mRNA_H-elongata_contig58806.13379.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58806.13379.1
Unique NamemRNA_H-elongata_contig58806.13379.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Match: A0A4D9CZ36_9STRA (TP_methylase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ36_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.780e-9
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 VVIARELTKLHEDVFRGTLAEAVARYGPRGEKADPATGLPGGMKEARGEFTVVLGPH 171
            V++ARELTKLHED++RGTL EA+A +G + E+        G     RGEFT+VLGP 
Sbjct:  188 VLVARELTKLHEDLYRGTLTEALAHFGGKDEQGVSVEA--GAFAPLRGEFTLVLGPR 242          
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Match: W7TJ55_9STRA (Tetrapyrrole methylase family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ55_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 9.350e-9
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 VVIARELTKLHEDVFRGTLAEAVARYGPRGEKADPATGLPGGMKEARGEFTVVLGPH 171
            V++ARELTKLHED++RGTL EA+A +G + E+        G     RGEFT+VLGP 
Sbjct:  320 VLVARELTKLHEDLYRGTLTEALAHFGGKEEQGVSVEA--GAFAPLRGEFTLVLGPR 374          
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Match: A0A6H5JVG6_9PHAE (TP_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.950e-7
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 VVIARELTKLHEDVFRGTLAEAVARYGPRG 90
            VV+ARELTKLHED+FRGTLAEAVARYG  G
Sbjct:  408 VVLARELTKLHEDIFRGTLAEAVARYGGSG 437          
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Match: D8LLL3_ECTSI (TP_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL3_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 5.520e-7
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 1
Query:    1 VVIARELTKLHEDVFRGTLAEAVARYG 81
            VV+ARELTKLHED+FRGTLAEAVARYG
Sbjct:  412 VVLARELTKLHEDIFRGTLAEAVARYG 438          
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Match: A0A8J5XH93_DIALT (TP_methylase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XH93_DIALT)

HSP 1 Score: 50.4 bits (119), Expect = 1.700e-5
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 VVIARELTKLHEDVFRGTLAEAVARYGPRGEKADPATGLPGGMKEARGEFTVVLGPHVAPGSKG 192
            V+ ARELTKLHE++FRGTL  A+A Y      AD      GG    RGEFT+VL P  A  ++G
Sbjct:  280 VLCARELTKLHEELFRGTLDGALAHY------AD------GGAGVLRGEFTLVLLPDAALAARG 331          
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Match: A0A662DL05_9ACTN (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662DL05_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 2.120e-5
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 VVIARELTKLHEDVFRGTLAEAVARYGPRGEKADPATGLPGGMKEARGEFTVVL 162
            +V+ARELTKLHE+++RGTLAEA++ +G +                 RGEFTVV+
Sbjct:  183 IVLARELTKLHEEIWRGTLAEAISHWGDK--------------DNIRGEFTVVI 222          
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Match: A0A6I3WUR1_9ACTN (Ribosomal RNA small subunit methyltransferase I n=2 Tax=root TaxID=1 RepID=A0A6I3WUR1_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 2.170e-5
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 VVIARELTKLHEDVFRGTLAEAVARYGPRGEKADPATGLPGGMKEARGEFTVVL-GPHVAPGS 186
            VV+ARELTKLHE+V+RGTL EAVAR   R               E +GE+ +VL G  + PG+
Sbjct:  185 VVLARELTKLHEEVWRGTLGEAVARVAER---------------EPQGEYVIVLDGAELPPGA 232          
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Match: A0A7S1EN84_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EN84_HEMAN)

HSP 1 Score: 49.7 bits (117), Expect = 2.920e-5
Identity = 33/66 (50.00%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 VVIARELTKLHEDVFRGTLAEAVARYGPRGEKADPATGLPGGMKEARGEFTVVLGPHVAPGSKGGG 198
            VV+ RELTKLHE+ FRGT+ EA+       EK       PGG  E RGEFTVVL      G + GG
Sbjct:  174 VVLCRELTKLHEETFRGTVDEAIEHL----EK-------PGG--ETRGEFTVVLSEMEGEGDEEGG 226          
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Match: A0A523F113_9BACT (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523F113_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 2.920e-5
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 VVIARELTKLHEDVFRGTLAEAVARYGPRGEKADPATGLPGGMKEARGEFTVVL 162
            VV+ARELTKLHE+++RGTLA+A+  +G +              +  RGEFTVVL
Sbjct:  183 VVLARELTKLHEEIWRGTLADAIEHWGQQ--------------ENIRGEFTVVL 222          
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Match: A0A7Y1SS92_9ACTN (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1SS92_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 2.930e-5
Identity = 28/58 (48.28%), Postives = 34/58 (58.62%), Query Frame = 1
Query:    1 VVIARELTKLHEDVFRGTLAEAVARYGPRGEKADPATGLPGGMKEARGEFTVVLGPHV 174
            + + RELTKLHE+V+RGTL EAV  +  R               EARGEFTVV+G  V
Sbjct:  187 LAVTRELTKLHEEVWRGTLGEAVDEWSER---------------EARGEFTVVIGGAV 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58806.13379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A4D9CZ36_9STRA5.780e-952.63TP_methylase domain-containing protein n=1 Tax=Nan... [more]
W7TJ55_9STRA9.350e-952.63Tetrapyrrole methylase family protein n=2 Tax=Nann... [more]
A0A6H5JVG6_9PHAE2.950e-786.67TP_methylase domain-containing protein n=1 Tax=Ect... [more]
D8LLL3_ECTSI5.520e-792.59TP_methylase domain-containing protein n=1 Tax=Ect... [more]
A0A8J5XH93_DIALT1.700e-550.00TP_methylase domain-containing protein n=1 Tax=Dia... [more]
A0A662DL05_9ACTN2.120e-546.30Ribosomal RNA small subunit methyltransferase I n=... [more]
A0A6I3WUR1_9ACTN2.170e-547.62Ribosomal RNA small subunit methyltransferase I n=... [more]
A0A7S1EN84_HEMAN2.920e-550.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A523F113_9BACT2.920e-548.15Ribosomal RNA small subunit methyltransferase I n=... [more]
A0A7Y1SS92_9ACTN2.930e-548.28Ribosomal RNA small subunit methyltransferase I n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58806contigH-elongata_contig58806:3262..3471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue8e-10
Seed eggNOG ortholog2880.D8LLL3
KEGG koko:K07056
EggNOG free text desc.Tetrapyrrole (Corrin/Porphyrin) Methylases
EggNOG OGs2QQ7V@2759,COG0313@1
EC2.1.1.198
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.2976928-CDS-H-elongata_contig58806:3261..34711622930954.2976928-CDS-H-elongata_contig58806:3261..3471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58806 3262..3471 -
1691679638.9084048-CDS-H-elongata_contig58806:3261..34711691679638.9084048-CDS-H-elongata_contig58806:3261..3471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58806 3262..3471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58806.13379.1prot_H-elongata_contig58806.13379.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58806 3262..3471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58806.13379.1

>prot_H-elongata_contig58806.13379.1 ID=prot_H-elongata_contig58806.13379.1|Name=mRNA_H-elongata_contig58806.13379.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
VVIARELTKLHEDVFRGTLAEAVARYGPRGEKADPATGLPGGMKEARGEF
TVVLGPHVAPGSKGGGVKDA
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mRNA from alignment at H-elongata_contig58806:3262..3471-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58806.13379.1 ID=mRNA_H-elongata_contig58806.13379.1|Name=mRNA_H-elongata_contig58806.13379.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig58806:3262..3471- (Himanthalia elongata Himel1 dioecious)
GTCGTCATTGCCCGTGAGCTCACTAAACTCCACGAGGACGTGTTTCGCGG AACGCTGGCCGAGGCGGTGGCGCGATACGGACCGCGAGGCGAGAAAGCGG ACCCCGCGACGGGATTGCCCGGAGGGATGAAAGAAGCGAGGGGGGAGTTC ACGGTGGTGCTTGGACCGCACGTTGCGCCGGGGTCTAAGGGCGGTGGGGT CAAAGATGCG
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Coding sequence (CDS) from alignment at H-elongata_contig58806:3262..3471-

>mRNA_H-elongata_contig58806.13379.1 ID=mRNA_H-elongata_contig58806.13379.1|Name=mRNA_H-elongata_contig58806.13379.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig58806:3262..3471- (Himanthalia elongata Himel1 dioecious)
GTCGTCATTGCCCGTGAGCTCACTAAACTCCACGAGGACGTGTTTCGCGG
AACGCTGGCCGAGGCGGTGGCGCGATACGGACCGCGAGGCGAGAAAGCGG
ACCCCGCGACGGGATTGCCCGGAGGGATGAAAGAAGCGAGGGGGGAGTTC
ACGGTGGTGCTTGGACCGCACGTTGCGCCGGGGTCTAAGGGCGGTGGGGT
CAAAGATGCGGTCGTCATTGCCCGTGAGCTCACTAAACTCCACGAGGACG
TGTTTCGCGGAACGCTGGCCGAGGCGGTGGCGCGATACGGACCGCGAGGC
GAGAAAGCGGACCCCGCGACGGGATTGCCCGGAGGGATGAAAGAAGCGAG
GGGGGAGTTCACGGTGGTGCTTGGACCGCACGTTGCGCCGGGGTCTAAGG
GCGGTGGGGTCAAAGATGCG
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