mRNA_H-elongata_contig57948.13267.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57948.13267.1
Unique NamemRNA_H-elongata_contig57948.13267.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Match: A0A6H5KFB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.510e-37
Identity = 58/72 (80.56%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 MLSFAKRMRENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEAGDPSRARECLPEKSKQFLVTRN 216
            MLS AKR+RE V PARRTSAFL++GVLTP EF+EAGEQLVFKCPTW+WEAGDPS+A++CLP+KS+QFLVTRN
Sbjct:    1 MLSLAKRIRETVTPARRTSAFLSQGVLTPEEFIEAGEQLVFKCPTWTWEAGDPSKAKDCLPDKSRQFLVTRN 72
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BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Match: D7FLZ2_ECTSI (Autophagy-related protein3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ2_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 3.200e-34
Identity = 57/72 (79.17%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 MLSFAKRMRENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEAGDPSRARECLPEKSKQFLVTRN 216
            MLS AKR+RE V PAR+TSAFL++GVLTP EF+EAGEQLVFKCPTW+WEAGDPS+A++CLP+KS+QFLVTRN
Sbjct:    1 MLSLAKRIRETVTPARKTSAFLSQGVLTPEEFIEAGEQLVFKCPTWTWEAGDPSKAKDCLPDKSRQFLVTRN 72
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BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Match: A0A835YXZ6_9STRA (Putative autophagocytosis associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ6_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.070e-24
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:    1 MLSFAKRMRENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEAGDPSRARECLPEKSKQFLVTRNGKSCRSVSS 243
            +LS+AK +RE + P R TSA+  KGVLTP EFV AG+QLVFKCPTWSWEAGDPS+A+  LP   KQ+L+T+     R V+S
Sbjct:    4 LLSYAKGIRERLAPVRVTSAYQEKGVLTPEEFVLAGDQLVFKCPTWSWEAGDPSKAKPYLPV-DKQYLITKGVPCLRRVAS 83
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BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Match: A0A7S4MX53_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MX53_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.970e-23
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 MLSFAKRMRENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEAGDPSRARECLPEKSKQFLVTRN 216
            M S+ K+ RE   P  + SAFLT+GVLTP EFV AG++LV+KCPTWSWE GDP R +  LP   KQ+LVTRN
Sbjct:    1 MTSYLKQAREWATPTLKKSAFLTRGVLTPEEFVRAGDELVYKCPTWSWEGGDPKRVKGHLPP-DKQYLVTRN 71
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BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Match: A0A7S0CIH4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIH4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.150e-23
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 MLSFAKRMRENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEAGDPSRARECLPEKSKQFLVTRN 216
            + S AK  RE   P  ++SAFLT+GVLTP EFV+AG++LVFKCPTWSWE GDP+RAR  LP + KQ+L+TRN
Sbjct:    4 LFSKAKEFREWAAPTLKSSAFLTRGVLTPEEFVKAGDELVFKCPTWSWEGGDPTRARPYLP-RDKQYLLTRN 74
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BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Match: A0A7S2UI62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI62_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 9.640e-23
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 MLSFAKRMRENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEAGDPSRARECLPEKSKQFLVTRN 216
            +L+  KR RE   P  ++SAFL++GVLTP EFV+AG++LV+KCPTWSWE GDP +A+  LP K KQ+LVTRN
Sbjct:    4 LLASMKRTREWATPTLKSSAFLSRGVLTPEEFVQAGDELVYKCPTWSWEGGDPVKAKSYLP-KDKQYLVTRN 74
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BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Match: A0A388L9E2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9E2_CHABU)

HSP 1 Score: 92.8 bits (229), Expect = 5.130e-22
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   28 ENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEAGDPSRARECLPEKSKQFLVTRNGK 222
            E++ PAR  SAF  KGVLTP EFV+AG+ LV KCPTWSWE GD SR +  LP   KQFLVTRNGK
Sbjct:   13 ESITPARSVSAFKEKGVLTPEEFVQAGDNLVAKCPTWSWEGGDTSRRKTYLPP-GKQFLVTRNGK 76
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BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Match: I2CS16_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS16_NANGC)

HSP 1 Score: 88.6 bits (218), Expect = 3.780e-21
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 MLSFAKRMRENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEAGDPSRARECLPEKSKQFLVTRN 216
            + SF K +RE   P    SAF+ +GVLTP EFV AG+QLV++CPTWSWE GDP++ +  LP   KQ+LVTRN
Sbjct:    5 LTSFLKGVREYAYPVLDKSAFMERGVLTPQEFVLAGDQLVYRCPTWSWEGGDPTKRKPYLPV-DKQYLVTRN 75
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BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Match: A0A7S0FKA6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FKA6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.110e-21
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 MLSFAKRMRENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEAGDPSRARECLPEKSKQFLVTRN 216
            M S+ K +RE   P  ++SAFL++GVLTP EFV AG++LV+KCPTWSWE GDP +A+  LP   KQ+L+TRN
Sbjct:    1 MSSYLKSVREWATPTLKSSAFLSRGVLTPEEFVAAGDELVYKCPTWSWEGGDPKKAKSYLP-LDKQYLITRN 71
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BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Match: A0A6V2J7X3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2J7X3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.940e-21
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:   16 KRMRENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEAGDPSRARECLPEKSKQFLVTRNGKSCRSVSS 243
            ++ RE   P  ++SAFL++GVLTP EFV AG++LV+KCPTWSWE GDPS+A+  LP K KQ+L+TRN      VSS
Sbjct:    9 RQAREWAYPTLKSSAFLSRGVLTPDEFVIAGDELVYKCPTWSWEGGDPSKAKSYLP-KDKQYLITRNVPCPTRVSS 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57948.13267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFB3_9PHAE4.510e-3780.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLZ2_ECTSI3.200e-3479.17Autophagy-related protein3 n=1 Tax=Ectocarpus sili... [more]
A0A835YXZ6_9STRA4.070e-2460.49Putative autophagocytosis associated protein n=1 T... [more]
A0A7S4MX53_9STRA2.970e-2361.11Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S0CIH4_9STRA3.150e-2363.89Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2UI62_9STRA9.640e-2361.11Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A388L9E2_CHABU5.130e-2267.69Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
I2CS16_NANGC3.780e-2156.94Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S0FKA6_9STRA4.110e-2158.33Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6V2J7X3_9STRA6.940e-2157.89Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57948contigH-elongata_contig57948:1811..2688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.7e-28
Seed eggNOG ortholog2880.D7FLZ2
Preferred nameATG3
KEGG koko:K08343
KEGG Pathwayko04136,ko04138,ko04140,ko05167,map04136,map04138,map04140,map05167
GOsGO:0000045,GO:0000151,GO:0000153,GO:0000272,GO:0000422,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0006915,GO:0006950,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0012501,GO:0015031,GO:0015833,GO:0015980,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0016567,GO:0016740,GO:0018410,GO:0019538,GO:0019776,GO:0019777,GO:0019787,GO:0019899,GO:0022411,GO:0022607,GO:0030100,GO:0031344,GO:0031667,GO:0031668,GO:0031669,GO:0032258,GO:0032446,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034613,GO:0034645,GO:0034727,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043653,GO:0043687,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0045806,GO:0046907,GO:0048519,GO:0048523,GO:0050764,GO:0050765,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055114,GO:0060491,GO:0060627,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0070647,GO:0070727,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0072665,GO:0090150,GO:0120032,GO:0120035,GO:0140096,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902017,GO:1902115,GO:1902494,GO:1903008,GO:1905037,GO:1990234
EggNOG free text desc.Atg8 ligase activity
EggNOG OGsKOG2981@1,KOG2981@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04131
Hectar predicted targeting categorymitochondrion
Exons2
Model size264
Cds size264
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.145053-CDS-H-elongata_contig57948:1810..19531622930940.145053-CDS-H-elongata_contig57948:1810..1953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57948 1811..1953 +
1691679633.2670026-CDS-H-elongata_contig57948:1810..19531691679633.2670026-CDS-H-elongata_contig57948:1810..1953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57948 1811..1953 +
1622930940.1628108-CDS-H-elongata_contig57948:2567..26881622930940.1628108-CDS-H-elongata_contig57948:2567..2688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57948 2568..2688 +
1691679633.2777793-CDS-H-elongata_contig57948:2567..26881691679633.2777793-CDS-H-elongata_contig57948:2567..2688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57948 2568..2688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57948.13267.1prot_H-elongata_contig57948.13267.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57948 1811..2688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57948.13267.1

>prot_H-elongata_contig57948.13267.1 ID=prot_H-elongata_contig57948.13267.1|Name=mRNA_H-elongata_contig57948.13267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MLSFAKRMRENVVPARRTSAFLTKGVLTPAEFVEAGEQLVFKCPTWSWEA
GDPSRARECLPEKSKQFLVTRNGKSCRSVSSQHPHLV*
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mRNA from alignment at H-elongata_contig57948:1811..2688+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57948.13267.1 ID=mRNA_H-elongata_contig57948.13267.1|Name=mRNA_H-elongata_contig57948.13267.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=878bp|location=Sequence derived from alignment at H-elongata_contig57948:1811..2688+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTCTTTTGCGAAGAGGATGCGAGAGAACGTGGTGCCCGCGAGGAG
GACGTCGGCGTTCCTCACCAAGGGCGTGCTTACTCCGGCAGAGTTCGTCG
AGGCGGGGGAGCAACTGGTGTTCAAATGTCCCACGTGGAGCTGGTGAGCA
CGAGACAAATCGAGCCCCGTCAACCTGCAGAGCTGTAGGATGAATCTATA
ATATACTATATATATGAAAAGTATATCTCCTATTTTGAGTAGAGGGAGTT
CGCAGATAGACGCTGAATCGAACTTAACCTGTTGCTGTTTGGAGTTATGA
ATCCATCACCTCTGTATGGTGGTATCGTTATCGTGTCCAACAGTTAGTAA
ATCAAGGCGTTGAGTTTGACATTGCTGAAGCTTGTGATGACAGCTGAGCA
TCGTAGGGGACATGACCTATTGCATACACACCCGGGGAGATGACCTATTG
CACTCACACATCCCGGTTCTTTCCACATCGTCGAATGCACAATCCCAGCT
GCAATAAACGCTGCGTGTTCGATAGCCTCTTGCAACAAGCTTTCCAAAAA
CCTAGCTTGCGACATCTTCGCTCCCGGTATCGTAAAAAAAAAAGGAACGG
GGGATTCCCATCCCCGGGGTTTGTATTATACTAATAAACTAACAGAACAC
GTCACCTACGGTACAACGGATTCTGGTATCTCGTGTAACATGCCCCGCCC
CGCCCCAGCGGACTGAAGGGACGAATCTCCGTGGTTTTGCGCGGCGTGTT
CGAGCAGGGAGGCTGGAGACCCCTCGCGGGCGAGGGAGTGCCTCCCCGAG
AAGAGCAAACAGTTTCTGGTTACAAGGAATGGTAAGAGTTGTCGAAGCGT
TTCTTCCCAGCACCCGCACCTTGTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig57948:1811..2688+

>mRNA_H-elongata_contig57948.13267.1 ID=mRNA_H-elongata_contig57948.13267.1|Name=mRNA_H-elongata_contig57948.13267.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig57948:1811..2688+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTCTTTTGCGAAGAGGATGCGAGAGAACGTGGTGCCCGCGAGGAG
GACGTCGGCGTTCCTCACCAAGGGCGTGCTTACTCCGGCAGAGTTCGTCG
AGGCGGGGGAGCAACTGGTGTTCAAATGTCCCACGTGGAGCTGATGTTGT
CTTTTGCGAAGAGGATGCGAGAGAACGTGGTGCCCGCGAGGAGGACGTCG
GCGTTCCTCACCAAGGGCGTGCTTACTCCGGCAGAGTTCGTCGAGGCGGG
GGAGCAACTGGTGTTCAAATGTCCCACGTGGAGCTGGGAGGCTGGAGACC
CCTCGCGGGCGAGGGAGTGCCTCCCCGAGAAGAGCAAACAGTTTCTGGTT
ACAAGGAATGGTAAGAGTTGTCGAAGCGTTTCTTCCCAGCACCCGCACCT
TGTATAGGGAGGCTGGAGACCCCTCGCGGGCGAGGGAGTGCCTCCCCGAG
AAGAGCAAACAGTTTCTGGTTACAAGGAATGGTAAGAGTTGTCGAAGCGT
TTCTTCCCAGCACCCGCACCTTGTATAG
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