mRNA_H-elongata_contig59620.13477.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59620.13477.1
Unique NamemRNA_H-elongata_contig59620.13477.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59620.13477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59620contigH-elongata_contig59620:1620..2204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59620.13477.1prot_H-elongata_contig59620.13477.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59620 1812..2147 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.5945268-UTR-H-elongata_contig59620:1619..18111622930965.5945268-UTR-H-elongata_contig59620:1619..1811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59620 1620..1811 +
1691679643.2506177-UTR-H-elongata_contig59620:1619..18111691679643.2506177-UTR-H-elongata_contig59620:1619..1811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59620 1620..1811 +
1622930965.6442533-UTR-H-elongata_contig59620:2147..22041622930965.6442533-UTR-H-elongata_contig59620:2147..2204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59620 2148..2204 +
1691679643.274534-UTR-H-elongata_contig59620:2147..22041691679643.274534-UTR-H-elongata_contig59620:2147..2204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59620 2148..2204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.628409-CDS-H-elongata_contig59620:1811..21471622930965.628409-CDS-H-elongata_contig59620:1811..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59620 1812..2147 +
1691679643.2645402-CDS-H-elongata_contig59620:1811..21471691679643.2645402-CDS-H-elongata_contig59620:1811..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59620 1812..2147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59620.13477.1

>prot_H-elongata_contig59620.13477.1 ID=prot_H-elongata_contig59620.13477.1|Name=mRNA_H-elongata_contig59620.13477.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MAPKQNHNFDSVLQLRTSTTFITHASPLFLRETWSSRGPRKLTEFFRFLS
SPRLESRCAVSCLELTKVCGKTIIYWMQRLMSSTLSSRSSASGDGFRCLL
LGSNADISRNS*
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mRNA from alignment at H-elongata_contig59620:1620..2204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59620.13477.1 ID=mRNA_H-elongata_contig59620.13477.1|Name=mRNA_H-elongata_contig59620.13477.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=585bp|location=Sequence derived from alignment at H-elongata_contig59620:1620..2204+ (Himanthalia elongata Himel1 dioecious)
CTACGCTGGTGATGGTCAATCCAGCCACCAAGGATATCACGCGATATCGG
AGCACCATGCTGCTGCCTCCAGGTGCTTCTCGCTTCAAATTATGCAAGCG
CGGGATCCTTCTTGTCCCCGCCATCCTGCTATTTCCAGCAGCAGCCCCTC
TAGTAACCTGTCTGAGTCGAAAAACACCCTCAGTAAGCAGGGATGGCTCC
GAAACAGAATCACAACTTTGATTCGGTCCTGCAGCTTCGCACTTCCACCA
CCTTTATCACTCACGCCTCGCCTTTGTTTTTACGGGAGACTTGGAGCTCA
AGGGGCCCACGTAAATTAACGGAGTTTTTTCGCTTCCTCTCAAGTCCTCG
GTTAGAGAGCCGTTGCGCGGTGTCCTGCCTCGAGCTCACCAAAGTTTGTG
GAAAAACTATTATTTACTGGATGCAGCGTCTAATGTCTTCCACGTTATCC
TCTAGATCTTCGGCATCTGGAGACGGGTTCAGATGCCTACTTCTGGGATC
AAACGCCGATATATCACGAAACAGCTAGTTGGGTTACGGAACGATGACCC
TCTAGGCTTCGGCTGAATCACAGTGTTCTACGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig59620:1620..2204+

>mRNA_H-elongata_contig59620.13477.1 ID=mRNA_H-elongata_contig59620.13477.1|Name=mRNA_H-elongata_contig59620.13477.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig59620:1620..2204+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCCGAAACAGAATCACAACTTTGATTCGGTCCTGCAGCTTCGCAC
TTCCACCACCTTTATCACTCACGCCTCGCCTTTGTTTTTACGGGAGACTT
GGAGCTCAAGGGGCCCACGTAAATTAACGGAGTTTTTTCGCTTCCTCTCA
AGTCCTCGGTTAGAGAGCCGTTGCGCGGTGTCCTGCCTCGAGCTCACCAA
AGTTTGTGGAAAAACTATTATTTACTGGATGCAGCGTCTAATGTCTTCCA
CGTTATCCTCTAGATCTTCGGCATCTGGAGACGGGTTCAGATGCCTACTT
CTGGGATCAAACGCCGATATATCACGAAACAGCTAGATGGCTCCGAAACA
GAATCACAACTTTGATTCGGTCCTGCAGCTTCGCACTTCCACCACCTTTA
TCACTCACGCCTCGCCTTTGTTTTTACGGGAGACTTGGAGCTCAAGGGGC
CCACGTAAATTAACGGAGTTTTTTCGCTTCCTCTCAAGTCCTCGGTTAGA
GAGCCGTTGCGCGGTGTCCTGCCTCGAGCTCACCAAAGTTTGTGGAAAAA
CTATTATTTACTGGATGCAGCGTCTAATGTCTTCCACGTTATCCTCTAGA
TCTTCGGCATCTGGAGACGGGTTCAGATGCCTACTTCTGGGATCAAACGC
CGATATATCACGAAACAGCTAG
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