mRNA_H-elongata_contig58544.13343.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58544.13343.1
Unique NamemRNA_H-elongata_contig58544.13343.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58544.13343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58544contigH-elongata_contig58544:2074..3240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size437
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58544.13343.1prot_H-elongata_contig58544.13343.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58544 2163..3240 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.3793418-UTR-H-elongata_contig58544:2073..21621622930949.3793418-UTR-H-elongata_contig58544:2073..2162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58544 2074..2162 +
1691679637.0660107-UTR-H-elongata_contig58544:2073..21621691679637.0660107-UTR-H-elongata_contig58544:2073..2162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58544 2074..2162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.3933926-CDS-H-elongata_contig58544:2162..23771622930949.3933926-CDS-H-elongata_contig58544:2162..2377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58544 2163..2377 +
1691679637.0740047-CDS-H-elongata_contig58544:2162..23771691679637.0740047-CDS-H-elongata_contig58544:2162..2377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58544 2163..2377 +
1622930949.4095142-CDS-H-elongata_contig58544:3107..32401622930949.4095142-CDS-H-elongata_contig58544:3107..3240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58544 3108..3240 +
1691679637.082104-CDS-H-elongata_contig58544:3107..32401691679637.082104-CDS-H-elongata_contig58544:3107..3240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58544 3108..3240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58544.13343.1

>prot_H-elongata_contig58544.13343.1 ID=prot_H-elongata_contig58544.13343.1|Name=mRNA_H-elongata_contig58544.13343.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MRRPKRGNDDRQHHHNLMDNQTCSGKIIVRLIAASSATAASSASSAAASA
VTCAGDILEGKKLLSVSKKNRREVVRMKVLDAGDEGKRKDRVEYRVDRVL
GQSAGDEEVSFIQLQ*
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mRNA from alignment at H-elongata_contig58544:2074..3240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58544.13343.1 ID=mRNA_H-elongata_contig58544.13343.1|Name=mRNA_H-elongata_contig58544.13343.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1167bp|location=Sequence derived from alignment at H-elongata_contig58544:2074..3240+ (Himanthalia elongata Himel1 dioecious)
GGCTATAAAACAGCGTGCTTGCAATTGGCTAATATCGCAGGGGGCGCAAA
GTATTTGGTCTGCTGCTCTGCGACGGGGTCCTTATCAGGATGCGTAGGCC
CAAGAGGGGTAACGACGATCGACAACATCATCATAATTTGATGGACAATC
AAACTTGTTCGGGAAAAATCATCGTTCGATTAATAGCAGCATCATCAGCA
ACAGCGGCATCATCAGCATCATCAGCAGCAGCATCAGCCGTGACTTGTGC
TGGAGACATTCTCGAAGGAAAGAAGTTGTTGAGCGTTTCGAAGAAAAATC
GAAGGTGGGCAATCGCGTGACAGTAGTTTCCGAGTGTATCTTCCCATTTT
CCTGCAAAGCTCACAACAAGCGCAGTGAGCCTTATTCCCGAGGGGGTGCG
CGGAACGTTTACCCCCCGTTTATTTTATTTCTTGCATGAAGGTTTCTCCT
TTATTCGGTGACTGTGTGCTGTGTCTGTGTGATGTGTCTGTGTGCTGTGT
CTGTGTGCTGTGTCTGTGTCTGCGTGCTGTGTGAGTGTATCCCGAATCGC
GAGTGTATGTGTGAGAGTGTGTTTGTATTCTTATTACCCTCGCATTAATA
ACTCGGTCCGCCGACCGGTCCCTTTATTATTTTATTTTAAAAAAGCAGTA
TAGTATAGTACAGTATAGTACAGTTTAGTACTACTCTATCCGTATAGTAT
ATACGACCTCCTCGTCGAGCGCATGTAGATGCTACTTGTACCTGTGACCC
TTGCAGACGGGGAATGAACTCGACAAACACACAAAATACTGCGGTACACT
GCGGTACACAAGCGATACAGTATATATATATATTTTTTAAACAGTATATA
TAGATATACAATACGAACTAAGGAAAATTAGAGCTGATATTGCTGATATC
AATATTTGGCCTCTCCATAGGGTCAGAAACGATAAACCAGTTTGCGGCTC
GATCCCCCTGTCGTCATGAATGGAGTTTACCGTCCGTCCGTCCGTTGTTG
TTGTTGCTGTTGCTTTTCCACGATATCACTATAGGGAAGTTGTGAGGATG
AAAGTACTGGATGCTGGAGATGAAGGAAAACGCAAGGATCGAGTGGAGTA
TCGGGTCGATAGAGTTTTGGGGCAAAGCGCTGGCGACGAAGAGGTGAGTT
TTATTCAGTTACAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig58544:2074..3240+

>mRNA_H-elongata_contig58544.13343.1 ID=mRNA_H-elongata_contig58544.13343.1|Name=mRNA_H-elongata_contig58544.13343.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig58544:2074..3240+ (Himanthalia elongata Himel1 dioecious)
ATGCGTAGGCCCAAGAGGGGTAACGACGATCGACAACATCATCATAATTT
GATGGACAATCAAACTTGTTCGGGAAAAATCATCGTTCGATTAATAGCAG
CATCATCAGCAACAGCGGCATCATCAGCATCATCAGCAGCAGCATCAGCC
GTGACTTGTGCTGGAGACATTCTCGAAGGAAAGAAGTTGTTGAGCGTTTC
GAAGAAAAATCGAAGATGCGTAGGCCCAAGAGGGGTAACGACGATCGACA
ACATCATCATAATTTGATGGACAATCAAACTTGTTCGGGAAAAATCATCG
TTCGATTAATAGCAGCATCATCAGCAACAGCGGCATCATCAGCATCATCA
GCAGCAGCATCAGCCGTGACTTGTGCTGGAGACATTCTCGAAGGAAAGAA
GTTGTTGAGCGTTTCGAAGAAAAATCGAAGGGAAGTTGTGAGGATGAAAG
TACTGGATGCTGGAGATGAAGGAAAACGCAAGGATCGAGTGGAGTATCGG
GTCGATAGAGTTTTGGGGCAAAGCGCTGGCGACGAAGAGGTGAGTTTTAT
TCAGTTACAGTAAGGAAGTTGTGAGGATGAAAGTACTGGATGCTGGAGAT
GAAGGAAAACGCAAGGATCGAGTGGAGTATCGGGTCGATAGAGTTTTGGG
GCAAAGCGCTGGCGACGAAGAGGTGAGTTTTATTCAGTTACAGTAA
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