mRNA_H-elongata_contig58472.13333.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58472.13333.1
Unique NamemRNA_H-elongata_contig58472.13333.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58472.13333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58472contigH-elongata_contig58472:1875..2402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size444
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.4823585-UTR-H-elongata_contig58472:1874..19581622930948.4823585-UTR-H-elongata_contig58472:1874..1958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58472 1875..1958 +
1691679636.6688063-UTR-H-elongata_contig58472:1874..19581691679636.6688063-UTR-H-elongata_contig58472:1874..1958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58472 1875..1958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.4990652-CDS-H-elongata_contig58472:1958..24021622930948.4990652-CDS-H-elongata_contig58472:1958..2402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58472 1959..2402 +
1691679636.6798804-CDS-H-elongata_contig58472:1958..24021691679636.6798804-CDS-H-elongata_contig58472:1958..2402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58472 1959..2402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58472.13333.1prot_H-elongata_contig58472.13333.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58472 1959..2402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58472.13333.1

>prot_H-elongata_contig58472.13333.1 ID=prot_H-elongata_contig58472.13333.1|Name=mRNA_H-elongata_contig58472.13333.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MDARRSNPKNFSYGDYFNPRRPHTPDEFTLEMKVDVERLRMEIILSQPAP
PRCDELTQCAVVETGLKESEAEQPSEVPLEGEIFSTLEPRLYNFLDFNST
SPEQEYFRLHRPHVEVDDEKEATSYQVTVHDEFARLTMMPQRQRTTDW
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mRNA from alignment at H-elongata_contig58472:1875..2402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58472.13333.1 ID=mRNA_H-elongata_contig58472.13333.1|Name=mRNA_H-elongata_contig58472.13333.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at H-elongata_contig58472:1875..2402+ (Himanthalia elongata Himel1 dioecious)
CAAATGCGTCGCTTATAAAACCAACATGAATTTAAAGTCTGGAGAAGAGA
ATTTGGCTTCGAATACCTTGACACGGCAGCTGATATGGATGCCAGGCGTT
CGAATCCGAAGAATTTTTCCTACGGTGACTACTTTAATCCAAGGCGTCCA
CACACTCCAGACGAATTCACACTTGAGATGAAGGTGGACGTCGAGAGGTT
AAGGATGGAAATCATCCTTTCGCAACCTGCGCCACCGCGATGTGATGAAT
TGACGCAATGCGCCGTGGTCGAAACGGGGTTAAAAGAATCTGAGGCGGAA
CAGCCGTCTGAGGTGCCATTGGAAGGAGAAATATTTTCCACTCTTGAACC
AAGACTGTACAACTTTTTGGATTTCAACTCAACAAGCCCCGAGCAGGAAT
ATTTCCGGCTTCATCGACCCCATGTCGAGGTGGACGACGAGAAAGAAGCC
ACCAGTTATCAAGTCACTGTTCACGACGAGTTTGCGAGACTAACTATGAT
GCCGCAACGACAAAGGACGACAGATTGG
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Coding sequence (CDS) from alignment at H-elongata_contig58472:1875..2402+

>mRNA_H-elongata_contig58472.13333.1 ID=mRNA_H-elongata_contig58472.13333.1|Name=mRNA_H-elongata_contig58472.13333.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig58472:1875..2402+ (Himanthalia elongata Himel1 dioecious)
ATGGATGCCAGGCGTTCGAATCCGAAGAATTTTTCCTACGGTGACTACTT
TAATCCAAGGCGTCCACACACTCCAGACGAATTCACACTTGAGATGAAGG
TGGACGTCGAGAGGTTAAGGATGGAAATCATCCTTTCGCAACCTGCGCCA
CCGCGATGTGATGAATTGACGCAATGCGCCGTGGTCGAAACGGGGTTAAA
AGAATCTGAGGCGGAACAGCCGTCTGAGGTGCCATTGGAAGGAGAAATAT
TTTCCACTCTTGAACCAAGACTGTACAACTTTTTGGATTTCAACTCAACA
AGCCCCGAGCAGGAATATTTCCGGCTTCATCGACCCCATGTCGAGGTGGA
CGACGAGAAAGAAGCCACCAGTTATCAAGTCACTGTTCACGACGAGTTTG
CGAGACTAACTATGATGCCGCAACGACAAAGGACGACAGATTGGATGGAT
GCCAGGCGTTCGAATCCGAAGAATTTTTCCTACGGTGACTACTTTAATCC
AAGGCGTCCACACACTCCAGACGAATTCACACTTGAGATGAAGGTGGACG
TCGAGAGGTTAAGGATGGAAATCATCCTTTCGCAACCTGCGCCACCGCGA
TGTGATGAATTGACGCAATGCGCCGTGGTCGAAACGGGGTTAAAAGAATC
TGAGGCGGAACAGCCGTCTGAGGTGCCATTGGAAGGAGAAATATTTTCCA
CTCTTGAACCAAGACTGTACAACTTTTTGGATTTCAACTCAACAAGCCCC
GAGCAGGAATATTTCCGGCTTCATCGACCCCATGTCGAGGTGGACGACGA
GAAAGAAGCCACCAGTTATCAAGTCACTGTTCACGACGAGTTTGCGAGAC
TAACTATGATGCCGCAACGACAAAGGACGACAGATTGG
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