCGCGCGA
CGTACTGGGACGAGGAGATGGGGGCCGATGACCCCGCCAAGAAGGGCGTG
TGCTCCAACTACCTCTGTGATGCCACGCCGGGCGTCGAGCTCAAGCTTAC
CGGCCCCGCCGGCAAAGTCATGCTCATGCCGGAGAGCAAGCCCGAGACGG
ACCTCATCATGATCGCGACTGGAACGGGCATCGCTCCGTACCGCGCATTC
ATCCGCCGGCTGTTCAGCGAACAGACGCCCGCGCGTGACGCGTTCAAGGG
CCAGGCTTGGCTTTTCCTCGGAGTGGCCAACACGGACTCGCTTCTGTACG
ACGACGAGTGGCAAAAAGTGCTCAAGGACAACCCGGAAGGTTTCCGCCTC
GACTACGCGCTCTCGCGTGAGCAGGCCAACAAGTCCGGCGGGAAGATGTA
CATCCAGGACAAGCCCCATTCTGGCACGAACGCACGCCTTTCCTCTCCTC
CAAAACCTAGCTACGGTGACGACATGACAGGAACCACTACGACCCTCTGC
GTGCGCCGCGCGACGTACTGGGACGAGGAGATGGGGGCCGATGACCCCGC
CAAGAAGGGCGTGTGCTCCAACTACCTCTGTGATGCCACGCCGGGCGTCG
AGCTCAAGCTTACCGGCCCCGCCGGCAAAGTCATGCTCATGCCGGAGAGC
AAGCCCGAGACGGACCTCATCATGATCGCGACTGGAACGGGCATCGCTCC
GTACCGCGCATTCATCCGCCGGCTGTTCAGCGAACAGACGCCCGCGCGTG
ACGCGTTCAAGGGCCAGGCTTGGCTTTTCCTCGGAGTGGCCAACACGGAC
TCGCTTCTGTACGACGACGAGTGGCAAAAAGTGCTCAAGGACAACCCGGA
AGGTTTCCGCCTCGACTACGCGCTCTCGCGTGAGCAGGCCAACAAGTCCG
GCGGGAAGATGTACATCCAGGACAAGGTGGAAGAATACGGGGATGAAGTG
TTCAACAAGCTCAAAGGTGGGGCTCACATCTACTTCTGCGGTCTGAAGGG
TATGATGCCGGGCATCCTGACCATGCTCGAGGGCATCGCCAAGAAGAAGG
GCCTCGAGTGGGACTCTTTCCTCAAGGAGCTCAAGGAGTCGGGTGAGGTG
GAAGAATACGGGGATGAAGTGTTCAACAAGCTCAAAGGTGGGGCTCACAT
CTACTTCTGCGGTCTGAAGGGTATGATGCCGGGCATCCTGACCATGCTCG
AGGGCATCGCCAAGAAGAAGGGCCTCGAGTGGGACTCTTTCCTCAAGGAG
CTCAAGGAGTCGGGTGAG
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