mRNA_H-elongata_contig58539.13342.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58539.13342.1
Unique NamemRNA_H-elongata_contig58539.13342.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58539.13342.1 vs. uniprot
Match: A0A6H5L7V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V8_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.520e-53
Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 1 
Query:    1 DDDEDSDSEMAQLYVQAYACQVFRDDASAQAVEDGAHLRTLTTPQDPEGASLMLDRFDVRWMLDLADFNKGSCTSIPDTLREEEKKADSLRYTGLPTGDHSVLVEGLGMFAPTGSYAHD-RHGGLGGDEE 387
            D DEDSD E+ QLYVQ+YACQVFRDD +A AV+DGAHLR LT PQDPEG  LMLDRFD RWMLDL+DF+KG+  ++P  L  EE+KAD LRY GLP+GDHS++VEGLG FAPTGSYAH    GGLG +EE
Sbjct:   40 DSDEDSDPELQQLYVQSYACQVFRDDPAATAVQDGAHLRPLTVPQDPEGEPLMLDRFDARWMLDLSDFSKGTGFALPAKLAAEERKADGLRYDGLPSGDHSLVVEGLGQFAPTGSYAHGGSRGGLGDEEE 169
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BLAST of mRNA_H-elongata_contig58539.13342.1 vs. uniprot
Match: D7FJ62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ62_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.700e-49
Identity = 85/121 (70.25%), Postives = 99/121 (81.82%), Query Frame = 1 
Query:   25 EMAQLYVQAYACQVFRDDASAQAVEDGAHLRTLTTPQDPEGASLMLDRFDVRWMLDLADFNKGSCTSIPDTLREEEKKADSLRYTGLPTGDHSVLVEGLGMFAPTGSYAHDRHGGLGGDEE 387
            E+ QLYVQ+YACQVFRDD +A AV+DGAHLR LT PQDPEG  LMLDRFD RWMLDL+DF+KG+ +++P  L  EE+KAD LRY GLP+GDHS++VEGLG FAPTGSYAH    G  GDEE
Sbjct:   41 ELQQLYVQSYACQVFRDDPAATAVQDGAHLRPLTVPQDPEGEPLMLDRFDARWMLDLSDFSKGTGSALPVKLEAEERKADGLRYEGLPSGDHSLVVEGLGQFAPTGSYAHGGSRGGLGDEE 161
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BLAST of mRNA_H-elongata_contig58539.13342.1 vs. uniprot
Match: A0A835Z316_9STRA (SURP motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z316_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.310e-14
Identity = 52/136 (38.24%), Postives = 72/136 (52.94%), Query Frame = 1 
Query:    4 DDEDSDSEMAQLYVQAYACQVFRDDASAQAVEDGAHLRTLTTPQDPEGASLMLDRFDVRWMLDLADFNKGSCTSIPDTLR----------EEEKKADSL---RYTGLPTGDHSVLVEGLGMFAPTGSYAHDRHGGL 372
            D ++ D+   +++VQ YAC+V+R+DA AQ  EDG HLR + TP       L+LDR+D RW LD  D       ++PD             +E+  AD+L   RY      DHS+    LG +AP+GSY    HG L
Sbjct:   13 DADEPDAFQERIFVQGYACEVYRNDALAQQFEDGTHLRRMLTPF-VSAEPLLLDRYDGRWNLDPTDL-----ATLPDGRETESDTEWIADDEDVDADTLNQLRYADAVEEDHSIERLWLGKYAPSGSYVQG-HGWL 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58539.13342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L7V8_9PHAE3.520e-5370.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ62_ECTSI1.700e-4970.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z316_9STRA1.310e-1438.24SURP motif domain-containing protein n=1 Tax=Tribo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58539contigH-elongata_contig58539:1575..3390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue8.2e-42
Seed eggNOG ortholog2880.D7FJ62
Preferred nameSFSWAP
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000395,GO:0000398,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0033119,GO:0034622,GO:0034641,GO:0043170,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0045292,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048519,GO:0048523,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903311,GO:1903312
EggNOG free text desc.mRNA 5'-splice site recognition
EggNOG OGsKOG1847@1,KOG1847@2759
Ec32 ortholog descriptionSWAP/Surp
Ec32 orthologEc-10_000230.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size399
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58539.13342.1prot_H-elongata_contig58539.13342.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58539 1602..3390 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.2884262-UTR-H-elongata_contig58539:1574..16011622930949.2884262-UTR-H-elongata_contig58539:1574..1601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58539 1575..1601 +
1691679637.0166712-UTR-H-elongata_contig58539:1574..16011691679637.0166712-UTR-H-elongata_contig58539:1574..1601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58539 1575..1601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.3094544-CDS-H-elongata_contig58539:1601..17091622930949.3094544-CDS-H-elongata_contig58539:1601..1709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58539 1602..1709 +
1691679637.0324643-CDS-H-elongata_contig58539:1601..17091691679637.0324643-CDS-H-elongata_contig58539:1601..1709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58539 1602..1709 +
1622930949.3211308-CDS-H-elongata_contig58539:2496..26101622930949.3211308-CDS-H-elongata_contig58539:2496..2610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58539 2497..2610 +
1691679637.0438213-CDS-H-elongata_contig58539:2496..26101691679637.0438213-CDS-H-elongata_contig58539:2496..2610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58539 2497..2610 +
1622930949.3357604-CDS-H-elongata_contig58539:3240..33901622930949.3357604-CDS-H-elongata_contig58539:3240..3390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58539 3241..3390 +
1691679637.0576131-CDS-H-elongata_contig58539:3240..33901691679637.0576131-CDS-H-elongata_contig58539:3240..3390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58539 3241..3390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58539.13342.1

>prot_H-elongata_contig58539.13342.1 ID=prot_H-elongata_contig58539.13342.1|Name=mRNA_H-elongata_contig58539.13342.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MAQLYVQAYACQVFRDDASAQAVEDGAHLRTLTTPQDPEGASLMLDRFDV
RWMLDLADFNKGSCTSIPDTLREEEKKADSLRYTGLPTGDHSVLVEGLGM
FAPTGSYAHDRHGGLGGDEEAST*
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mRNA from alignment at H-elongata_contig58539:1575..3390+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58539.13342.1 ID=mRNA_H-elongata_contig58539.13342.1|Name=mRNA_H-elongata_contig58539.13342.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1816bp|location=Sequence derived from alignment at H-elongata_contig58539:1575..3390+ (Himanthalia elongata Himel1 dioecious)
GACGATGATGAGGACAGCGACTCAGAGATGGCACAGCTTTACGTCCAGGC
ATACGCGTGTCAAGTTTTCCGAGACGACGCTTCTGCGCAGGCAGTGGAGG
ATGGTGCTCACCTCCGAACACTGACAACACCACAGGTTAGGGGTTTCCAC
TGCTACGGTCTGACTTCATGATATAGGGAAACATTTAATTCGTCTTCACG
TTGAATGATTTTGTGCTCAAAGATAGCAATGTCCGCATTCGAACCTGACG
ATAGTTGGTCCCCTGGACTGCACCTCTCACGGTGCTAAGAAAGCGTGGAT
GTTCGAAGGGTTGGAATGGGCTCATGTGATTTTAATAGGGTTGTGAGGTT
GAAGCGAGGCAATGCTACCCTTCACTCTTTACCATTTACCCCGCTTGCTG
CGTCGAGTGTGAGTGCGAGTGCTTGACGCCTGAGTACACCTCTCCGGATG
GAAACGATGCGATCGACAAATCACTCTTATAAAAATGAAGTCACTGATTT
GCTAGATACTTTGCGTTGCTTGTACAGCGATGACCTTCTATAGAGTTGGT
GGCGAGGAACGGCCCTTCAAATGGTCGTGAGATACTCCAATCCAACGTAC
CGTCCCATCGGAGAGCTGGGCGATCTAACCATTCTAGTAGAGCATTAGAG
TGTGATATTAGAATGTAGTTAATCGGCGTGACCCCCAAAATAAATCATGT
CGATTCGAGATCCTGATCGACTGCGACTTTCAAATAGGCGAGTAAACTAC
CGACTGCAAATAATTAGGCTTACTGTACAGTACCCACACCTTTTACTATT
AGAATGCGCGGGCTGGGCTTACTCTCCATCCTCTTTCCCGTCACCTTTGA
ACATCCTTTGAACATCCTTTGAACATCCTTTGAACATTGCCCTCGTCCTC
GTCACGGCTCCCTGTGGTATAGGATCCCGAAGGCGCATCTTTGATGCTGG
ATCGGTTTGACGTACGTTGGATGCTGGACCTCGCGGACTTCAACAAAGGT
AGTTGCACAAGCATCCCCGACACACTCAGGGAAGAGGTGAGAATATTGTT
GCCCCCATCAAGTTTGGACCATCAAATTCGCCCCCACTTCAACTATCTTG
TATATCTGAGGCGGGGAATCTTGCGCCAAGTAGCCAGTGTCCCCGATCCC
GTTTATGCTTGAGAGGTAAAGCTTCCAACCGTAATAGTGCTACGCGTTCA
ACTCGACATCGGGGCATTCTAGGACGTGGAAATCCTAAATATATTCAAAG
GTGTAAAAGTAGATTTTCGAGATTGATACCACCTTTGCAGCTTTATTGAG
AAACTTATGGAGAGTGTTCCATCAATTTCAGATAATTTCACTTCAATTTT
ATCCAATCTAGTCAAACCAATCCCCAGGCTGTGCCCGGGCTGTTTCTGTT
GATTTTTTTTTATGTGCGATGTCTCACCTCATCTGTTTTTGTTGAAATGT
CTCACCTGTTTTTGTGGAAATGTCTCACCTGTTTTTGTTGAAATGTCTCA
CCTGTTTTTATTGAAATCTCTCTCACCTGTTTCTGTTGAAATGTCTCACC
TGCGGCAATCAAATCCAATCGTTTGGGCTGTAAATGACGGGGGGGTGAGT
TCTTGGATCCTAGTCGCAGCGTTCGACACCTCGCAAATACGTTCTGCTGT
GCTGGTTTCCCCACAGGAGAAAAAGGCGGATAGCCTGAGGTACACCGGCC
TGCCCACCGGTGATCACTCGGTTTTGGTAGAGGGATTGGGGATGTTCGCT
CCGACGGGGAGCTACGCGCATGACCGCCATGGTGGCTTGGGGGGCGACGA
GGAGGCAAGTACCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig58539:1575..3390+

>mRNA_H-elongata_contig58539.13342.1 ID=mRNA_H-elongata_contig58539.13342.1|Name=mRNA_H-elongata_contig58539.13342.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig58539:1575..3390+ (Himanthalia elongata Himel1 dioecious)
ATGGCACAGCTTTACGTCCAGGCATACGCGTGTCAAGTTTTCCGAGACGA
CGCTTCTGCGCAGGCAGTGGAGGATGGTGCTCACCTCCGAACACTGACAA
CACCACAGATGGCACAGCTTTACGTCCAGGCATACGCGTGTCAAGTTTTC
CGAGACGACGCTTCTGCGCAGGCAGTGGAGGATGGTGCTCACCTCCGAAC
ACTGACAACACCACAGGATCCCGAAGGCGCATCTTTGATGCTGGATCGGT
TTGACGTACGTTGGATGCTGGACCTCGCGGACTTCAACAAAGGTAGTTGC
ACAAGCATCCCCGACACACTCAGGGAAGAGGATCCCGAAGGCGCATCTTT
GATGCTGGATCGGTTTGACGTACGTTGGATGCTGGACCTCGCGGACTTCA
ACAAAGGTAGTTGCACAAGCATCCCCGACACACTCAGGGAAGAGGAGAAA
AAGGCGGATAGCCTGAGGTACACCGGCCTGCCCACCGGTGATCACTCGGT
TTTGGTAGAGGGATTGGGGATGTTCGCTCCGACGGGGAGCTACGCGCATG
ACCGCCATGGTGGCTTGGGGGGCGACGAGGAGGCAAGTACCTAAGAGAAA
AAGGCGGATAGCCTGAGGTACACCGGCCTGCCCACCGGTGATCACTCGGT
TTTGGTAGAGGGATTGGGGATGTTCGCTCCGACGGGGAGCTACGCGCATG
ACCGCCATGGTGGCTTGGGGGGCGACGAGGAGGCAAGTACCTAA
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