mRNA_H-elongata_contig58249.13306.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58249.13306.1
Unique NamemRNA_H-elongata_contig58249.13306.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58249.13306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58249contigH-elongata_contig58249:394..2895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size432
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58249.13306.1prot_H-elongata_contig58249.13306.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58249 394..2895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.9331996-CDS-H-elongata_contig58249:393..5241622930944.9331996-CDS-H-elongata_contig58249:393..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58249 394..524 +
1691679635.330717-CDS-H-elongata_contig58249:393..5241691679635.330717-CDS-H-elongata_contig58249:393..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58249 394..524 +
1622930944.9499202-CDS-H-elongata_contig58249:990..10651622930944.9499202-CDS-H-elongata_contig58249:990..1065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58249 991..1065 +
1691679635.349132-CDS-H-elongata_contig58249:990..10651691679635.349132-CDS-H-elongata_contig58249:990..1065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58249 991..1065 +
1622930944.9695857-CDS-H-elongata_contig58249:2669..28951622930944.9695857-CDS-H-elongata_contig58249:2669..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58249 2670..2895 +
1691679635.3618486-CDS-H-elongata_contig58249:2669..28951691679635.3618486-CDS-H-elongata_contig58249:2669..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58249 2670..2895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58249.13306.1

>prot_H-elongata_contig58249.13306.1 ID=prot_H-elongata_contig58249.13306.1|Name=mRNA_H-elongata_contig58249.13306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
VKTQGADPSWKSTKGATALHFACNAGHYDCTIQLLRVGVDVDAGNSTGTT
PLIIAAFGAHISCVGLLLEHGADPNVRDNLGRKAGDSLCELDVHRELGEV
AAGGGATIAGNEMFSATRALLGVARAQRAAVAQSGSSLVGTGTG
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mRNA from alignment at H-elongata_contig58249:394..2895+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58249.13306.1 ID=mRNA_H-elongata_contig58249.13306.1|Name=mRNA_H-elongata_contig58249.13306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2502bp|location=Sequence derived from alignment at H-elongata_contig58249:394..2895+ (Himanthalia elongata Himel1 dioecious)
GTGAAAACGCAGGGAGCAGACCCTTCTTGGAAGTCCACCAAGGGGGCGAC
GGCTCTACATTTCGCCTGCAACGCGGGGCATTACGACTGCACCATACAGC
TCCTCAGGGTGGGGGTCGACGTCGATGCCGGGTACGGAGGGTGTGCATAC
GCCTCCCCGTCCCCGTCCCCCTTTGAATACCGCACGGTGTTTGGATCTAC
TCAAAATGAGTGCAGTGTGCGGTGTGTGGCGTTGTAATGATGTCAATAAT
TGTTTGATGAGGGGAGGGTCGAATGGAACCACTAGAGTCACGAGGGTCTG
TCTTGTGGTCCAAGAGAAACAGAGGGAGGACAACGTTTTTATTTTATTTT
TTTATCTGTTCACTCGCCACCTAGAGCCACGTGCCGCTTGTTGAAGTTAA
TCCAACAGACGATGTTTTTTAAATGGTTCGATACGTAGGTCTGTCTGGCC
GTCCGCGGTTGGCGTAGGTAGAGTGGACGGTGGGCGTGGGTCGATCTTGG
TCCACCAGAGCTACACGCGTGGACACCGCCAAAGAGCTTCGGGGCGTAAG
CGCTGATTTCCTCGCGTTCCCGTCCCACCGTAACGCCTTTCGTGTAGGAA
CTCCACGGGTACAACGCCGCTGATCATCGCAGCGTTCGGCGCCCACATCA
GCTGCGTTGGGCTACTCTTGGAGTGAGTCAGAGTAGGGCGCAGTGTTGTG
CAGTATTGTGCGTGTGAAATGTCAACCCACGTCAGTCAGTTCTCCTCTCC
CAGATCTTCATCCCGTACTGTTAAATAACCCATACGTCCACTTTTATCCC
ATTCAATTCCGCCCAATATGTCTTCATCAGATACTATCCTATAGTGCAAG
GCACTTGATCTTTTGTCCCGATATTATCTCACCTTACAATAGTGGATATG
GGGAAAGAGAGGCGCATAATAATTGGTCCATGGGGTTACCTCAATAGGCT
GCACCCGTTGCTCAAACTACCTTGAGGACTGCTGGCTAAGTGTCGGCGGA
CTGTCGGTGATGTTGTCATTCCAGTGATTCTGGAAGTCAGGCCTGTGGAC
GCACCAGCCGGGGTCACACAAGATTTTTCTACCTTCCTTCTGCGGTACTA
GCCTTATTTTTTTTATCGCAAGAAGGATTCAGCCGTCAGCCGTCATAGTC
CATTTCCCTCGCCGACCATGAAGCCGAATTTTGTGCACCAACGAAATAAT
CGTTCTCCACTTTCTTGTTGAACATGATAAAAAATCCCAGTTCGTTTGAC
TTCGCCAAGATTCGAACCCATGTCCCAAATTTAGAAGGTTACGAGGATAC
CAACTGAACCACCGGGGTGACCGGTGCCAAACCGAAACACAGGCGGGAAA
CGTGAATGGGGCTAATTAATTTGTTTCGTATTTTAATGCTGGTATTGTAA
ACTTTCGGTCGTGAACGCCATCGGCACGAGATTGCGTGACCTTGTGAACT
CGGGATTGACCCGATGGCGGTTGACGGTAGAGATGGACGCCTTCGCAGAA
AACGAGGAGGATCGAAAGGATCTTGGGAGTACACACCAGATTCAGCGTGG
GTTGAGAAAATGAGCAGGCTGACGCGGGACGGGACTGCCGAACCTATGTC
GCGAGGCCAAATTCTCAGGCGCAAATGGGGACAGGCGAAAAACAATTTCC
CTGTTCAATTGGCCAGAAGAAGGAAGCAACCAAATCCGGTTGAGCTATTC
TCTGCTATATGCGTTGACCGCACATAATCTCCCATCCCACCCAATCATAT
ATATCCCAGCATATCCGAAACACGGGGAATGCCATCTATCTTATCTCTAA
CCTAATCCCACCCTATACCACCCCGGGTCGTCTTGTCCCGTTCCAACATA
CGCCATGTTTAGTTCTATGAACGTGTTCTTCTGCATAATATTATCTCCCA
TATCATGAACCTCCATTCCAATCTAGACCGCACCGTATGCATCACGCATG
AAATCCATACATCATCCAGCTTGTTTCCATCTTACATAGTCTCCCATATC
GTCCCACGGAACCTCATATTGTCCGAACCTTTGTACACCCCCACTCTCAG
CACACTATCCCACCCAACAATTATCCTGCCCTGTTTTCATCCCGTCTGAT
CTGATCTAATCCACTACACGTCAATTCCGTAATTCCATTTCAATTTCCGT
TGTATACACACTTTCTGGTTCAGCTTTATCCCAAACAATCCCATCTCCAG
ACATCCCATAATACGTTTAATCATATTACATCATGCCCCATGCCATCCCA
TCCCATCCCTTCCTCCCTGTGGGTAGGCATGGCGCAGATCCAAACGTGCG
CGACAATCTCGGCCGCAAGGCCGGCGACAGCCTCTGCGAGTTGGACGTCC
ATCGGGAATTGGGGGAAGTGGCGGCCGGAGGAGGAGCGACCATTGCGGGA
AACGAAATGTTCTCGGCGACACGTGCTCTTTTGGGTGTCGCGCGCGCCCA
GCGGGCTGCAGTTGCGCAGAGTGGCTCCAGCTTGGTCGGGACGGGCACAG
GC
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Coding sequence (CDS) from alignment at H-elongata_contig58249:394..2895+

>mRNA_H-elongata_contig58249.13306.1 ID=mRNA_H-elongata_contig58249.13306.1|Name=mRNA_H-elongata_contig58249.13306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig58249:394..2895+ (Himanthalia elongata Himel1 dioecious)
GTGAAAACGCAGGGAGCAGACCCTTCTTGGAAGTCCACCAAGGGGGCGAC
GGCTCTACATTTCGCCTGCAACGCGGGGCATTACGACTGCACCATACAGC
TCCTCAGGGTGGGGGTCGACGTCGATGCCGGGTGAAAACGCAGGGAGCAG
ACCCTTCTTGGAAGTCCACCAAGGGGGCGACGGCTCTACATTTCGCCTGC
AACGCGGGGCATTACGACTGCACCATACAGCTCCTCAGGGTGGGGGTCGA
CGTCGATGCCGGGAACTCCACGGGTACAACGCCGCTGATCATCGCAGCGT
TCGGCGCCCACATCAGCTGCGTTGGGCTACTCTTGGAGAACTCCACGGGT
ACAACGCCGCTGATCATCGCAGCGTTCGGCGCCCACATCAGCTGCGTTGG
GCTACTCTTGGAGCATGGCGCAGATCCAAACGTGCGCGACAATCTCGGCC
GCAAGGCCGGCGACAGCCTCTGCGAGTTGGACGTCCATCGGGAATTGGGG
GAAGTGGCGGCCGGAGGAGGAGCGACCATTGCGGGAAACGAAATGTTCTC
GGCGACACGTGCTCTTTTGGGTGTCGCGCGCGCCCAGCGGGCTGCAGTTG
CGCAGAGTGGCTCCAGCTTGGTCGGGACGGGCACAGGCGCATGGCGCAGA
TCCAAACGTGCGCGACAATCTCGGCCGCAAGGCCGGCGACAGCCTCTGCG
AGTTGGACGTCCATCGGGAATTGGGGGAAGTGGCGGCCGGAGGAGGAGCG
ACCATTGCGGGAAACGAAATGTTCTCGGCGACACGTGCTCTTTTGGGTGT
CGCGCGCGCCCAGCGGGCTGCAGTTGCGCAGAGTGGCTCCAGCTTGGTCG
GGACGGGCACAGGC
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