mRNA_H-elongata_contig59233.13435.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59233.13435.1
Unique NamemRNA_H-elongata_contig59233.13435.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Match: A0A7S1DEH9_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DEH9_CYCTE)

HSP 1 Score: 94.0 bits (232), Expect = 4.100e-23
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   70 DINPKDYRAWYGLGQAYEILQMHLYATYYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERV 270
            DI+PKDYRAWYGLGQAYEIL M LYA +YYR+A  +R YD RMW A+  C   LGKR EAI  +E+ 
Sbjct:    1 DIHPKDYRAWYGLGQAYEILGMPLYALFYYRKACQVRSYDPRMWSALAGCYLLLGKRQEAILAFEKA 67
[Close]
BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Match: A0A137QZ28_9AGAR (Anaphase-promoting complex subunit 8 n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QZ28_9AGAR)

HSP 1 Score: 101 bits (251), Expect = 5.460e-23
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   70 DINPKDYRAWYGLGQAYEILQMHLYATYYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERV 270
            D+N KDYRAWYGLGQAYE+L MH Y+ YYY+RAT LRPYD R+W A G C E +G+R EAI  Y+R 
Sbjct:  455 DVNRKDYRAWYGLGQAYELLSMHHYSLYYYQRATSLRPYDIRLWQAQGLCYEEIGRRREAIECYKRA 521
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BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Match: A0A8H6TBQ7_9AGAR (Anaphase-promoting complex subunit 8 n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6TBQ7_9AGAR)

HSP 1 Score: 98.2 bits (243), Expect = 6.380e-22
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   19 LLQLNSTASSLAVTSSEDINPKDYRAWYGLGQAYEILQMHLYATYYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERV 270
            LL L    ++L+ + S D+N KDYRAWYGLGQAYE+L MH YA +YY  AT LRPYD R+W A G C E +G+  EAI  ++R 
Sbjct:  401 LLPLVLVIAALSFSPSIDVNRKDYRAWYGLGQAYELLNMHQYALHYYHNATALRPYDVRLWQAQGMCYEEMGRLREAIECFKRA 484
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BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Match: A0A7S2KD15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KD15_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.610e-22
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:   85 DYRAWYGLGQAYEILQMHLYATYYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERV 270
            DYRAWYGLGQ YEIL M L++ +YYR+A  LRPYDARMW A+G C   L K+SEAI +YER 
Sbjct:    1 DYRAWYGLGQTYEILNMLLFSLFYYRKAATLRPYDARMWCAIGGCYLALNKKSEAIRSYERA 62
[Close]
BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Match: A0A1J8R5F0_9AGAM (GLTSCR1 domain-containing protein n=1 Tax=Rhizopogon vesiculosus TaxID=180088 RepID=A0A1J8R5F0_9AGAM)

HSP 1 Score: 97.4 bits (241), Expect = 1.270e-21
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   67 EDINPKDYRAWYGLGQAYEILQMHLYATYYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERV 270
            ED+N KDYRAWYGLGQAYE+L MH YA YYY+ AT LRPYD R+W A G C E +G+  EA+   +R 
Sbjct:  408 EDVNRKDYRAWYGLGQAYELLSMHRYALYYYQHATALRPYDVRLWQAQGACYEEIGRLKEAVECLKRA 475
[Close]
BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Match: A0A0G4M735_9PEZI (Uncharacterized protein n=1 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4M735_9PEZI)

HSP 1 Score: 96.7 bits (239), Expect = 2.360e-21
Identity = 40/87 (45.98%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:   13 HILLQLNSTASSL-AVTSSEDINPKDYRAWYGLGQAYEILQMHLYATYYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERV 270
            H  ++L +T +++ +   + D+N +DYRAWYGLGQ YE+L+MH Y+ +YY++A  LRP+DA+MW+A+G+CL+R+G+  E I   +R 
Sbjct:  507 HEYVELKNTHAAIESYRRAVDVNRRDYRAWYGLGQTYEVLEMHTYSLWYYKKAAGLRPWDAKMWVAVGSCLQRMGREREGIKALKRA 593
[Close]
BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Match: R8BH31_PHAM7 (Putative anaphase-promoting complex subunit 8 protein n=1 Tax=Phaeoacremonium minimum (strain UCR-PA7) TaxID=1286976 RepID=R8BH31_PHAM7)

HSP 1 Score: 93.2 bits (230), Expect = 2.800e-21
Identity = 38/87 (43.68%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:   13 HILLQLNSTASSL-AVTSSEDINPKDYRAWYGLGQAYEILQMHLYATYYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERV 270
            H  ++L +T +++ +   + D+N +DYRAWYGLGQ YE+L+MH YA +YY++A  LRP+D +MW+A+G+CL+++G+  + I   +R 
Sbjct:    3 HEYVELKNTHAAIESYRRAVDVNRRDYRAWYGLGQTYEVLEMHTYALWYYKKAAGLRPWDGKMWMAIGSCLQKMGRERDGIKALKRA 89
[Close]
BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Match: H0EH95_GLAL7 (Putative Anaphase-promoting complex subunit 8 n=1 Tax=Glarea lozoyensis (strain ATCC 74030 / MF5533) TaxID=1104152 RepID=H0EH95_GLAL7)

HSP 1 Score: 94.7 bits (234), Expect = 6.230e-21
Identity = 37/67 (55.22%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   70 DINPKDYRAWYGLGQAYEILQMHLYATYYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERV 270
            D+N +DYRAWYGLGQ YE+L+MH YA +YY+RA  LRP+D +MW+A+G+CL+++G+  E I   +R 
Sbjct:   62 DVNRRDYRAWYGLGQTYEVLEMHAYALWYYKRAAGLRPWDGKMWMAVGSCLQKMGRNLEGIKALKRA 128
[Close]
BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Match: A0A2K0U696_TRIHA (Uncharacterized protein n=1 Tax=Trichoderma harzianum TaxID=5544 RepID=A0A2K0U696_TRIHA)

HSP 1 Score: 91.3 bits (225), Expect = 1.810e-20
Identity = 37/87 (42.53%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:   13 HILLQLNSTASSL-AVTSSEDINPKDYRAWYGLGQAYEILQMHLYATYYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERV 270
            H  ++L +T +++ +   + D+N +DYRAWYGLGQ YE+L+MH Y+ +YY++A  LRP+D +MW+A+G+CL+++G+  + I   +R 
Sbjct:    3 HEYVELKNTHAAIESYRRAVDVNRRDYRAWYGLGQTYEMLEMHTYSLWYYKKAAGLRPWDGKMWMAVGSCLQKMGRERDGIKALKRA 89
[Close]
BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Match: F0XRU3_GROCL (20S cyclosome subunit n=1 Tax=Grosmannia clavigera (strain kw1407 / UAMH 11150) TaxID=655863 RepID=F0XRU3_GROCL)

HSP 1 Score: 92.8 bits (229), Expect = 2.230e-20
Identity = 35/71 (49.30%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:   58 TSSEDINPKDYRAWYGLGQAYEILQMHLYATYYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERV 270
            T + D+N +DYRAWYGLGQ YE+L++H YA +YY++A  LRP+D +MW+A+G+CL+++G+  + I   +R 
Sbjct:  135 TRAVDVNRRDYRAWYGLGQTYEVLELHTYALWYYKKAAGLRPWDGKMWMAVGSCLQKMGRERDGIKALKRA 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59233.13435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1DEH9_CYCTE4.100e-2364.18Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A137QZ28_9AGAR5.460e-2365.67Anaphase-promoting complex subunit 8 n=1 Tax=Leuco... [more]
A0A8H6TBQ7_9AGAR6.380e-2254.76Anaphase-promoting complex subunit 8 n=1 Tax=Mycen... [more]
A0A7S2KD15_9STRA6.610e-2266.13Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1J8R5F0_9AGAM1.270e-2161.76GLTSCR1 domain-containing protein n=1 Tax=Rhizopog... [more]
A0A0G4M735_9PEZI2.360e-2145.98Uncharacterized protein n=1 Tax=Verticillium longi... [more]
R8BH31_PHAM72.800e-2143.68Putative anaphase-promoting complex subunit 8 prot... [more]
H0EH95_GLAL76.230e-2155.22Putative Anaphase-promoting complex subunit 8 n=1 ... [more]
A0A2K0U696_TRIHA1.810e-2042.53Uncharacterized protein n=1 Tax=Trichoderma harzia... [more]
F0XRU3_GROCL2.230e-2049.3020S cyclosome subunit n=1 Tax=Grosmannia clavigera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59233contigH-elongata_contig59233:454..1647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score94.0
Seed ortholog evalue4e-17
Seed eggNOG ortholog223192.XP_007916548.1
Preferred nameCDC23
KEGG koko:K03355
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0000151,GO:0000152,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0019538,GO:0019941,GO:0030071,GO:0030163,GO:0030332,GO:0031145,GO:0031331,GO:0031461,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.Anaphase-promoting complex subunit 8
EggNOG OGs2130R@147550,38EMD@33154,3NU5Y@4751,3QJQQ@4890,COG0013@1,KOG1155@2759
COG Functional cat.DO
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.0411253-CDS-H-elongata_contig59233:453..5501622930961.0411253-CDS-H-elongata_contig59233:453..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59233 454..550 -
1691679641.4577003-CDS-H-elongata_contig59233:453..5501691679641.4577003-CDS-H-elongata_contig59233:453..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59233 454..550 -
1622930961.0588534-CDS-H-elongata_contig59233:1468..16471622930961.0588534-CDS-H-elongata_contig59233:1468..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59233 1469..1647 -
1691679641.4728136-CDS-H-elongata_contig59233:1468..16471691679641.4728136-CDS-H-elongata_contig59233:1468..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59233 1469..1647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59233.13435.1prot_H-elongata_contig59233.13435.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59233 454..1647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59233.13435.1

>prot_H-elongata_contig59233.13435.1 ID=prot_H-elongata_contig59233.13435.1|Name=mRNA_H-elongata_contig59233.13435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
SIPSHILLQLNSTASSLAVTSSEDINPKDYRAWYGLGQAYEILQMHLYAT
YYYRRATHLRPYDARMWIAMGNCLERLGKRSEAISTYERVS*
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mRNA from alignment at H-elongata_contig59233:454..1647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59233.13435.1 ID=mRNA_H-elongata_contig59233.13435.1|Name=mRNA_H-elongata_contig59233.13435.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1194bp|location=Sequence derived from alignment at H-elongata_contig59233:454..1647- (Himanthalia elongata Himel1 dioecious)
TCCATCCCGTCCCATATTTTACTGCAGCTCAATAGCACCGCTTCCTCCCT
TGCCGTAACGTCGTCCGAAGACATCAACCCCAAGGACTACCGGGCGTGGT
ACGGGCTGGGGCAGGCCTACGAGATTCTTCAGATGCACCTTTATGCCACC
TACTACTATCGCAGGGCAACCCACCTCAGGTACTGTGGTACATGTACTGT
AAATGAATATGTAGTGGTACAGGTAGTGGTAATTGTACAGGTACTGTACA
GGCACATGTACTGTAGAGGTACATGTACAGGTACACATAGTAGCACATGT
ATAGCTAGATACTGGTAGTGGTACATCTACATGTACTGTAGAGGTACATG
TACAATAAGTGGTACGTGTACAAGTACAGGTAAAGGTACTGTGGAGGTAC
ATGTACTGTGGTACATGTACATGTACTGCGGTACATCTACTCTGGTACTG
ATACATGTACTCTGGTACTGGTACAGGTACTCTGGTACTGGTGCAGGTAC
TGTGGTACATGTACAGGTACAGGTACTGTAGAGGAAATCGGTCGATAAGT
AAAATAATGCTTGTTTGTCTGTGTGTATATATATTTATTAAATTGCACAT
CACGGCGCAATCTGGCCCTGTCGTCCTAGTCCTTCTAGGCTACTCTTGCA
TTGATCGGTCATCCCAATAGGGCAAATGATACATACACTCTCTACAGCCC
ATATCGATGTGTGTTTGTGTGTGTATACTAAATCACCCAGAATAACCGCT
TAACCTTTATGGAACTCGATCTGTTTTTACATACTAAATTCAATATAAAA
CTTGAAATCCAGGTCCAGAAGAGTTAATCCGGCTCTTCTGTCATGCTAGC
CATTCTAGGCTACTCGCATTGGTCCTCCCAATCGTGGATCAATGATATAT
GCTACAAATTATATCTGTGTAAATTTCTATTTATCCCCCCCCCCCCTTTC
TTTTTGAAAACCGGACGTATTTTGAGCGAAGATTTCGATGACAACCAATA
AATAAGCTTTTTACCTCTCATGACTCTTGTGAGCCCTGTATGTTGGCATA
ACGCCTCGGCTGGGCTGGGCCGGGCTGGGCTGGGCGGCGTCGTCAAGGCC
TTACGACGCGAGGATGTGGATCGCCATGGGGAACTGCTTGGAGAGGCTCG
GGAAACGCAGCGAGGCGATCAGCACTTACGAGCGGGTGAGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig59233:454..1647-

>mRNA_H-elongata_contig59233.13435.1 ID=mRNA_H-elongata_contig59233.13435.1|Name=mRNA_H-elongata_contig59233.13435.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig59233:454..1647- (Himanthalia elongata Himel1 dioecious)
TCCATCCCGTCCCATATTTTACTGCAGCTCAATAGCACCGCTTCCTCCCT
TGCCGTAACGTCGTCCGAAGACATCAACCCCAAGGACTACCGGGCGTGGT
ACGGGCTGGGGCAGGCCTACGAGATTCTTCAGATGCACCTTTATGCCACC
TACTACTATCGCAGGGCAACCCACCTCAGTCCATCCCGTCCCATATTTTA
CTGCAGCTCAATAGCACCGCTTCCTCCCTTGCCGTAACGTCGTCCGAAGA
CATCAACCCCAAGGACTACCGGGCGTGGTACGGGCTGGGGCAGGCCTACG
AGATTCTTCAGATGCACCTTTATGCCACCTACTACTATCGCAGGGCAACC
CACCTCAGGCCTTACGACGCGAGGATGTGGATCGCCATGGGGAACTGCTT
GGAGAGGCTCGGGAAACGCAGCGAGGCGATCAGCACTTACGAGCGGGTGA
GCTGAGCCTTACGACGCGAGGATGTGGATCGCCATGGGGAACTGCTTGGA
GAGGCTCGGGAAACGCAGCGAGGCGATCAGCACTTACGAGCGGGTGAGCT
GA
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