mRNA_H-elongata_contig59618.13476.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Match: D8LMS0_ECTSI (SNF2-related domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS0_ECTSI) HSP 1 Score: 178 bits (452), Expect = 2.070e-49 Identity = 95/133 (71.43%), Postives = 107/133 (80.45%), Query Frame = 1
Query: 1 QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAGDLFLFLLSARAGGVGLNLIGANRIVLYDSDWNPATDDQA--RRYHTSETRETTAAPFFYVSMYRLVSTGTLEENIYQRQIFK 393
+VVVASNFTSALDVL LAERN WGF RLDG T ++ARQ LVDRFNRA DLFLF LS +AGGVGLNL+GANRIVL+DSDWNPATDDQA R + +T+E VSMYRL+STGTLEE+I+QRQIFK
Sbjct: 777 KVVVASNFTSALDVLETLAERNAWGFLRLDGGTTTNARQNLVDRFNRASPEDLFLFYLSTKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQTKE--------VSMYRLLSTGTLEESIFQRQIFK 901
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Match: A0A6H5JTI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI7_9PHAE) HSP 1 Score: 176 bits (447), Expect = 9.910e-49 Identity = 94/133 (70.68%), Postives = 106/133 (79.70%), Query Frame = 1
Query: 1 QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAGDLFLFLLSARAGGVGLNLIGANRIVLYDSDWNPATDDQA--RRYHTSETRETTAAPFFYVSMYRLVSTGTLEENIYQRQIFK 393
+VVVASNFTSALDVL LAERN WGF RLDG T ++ RQ LVDRFNRA DLFLF LSA+AGGVGLNL+GANRIVL+DSDWNPATDDQA R + +T+E V MYRL+STGTLEE+I+QRQIFK
Sbjct: 747 KVVVASNFTSALDVLETLAERNSWGFLRLDGGTTTNERQNLVDRFNRASPEDLFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQTKE--------VCMYRLLSTGTLEESIFQRQIFK 871
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Match: A0A7S1FQD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQD2_9STRA) HSP 1 Score: 145 bits (366), Expect = 2.080e-39 Identity = 78/133 (58.65%), Postives = 94/133 (70.68%), Query Frame = 1
Query: 1 QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAGDLFLFLLSARAGGVGLNLIGANRIVLYDSDWNPATDDQ--ARRYHTSETRETTAAPFFYVSMYRLVSTGTLEENIYQRQIFK 393
+VVV+SNFTS LD+L E GW F+RLDGST S RQ +VD FNR A F FLLSARAGG GLNL+GA+R+++YD DWNPATD Q AR Y T +T+ TT +YRL +TGT+EE +YQRQI K
Sbjct: 134 KVVVSSNFTSVLDILARHLEMRGWTFQRLDGSTCSEKRQEMVDVFNRTSAEQNFCFLLSARAGGCGLNLVGASRLIMYDPDWNPATDLQTMARIYRTGQTKPTT--------IYRLFTTGTVEEIVYQRQIQK 258
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Match: A0A066VQ34_TILAU (Uncharacterized protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VQ34_TILAU) HSP 1 Score: 142 bits (357), Expect = 1.330e-36 Identity = 75/132 (56.82%), Postives = 94/132 (71.21%), Query Frame = 1
Query: 1 QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAGDLFLFLLSARAGGVGLNLIGANRIVLYDSDWNPATDDQAR-RYHTSETRETTAAPFFYVSMYRLVSTGTLEENIYQRQIFK 393
+VVV SNFTS LD++ L ER GW RLDG T + RQ LV+ FNR+PA F+FLLSA++GGVGLNLIGANR+VL+DSDWNP+TD QA R H R+ P F +YR++ GT++E IYQRQ+ K
Sbjct: 688 KVVVVSNFTSTLDIIEFLCERRGWPLLRLDGKTKTETRQELVNEFNRSPASSSFVFLLSAKSGGVGLNLIGANRLVLFDSDWNPSTDKQAMARIH----RDGQKKPCF---IYRMLLAGTMDEKIYQRQLSK 812
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Match: A0A7S2W8P1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8P1_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.880e-34 Identity = 74/134 (55.22%), Postives = 95/134 (70.90%), Query Frame = 1
Query: 1 QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAGD-LFLFLLSARAGGVGLNLIGANRIVLYDSDWNPATDDQ--ARRYHTSETRETTAAPFFYVSMYRLVSTGTLEENIYQRQIFK 393
+VV+ SNFT+ALD+ +A+ +GW + RLDGST RQ LVDR NR GD LFLFLLS+ AGGVGLNL+GA+R+VL+D+DWNPA D Q AR + + R P F +YRL+ TGT+EE +YQRQ+ K
Sbjct: 593 RVVLVSNFTTALDLFEAMADHHGWQYVRLDGSTPQQERQALVDRCNRRVPGDNLFLFLLSSHAGGVGLNLVGASRLVLFDTDWNPAVDKQVMARVWRNGQRR-----PVF---IYRLLCTGTIEEKMYQRQLSK 718
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Match: A0A8H3TRU6_9TREE (Uncharacterized protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3TRU6_9TREE) HSP 1 Score: 133 bits (334), Expect = 1.680e-33 Identity = 72/132 (54.55%), Postives = 92/132 (69.70%), Query Frame = 1
Query: 1 QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAGDLFLFLLSARAGGVGLNLIGANRIVLYDSDWNPATDDQAR-RYHTSETRETTAAPFFYVSMYRLVSTGTLEENIYQRQIFK 393
++V+ SN+TS LDVL L + RLDGSTA +RQ VD+FNR+ +F+FLLSA+AGGVGLNLIGA+R+VL+DSDWNP+TD QA R H + V +YRLV+TGT+EE IYQRQ+ K
Sbjct: 668 KIVLVSNYTSTLDVLEKLCRNKRYKHLRLDGSTAQKSRQEYVDKFNRSDQRQVFVFLLSAKAGGVGLNLIGASRLVLFDSDWNPSTDLQAMARIHRDGQKHP-------VHIYRLVTTGTIEEKIYQRQVTK 792
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Match: A0A2K1K7S9_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K7S9_PHYPA) HSP 1 Score: 132 bits (333), Expect = 2.280e-33 Identity = 74/131 (56.49%), Postives = 91/131 (69.47%), Query Frame = 1
Query: 1 QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAGDLFLFLLSARAGGVGLNLIGANRIVLYDSDWNPATDDQARRYHTSETRETTAAPFFYVSMYRLVSTGTLEENIYQRQIFK 393
+VVV SNFT LD++ + GW + RLDGST +S RQ LVD+ N GD+F+FLLS++AGG GLNLIGANR+VL+D DWNPATD QA RE P V +YRL+STG++EE IYQRQI K
Sbjct: 860 RVVVVSNFTRTLDLIQDMCTSQGWNWLRLDGSTEASKRQLLVDQLNSG-VGDVFVFLLSSKAGGTGLNLIGANRLVLFDPDWNPATDSQAI---ARIWREGQLKP---VLIYRLLSTGSIEEKIYQRQIMK 983
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Match: W9W8J3_9EURO (Uncharacterized protein n=2 Tax=Cladophialophora TaxID=82105 RepID=W9W8J3_9EURO) HSP 1 Score: 131 bits (330), Expect = 5.730e-33 Identity = 72/132 (54.55%), Postives = 90/132 (68.18%), Query Frame = 1
Query: 1 QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAGDLFLFLLSARAGGVGLNLIGANRIVLYDSDWNPATDDQA-RRYHTSETRETTAAPFFYVSMYRLVSTGTLEENIYQRQIFK 393
+VVV SN+TS L+++ LA + F RLDGS A+ RQ LVD+FNR+ A FLFLLSA+AGGVGLNLIGANR+VL+D DWNPATDDQA R H + + +YR + G LEE I+QRQ+ K
Sbjct: 626 KVVVISNYTSTLNLIQQLAANSNLSFLRLDGSVAAKKRQALVDKFNRSTASQCFLFLLSAKAGGVGLNLIGANRLVLFDVDWNPATDDQAVARIHRQGQQR-------HCKIYRFLIKGGLEERIWQRQVVK 750
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Match: UPI001DC49AF8 (DNA repair and recombination protein RAD54B n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001DC49AF8) HSP 1 Score: 131 bits (330), Expect = 5.730e-33 Identity = 69/133 (51.88%), Postives = 95/133 (71.43%), Query Frame = 1
Query: 1 QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAGDLFLFLLSARAGGVGLNLIGANRIVLYDSDWNPATDDQA--RRYHTSETRETTAAPFFYVSMYRLVSTGTLEENIYQRQIFK 393
+VV+ SN+TS LD+LG L + + + RLDG+TA + RQ LVDRFNR+P + F+FLLSA+AGGVGLNLIGA+R+V++D DWNP+TD QA R + +TR +YRL++ G L+E I+QRQ+ K
Sbjct: 641 KVVLVSNYTSTLDILGNLLDSMSYKYIRLDGTTAQNKRQDLVDRFNRSPRSNSFVFLLSAKAGGVGLNLIGASRLVMFDLDWNPSTDVQAMARIHRDGQTRP--------CHIYRLLTQGALDEKIFQRQVSK 765
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Match: M2N0P1_BAUPA (Uncharacterized protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2N0P1_BAUPA) HSP 1 Score: 131 bits (329), Expect = 7.820e-33 Identity = 71/132 (53.79%), Postives = 94/132 (71.21%), Query Frame = 1
Query: 1 QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAGDLFLFLLSARAGGVGLNLIGANRIVLYDSDWNPATDDQAR-RYHTSETRETTAAPFFYVSMYRLVSTGTLEENIYQRQIFK 393
+VV+ SN+T+ +D+LG L + + RLDGST + RQ LVDRFNR+P + F+FLLSA+AGGVGLNLIGA+R++L+D DWNPATD QA R H R+ P F +YRLV+ G L+E I+QRQ+ K
Sbjct: 632 KVVLVSNYTATMDILGNLLSSLSYRYLRLDGSTPAGKRQELVDRFNRSPPSNSFVFLLSAKAGGVGLNLIGASRLILFDLDWNPATDLQAMARVH----RDGQKRPCF---IYRLVTQGALDEKIFQRQVSK 756 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59618.13476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59618.13476.1 >prot_H-elongata_contig59618.13476.1 ID=prot_H-elongata_contig59618.13476.1|Name=mRNA_H-elongata_contig59618.13476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp QVVVASNFTSALDVLGCLAERNGWGFERLDGSTASSARQRLVDRFNRAPAback to top mRNA from alignment at H-elongata_contig59618:149..1273+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59618.13476.1 ID=mRNA_H-elongata_contig59618.13476.1|Name=mRNA_H-elongata_contig59618.13476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1125bp|location=Sequence derived from alignment at H-elongata_contig59618:149..1273+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59618:149..1273+ >mRNA_H-elongata_contig59618.13476.1 ID=mRNA_H-elongata_contig59618.13476.1|Name=mRNA_H-elongata_contig59618.13476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig59618:149..1273+ (Himanthalia elongata Himel1 dioecious)back to top |