mRNA_H-elongata_contig58111.13286.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58111.13286.1
Unique NamemRNA_H-elongata_contig58111.13286.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: D8LDC6_ECTSI (Eukaryotic initiation factor 4E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDC6_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 4.610e-56
Identity = 81/105 (77.14%), Postives = 92/105 (87.62%), Query Frame = 1
Query:   64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
            RWALWYDN+KLKAATETW +NLKHI+AF+TV++FWALFNNV PPSML++ SNYSVFKEGVKPMWED  N QGGK VLT+KGED+ QLD WWL  VL+AIGE LE 
Sbjct:   24 RWALWYDNAKLKAATETWADNLKHILAFETVQEFWALFNNVMPPSMLSVQSNYSVFKEGVKPMWEDTANRQGGKFVLTVKGEDLPQLDQWWLHAVLSAIGETLES 128          
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A1V9YGZ3_9STRA (Eukaryotic initiation factor 4E n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGZ3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.020e-41
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   28 PFPLLPSPPGITRWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
            P  ++P  P   +W LWYDN K K ATETWEENLK I  FDTVEDFW LFNNV PP+ L+  SNY +FKEG++PMWED  N +GGK +LT   +   +LD  W+  +LA IGE LED
Sbjct:   40 PAEIVPKHPLQHKWVLWYDNPKKKLATETWEENLKKIYTFDTVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRARLDDSWMHVMLALIGEALED 156          
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A067CRQ2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRQ2_SAPPC)

HSP 1 Score: 142 bits (359), Expect = 2.900e-40
Identity = 68/126 (53.97%), Postives = 85/126 (67.46%), Query Frame = 1
Query:    1 EKWSVVVLNPFPLLPSPPGITRWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
            E+ + +V  P  L P  P   +W LWYDN K K ATE+WEENLK I  F+TVEDFW LFNNV PP+ L+  SNY +FKEG++PMWED  N +GGK +LT   +   +LD  W+  +LA IGE LED
Sbjct:   19 EEAAPIVAVPMELGPKHPLQHKWVLWYDNPKKKLATESWEENLKLIYTFETVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRPRLDDSWMHVMLALIGEALED 144          
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A485L311_9STRA (Aste57867_15132 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L311_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.270e-39
Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
            RW LWYDN K K   E+WEENLK + +FDTVEDFW +FNN+ PPS L+  SNY +FKEG++PMWED  N +GGK VLT + +   +LD  W+  +LA IGE LED
Sbjct:   39 RWVLWYDNPKKKLPNESWEENLKVVYSFDTVEDFWCMFNNILPPSKLSTGSNYHLFKEGIRPMWEDPINAKGGKWVLTNQRQRRARLDDCWMHTMLALIGECLED 143          
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: W4G8U0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8U0_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.470e-39
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
            RW LWYDN K K A E+WEENLK +  FDTVEDFW +FNN+ PP+ L + SNY +FKEG++PMWED  N +GGK VLT   +   +LD  W+  +LA IGE LED
Sbjct:   51 RWVLWYDNPKKKLANESWEENLKVVYTFDTVEDFWGMFNNILPPTKLLVGSNYHLFKEGIRPMWEDPINAKGGKWVLTNNRQRRARLDDAWMNTMLALIGECLED 155          
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A024UKG8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKG8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.540e-38
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 1
Query:   64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
            +W LWYDN K K A+ETWEE+LK + +FDTVEDFW +FNN+ PP+ L + SNY +FKEG++PMWED  N +GGK VLT   +   +LD  W+  +LA IGE LED
Sbjct:   51 KWVLWYDNPKKKLASETWEESLKVVYSFDTVEDFWGMFNNILPPTKLHVGSNYHLFKEGIRPMWEDPINAKGGKWVLTNNRQRRPRLDDAWMNTMLALIGECLED 155          
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A6G0X5M7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5M7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.730e-37
Identity = 59/105 (56.19%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
            RW LWYDN K K   E+WEENLK +  FDTVEDFW +FNN+ PP+ L   SNY +FK G++PMWED  N +GGK VLT   +   +LD  W+  +LA IGE LED
Sbjct:   58 RWVLWYDNPKKKLPNESWEENLKTVYTFDTVEDFWCMFNNILPPTKLASGSNYHLFKHGIRPMWEDPINAKGGKWVLTNSRQRRARLDDAWMHTMLALIGECLED 162          
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A7S2JX99_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JX99_9STRA)

HSP 1 Score: 133 bits (334), Expect = 9.620e-37
Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = 1
Query:   64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTL--KGEDMGQLDHWWLRGVLAAIGEILED 378
            +W LWYDN +  A   +W+ENLK+   FDT E+FW +FNNVKP S L+ NSNY +FK+GV+PMWED  N +GGK VLT+  K    G+ D WWL  VLA +GE L++
Sbjct:   17 KWVLWYDNPRQAAPGASWKENLKYCGEFDTAENFWRIFNNVKPASQLSTNSNYHIFKKGVEPMWEDPMNAKGGKWVLTIPKKESKAGRCDEWWLHTVLAVVGETLDE 123          
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A8K1FLQ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLQ1_PYTOL)

HSP 1 Score: 133 bits (335), Expect = 1.280e-36
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
            RW LWYDN K + + ETWEENLK+I  FDTVEDFW L+NNV  P+ L++ SNY +FKEG++PMWED  N +GGK + T       +LD  WL  +L+ IGE L D
Sbjct:   41 RWTLWYDNPKKRNSAETWEENLKNIFTFDTVEDFWCLYNNVLTPTKLSVGSNYHLFKEGIRPMWEDPINAKGGKWIFTNARSRRARLDECWLHVMLSLIGESLHD 145          
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A836CHN5_9STRA (Translation initiation factor eIF 4e-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN5_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.430e-36
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 1
Query:   67 WALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILE 375
            W LW+DN KLK   E+WE+ LK+IM+F TVEDFW L+ N+ P S +   SNYSVFK G+KPMWED  N +GGK VLT+   +   +D WWL  +LA IG  LE
Sbjct:   39 WTLWFDNPKLKKPEESWEDTLKNIMSFSTVEDFWCLYGNILPASRIPSGSNYSVFKHGIKPMWEDPQNAKGGKWVLTVGRGERKHMDEWWLHSLLAVIGGTLE 141          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDC6_ECTSI4.610e-5677.14Eukaryotic initiation factor 4E n=2 Tax=Ectocarpus... [more]
A0A1V9YGZ3_9STRA5.020e-4157.26Eukaryotic initiation factor 4E n=1 Tax=Achlya hyp... [more]
A0A067CRQ2_SAPPC2.900e-4053.97Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485L311_9STRA2.270e-3958.10Aste57867_15132 protein n=1 Tax=Aphanomyces stella... [more]
W4G8U0_9STRA4.470e-3958.10Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UKG8_9STRA2.540e-3857.14Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0X5M7_9STRA1.730e-3756.19Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2JX99_9STRA9.620e-3754.21Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A8K1FLQ1_PYTOL1.280e-3655.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A836CHN5_9STRA2.430e-3655.34Translation initiation factor eIF 4e-like domain-c... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58111contigH-elongata_contig58111:641..1874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue9.3e-44
Seed eggNOG ortholog2880.D8LDC6
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1670@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryother localisation
Exons3
Model size396
Cds size396
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58111.13286.1prot_H-elongata_contig58111.13286.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58111 641..1874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.5816689-CDS-H-elongata_contig58111:640..7601622930942.5816689-CDS-H-elongata_contig58111:640..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58111 641..760 -
1691679634.340554-CDS-H-elongata_contig58111:640..7601691679634.340554-CDS-H-elongata_contig58111:640..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58111 641..760 -
1622930942.5989578-CDS-H-elongata_contig58111:1383..14521622930942.5989578-CDS-H-elongata_contig58111:1383..1452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58111 1384..1452 -
1691679634.351076-CDS-H-elongata_contig58111:1383..14521691679634.351076-CDS-H-elongata_contig58111:1383..1452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58111 1384..1452 -
1622930942.6204872-CDS-H-elongata_contig58111:1667..18741622930942.6204872-CDS-H-elongata_contig58111:1667..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58111 1668..1874 -
1691679634.359083-CDS-H-elongata_contig58111:1667..18741691679634.359083-CDS-H-elongata_contig58111:1667..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58111 1668..1874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58111.13286.1

>prot_H-elongata_contig58111.13286.1 ID=prot_H-elongata_contig58111.13286.1|Name=mRNA_H-elongata_contig58111.13286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
EKWSVVVLNPFPLLPSPPGITRWALWYDNSKLKAATETWEENLKHIMAFD
TVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTL
KGEDMGQLDHWWLRGVLAAIGEILEDVRRCR*
back to top

mRNA from alignment at H-elongata_contig58111:641..1874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58111.13286.1 ID=mRNA_H-elongata_contig58111.13286.1|Name=mRNA_H-elongata_contig58111.13286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1234bp|location=Sequence derived from alignment at H-elongata_contig58111:641..1874- (Himanthalia elongata Himel1 dioecious)
GAAAAATGGTCTGTCGTTGTTCTCAATCCATTCCCTCTTCTTCCCTCCCC CCCTGGTATCACAAGGTGGGCGCTTTGGTACGACAATTCGAAGCTAAAGG CGGCGACAGAGACCTGGGAGGAGAACCTGAAGCACATCATGGCCTTTGAC ACTGTCGAGGACTTCTGGGCCCTCTTCAACAACGTCAAGCCGCCAAGCAT GCTCACGGTGCGTGTCCATCTCGGCGAGAATATTTGAGTCGTTGCCCTTA TGAAGTGGGTTTCCAGCGTCTGGTCCATGGCGGACATACGACCGTGCAGC AGCAGCAGCACTGTGGAATCTGTCGCAAGATACAATACTTAGCTACCCGC CCGGCCACCCTTTCACCAATATCTGTAATTTTACGTCTCTCCCGTGCCGA TGCCATCTCCGGCCCTCCGTAGATGAACAGTAACTACAGCGTGTTTAAGG AGGGCGTGAAGCCCATGTGGGAGGACAAGACCAACTGCCAGGTTCGGCCT TTACCGCGCTCTTTCTTTTTCTGTCTGTCAAAGTCAATTTTTTTTACTTA TATTATTTCGACCAATACGACTGATGACCTACTACTTTTATAGTTAAAAC TAATATCAATAACTTTTAAATAATAATAATAATAATAATAATCACTGTTA AAACGACTGTAGGGAGAATTGTCCCAACAACTTCAAGTAACGTTGAATGG TTAAAACTTGCAGACTCGACATTCGACATTAATAGACTTCATCAAATAAC TTTAAACCATAATGGCTTTATCTCGGTATCTTTTTCTAAGTCTACACATT ATTTTATGTCTCAGTATATATACATATATATATATATATATAGAGAGAGA GAGATAGATAATATGGTGTCGTCGTGGAGTCGAGCTTGTGATCCTTTTTT TGCCATTTTGAGTCCACACCTGATACTGACATTATCAGCGCACGGACGCC GCACGGGATTATTTTGGTTCGCCCCCTATATAGATAAGCGCGACCCGCCT TAGAATACTATACCCCGTTTATGCCGGCCGAACCTCGAGTTCCAGGATCT CTCCCCCCCCCCCCATCCTCGTCCTCTTTTTTTTGTCTGGTGGTGCCTCC CTGTGTCCTGAAAGGGGGGGAAGTCCGTGCTCACGCTGAAGGGCGAAGAC ATGGGGCAGCTCGACCACTGGTGGCTTCGCGGCGTGCTGGCCGCTATCGG GGAAATCCTAGAAGACGTGAGGCGATGTCGCTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig58111:641..1874-

>mRNA_H-elongata_contig58111.13286.1 ID=mRNA_H-elongata_contig58111.13286.1|Name=mRNA_H-elongata_contig58111.13286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig58111:641..1874- (Himanthalia elongata Himel1 dioecious)
GAAAAATGGTCTGTCGTTGTTCTCAATCCATTCCCTCTTCTTCCCTCCCC
CCCTGGTATCACAAGGTGGGCGCTTTGGTACGACAATTCGAAGCTAAAGG
CGGCGACAGAGACCTGGGAGGAGAACCTGAAGCACATCATGGCCTTTGAC
ACTGTCGAGGACTTCTGGGCCCTCTTCAACAACGTCAAGCCGCCAAGCAT
GCTCACGGAAAAATGGTCTGTCGTTGTTCTCAATCCATTCCCTCTTCTTC
CCTCCCCCCCTGGTATCACAAGGTGGGCGCTTTGGTACGACAATTCGAAG
CTAAAGGCGGCGACAGAGACCTGGGAGGAGAACCTGAAGCACATCATGGC
CTTTGACACTGTCGAGGACTTCTGGGCCCTCTTCAACAACGTCAAGCCGC
CAAGCATGCTCACGATGAACAGTAACTACAGCGTGTTTAAGGAGGGCGTG
AAGCCCATGTGGGAGGACAAGACCAACTGCCAGATGAACAGTAACTACAG
CGTGTTTAAGGAGGGCGTGAAGCCCATGTGGGAGGACAAGACCAACTGCC
AGGGGGGGAAGTCCGTGCTCACGCTGAAGGGCGAAGACATGGGGCAGCTC
GACCACTGGTGGCTTCGCGGCGTGCTGGCCGCTATCGGGGAAATCCTAGA
AGACGTGAGGCGATGTCGCTGAGGGGGGAAGTCCGTGCTCACGCTGAAGG
GCGAAGACATGGGGCAGCTCGACCACTGGTGGCTTCGCGGCGTGCTGGCC
GCTATCGGGGAAATCCTAGAAGACGTGAGGCGATGTCGCTGA
back to top