mRNA_H-elongata_contig57281.13193.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57281.13193.1
Unique NamemRNA_H-elongata_contig57281.13193.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57281.13193.1 vs. uniprot
Match: A0A6H5KX58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX58_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.170e-45
Identity = 80/119 (67.23%), Postives = 99/119 (83.19%), Query Frame = 1 
Query:    1 VCIQRNLNGSCKQSGIGGREAAEEIVGVSKEAPAQEA-ENELIVKLRKRTLENKARNDEEIATKTFANGQSGEFGPFSRYVPVKHQDTGKFELVLVRELDDMKKAGLIVKERGQDVFVD 354
            VC+QR LNG+C + G+   +  EE+  +S +APAQE  E+EL+  L++RT+ENKA+NDEEIATKTFANGQSGEFGPFSRYVPVKH+DTGKFELVL+ EL++MK+ GLIV ER  DVFVD
Sbjct:   87 VCLQRGLNGACVKFGVD--DTMEEVASISTKAPAQEEPESELMATLKRRTIENKAKNDEEIATKTFANGQSGEFGPFSRYVPVKHKDTGKFELVLISELEEMKRNGLIVSERLGDVFVD 203
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BLAST of mRNA_H-elongata_contig57281.13193.1 vs. uniprot
Match: A0A836CIW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.900e-21
Identity = 55/136 (40.44%), Postives = 86/136 (63.24%), Query Frame = 1 
Query:    1 VCIQRN-LNGSCKQSGIGGREAAEEIVGVSKEAPA--------------QEAENELIVKLRKRTLENKARNDEEIATKTFANGQSGEFGPFSRYVPVKHQDTGKFELVLVRELDDMKKAGLIVKERGQDVFVDTQE 363
            +C++R+ +NG C++        ++E+V +   A +              +E E++LI +LR++T+ENKA+N+  +A KTF N Q+GEFGPFSRYV VK  + GK+ELVL+R+LDD+K+ G+I  E     FV  +E
Sbjct:   84 ICVKRSAINGRCEKY-------SDEVVPLDASASSNRTKVDRVKRTVVQEEPESDLIKRLRQKTVENKAKNEAMVAEKTFMNNQAGEFGPFSRYVLVKRPNDGKYELVLIRDLDDLKRQGII--ESSGKAFVPGKE 210
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BLAST of mRNA_H-elongata_contig57281.13193.1 vs. uniprot
Match: A0A7S2Y4S0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4S0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.010e-13
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 1 
Query:    1 VCIQRNLNGSC-----------KQSGIGG--REAAEEIVGVSKEAPAQEAENELIVKLRKRTLENKARNDEEIATKTFANGQSGEFGPFSRYVPVKHQDTGKFELVLVRELDDMKKAGLI 321
            +C++RN+ G C           KQ+ +    ++  +E    SK+   +EA+ +LI +L K++ ENK  ND  +A KTF   + G+FGPFSRYVPV+H D G +EL+   E   +KK G +
Sbjct:   85 ICLKRNVIGRCDRWVGDDLPEEKQNSVKDSMKKRTQENEAKSKQLAEKEAKGDLIEELLKKSAENKVENDRLVAEKTFLASEPGQFGPFSRYVPVRHFD-GTYELLTYPEYRKLKKQGKV 203
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BLAST of mRNA_H-elongata_contig57281.13193.1 vs. uniprot
Match: A0A7S3JN45_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN45_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.620e-12
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 1 
Query:    1 VCIQRNLNGSCKQSGIGGREAAEEIVGVSKEAPA-----QEAENELIVKLRKRTLENKARNDEEIATKTFANGQSGEFGPFSRYVPVKHQDTGKFELVLVRELDDMKKAGLIVKERGQDVFVDTQETK 369
            VC +R + G C +        A    G  K + A     +E+ +ELI +LRK++ EN+ RND +I  ++FAN QSG FGPFSRY PV   D G F LVL R+ + +KK   IV       FVD  + K
Sbjct:   66 VCGRRGILGKCIEDATESDTIAPSS-GSGKASGARLLEREESSSELIDRLRKQSEENRVRNDRKIELESFANSQSGLFGPFSRYEPVMKTD-GSFVLVLARDFERLKKEKRIV----DGCFVDDADAK 187
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BLAST of mRNA_H-elongata_contig57281.13193.1 vs. uniprot
Match: A0A7S4A8G9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8G9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.140e-12
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:  103 QEAENELIVKLRKRTLENKARNDEEIATKTFANGQSGEFGPFSRYVPVKHQDTGKFELVLVRELDDMKKAGLIVKERGQD 342
            QE E+ L+ +LR+RT  N  +N  ++  + F N QSGEFGPFSR+VPV   D GK+ LVL  E +D+KK   + K++  D
Sbjct:   60 QELESPLVAELRRRTAANAEKNARQVELQMFQNSQSGEFGPFSRFVPVAKND-GKYVLVLAGEYEDLKKQKKVAKQKFLD 138
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BLAST of mRNA_H-elongata_contig57281.13193.1 vs. uniprot
Match: W7TJZ7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJZ7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.510e-7
Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:  118 ELIVKLRKRTLENKARNDEEIATKTFANGQSGEFGPFSRYVPVKHQDTGKFELVLVRELDDMKKAGLIVKERGQDVFVDTQ 360
            +L+  L++RT++NKA+ND  +  KTF N ++G +GPF +++PV  +D G++ L+   + + +K  G IV   G+D  VD Q
Sbjct:  101 DLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKD-GQYVLLTEDQYNTLKGEGKIV---GRDFVVDYQ 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57281.13193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KX58_9PHAE2.170e-4567.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CIW7_9STRA4.900e-2140.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2Y4S0_9STRA3.010e-1337.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3JN45_9STRA1.620e-1240.63Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4A8G9_9STRA2.140e-1246.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7TJZ7_9STRA1.510e-738.27Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57281contigH-elongata_contig57281:581..2206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_007380.1
Hectar predicted targeting categoryother localisation
Exons4
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57281.13193.1prot_H-elongata_contig57281.13193.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57281 581..2206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.14271-CDS-H-elongata_contig57281:580..6521622930931.14271-CDS-H-elongata_contig57281:580..652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57281 581..652 +
1691679629.6526113-CDS-H-elongata_contig57281:580..6521691679629.6526113-CDS-H-elongata_contig57281:580..652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57281 581..652 +
1622930931.1602018-CDS-H-elongata_contig57281:1006..10771622930931.1602018-CDS-H-elongata_contig57281:1006..1077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57281 1007..1077 +
1691679629.663954-CDS-H-elongata_contig57281:1006..10771691679629.663954-CDS-H-elongata_contig57281:1006..1077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57281 1007..1077 +
1622930931.1909251-CDS-H-elongata_contig57281:1335..14251622930931.1909251-CDS-H-elongata_contig57281:1335..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57281 1336..1425 +
1691679629.6730583-CDS-H-elongata_contig57281:1335..14251691679629.6730583-CDS-H-elongata_contig57281:1335..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57281 1336..1425 +
1622930931.2154255-CDS-H-elongata_contig57281:2067..22061622930931.2154255-CDS-H-elongata_contig57281:2067..2206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57281 2068..2206 +
1691679629.6822188-CDS-H-elongata_contig57281:2067..22061691679629.6822188-CDS-H-elongata_contig57281:2067..2206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57281 2068..2206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57281.13193.1

>prot_H-elongata_contig57281.13193.1 ID=prot_H-elongata_contig57281.13193.1|Name=mRNA_H-elongata_contig57281.13193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
VCIQRNLNGSCKQSGIGGREAAEEIVGVSKEAPAQEAENELIVKLRKRTL
ENKARNDEEIATKTFANGQSGEFGPFSRYVPVKHQDTGKFELVLVRELDD
MKKAGLIVKERGQDVFVDTQETK*
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mRNA from alignment at H-elongata_contig57281:581..2206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57281.13193.1 ID=mRNA_H-elongata_contig57281.13193.1|Name=mRNA_H-elongata_contig57281.13193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1626bp|location=Sequence derived from alignment at H-elongata_contig57281:581..2206+ (Himanthalia elongata Himel1 dioecious)
GTCTGTATCCAGAGAAATCTGAATGGTTCTTGTAAACAATCTGGCATCGG
TGGCCGCGAAGCCGCTGAGGAGGTACGGGGTGCGCATCTTTAGCTTGAGC
CCACAACTTGAATCGACTGGTGCCGAATAACGGGTCACGGTGTTAGAAGA
TTTAATACAACCTTGGCTTGCGAAGTTTTTGCCCTGTGGGATCGTTGAAA
AACCTTCTACTGAAACATTAATCACTCGTGTTAGGCCGATGTATCGAAGA
GCTCCTGCAAGTCAAATATCTCGACCGGACAACGCCGAACAACAAGTAAA
AGTCCCCTTGCGTAGCTTCGGTGTGCTCTCAGATGTCCACCGGGCGAACC
TGGTGAACGTCCCCCCCCAGCAATACACCGGTCGGGATGATTTCGCGCTT
TGTGATCCTACCGGCATCACGTGCAGATCGTTGGTGTTTCAAAGGAGGCA
CCTGCTCAAGAAGCCGAAAACGAGCTCATCGTTAAACTCAGAAAAAGGTG
ACGCCTACTTCGTCGTTCCCCCCTTCGCACGGGTCCCGCCGTATCGCGCC
GCGCTTCTCACAACAGGGGTAGGAGCTCGGAGTATTGTGGACTGCCTGCC
ACGAAGTACGTAGGATTGCTGTTGGTATGTCCGCGAATGCTCGAGTGGTG
AGGTAGACCGCTTGAATCGAAAGCGAAAGAGGCTCCTGTCTTCTTCCCCC
TGCTCCGCCGTCCCCCACCGACCGCTTTCCCGCGGCTCGCCCGATTGAAA
CTCAGAACTCTGGAGAACAAGGCTAGAAACGACGAAGAGATTGCGACGAA
AACGTTCGCGAATGGACAATCGGGAGAGTTTGGCCCTTTCAGCAGGTGAC
GGTCGCTCAAGTCAAGTCCTTTATTTATAGTACGCCATGAATATATATAT
GCCTAGGAGCGTCTGCTTAATCTTCTACGGAGGCGCGAGCGCACTCATTG
CTGACCTTATGACAAATAATGGCACCACAAAAACGCTCGTGGATGTGTCT
AAGGCGTTGCTTAATACCTTGACTGCCTTGATCATGGTCATGGCGTGCGG
CTATACTCGGCAAGATAAGGACAGGGCATGCCTGGTAGTTTTTGTAGTGA
TATTTTGCATACTTGGTAGATGGAATTTTTGTAGTGATATCCGGCATTTT
CGTTGTTGTTGTGTAATCGTACCAAGCAGTGTCATCATTTTCGGCGGTAA
TTTAAATCGTGTTCCCGGCGTTTTTCATCGTCGTATCCAGAACAATACTG
TTTGGACAGCCCTTTCAGTCCTTTAAATGTCATATAGAGAGCCTTGTTTC
TCTTCGAAGAACACCAGACACCACGCTCTTTGTTTTATGCCTAGGCATAA
TCCAAGAAACCATCGCCTCCCCCAATCTCTGTCGCCCTTGTATCCTCCCG
CTTACCGGCATGTTTTAAATGGCTGGTGAACCTATTGTGTTCATTTCAAA
TTTCACGGTCAACTCTGCAACGATTACGTCCCGACAGGTATGTCCCTGTC
AAGCATCAGGACACGGGCAAATTCGAACTCGTGCTCGTCCGCGAGCTCGA
CGATATGAAAAAAGCAGGGCTGATCGTCAAGGAGCGCGGTCAGGACGTCT
TCGTGGACACTCAGGAAACCAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig57281:581..2206+

>mRNA_H-elongata_contig57281.13193.1 ID=mRNA_H-elongata_contig57281.13193.1|Name=mRNA_H-elongata_contig57281.13193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig57281:581..2206+ (Himanthalia elongata Himel1 dioecious)
GTCTGTATCCAGAGAAATCTGAATGGTTCTTGTAAACAATCTGGCATCGG
TGGCCGCGAAGCCGCTGAGGAGGTCTGTATCCAGAGAAATCTGAATGGTT
CTTGTAAACAATCTGGCATCGGTGGCCGCGAAGCCGCTGAGGAGATCGTT
GGTGTTTCAAAGGAGGCACCTGCTCAAGAAGCCGAAAACGAGCTCATCGT
TAAACTCAGAAAAAGATCGTTGGTGTTTCAAAGGAGGCACCTGCTCAAGA
AGCCGAAAACGAGCTCATCGTTAAACTCAGAAAAAGAACTCTGGAGAACA
AGGCTAGAAACGACGAAGAGATTGCGACGAAAACGTTCGCGAATGGACAA
TCGGGAGAGTTTGGCCCTTTCAGCAGAACTCTGGAGAACAAGGCTAGAAA
CGACGAAGAGATTGCGACGAAAACGTTCGCGAATGGACAATCGGGAGAGT
TTGGCCCTTTCAGCAGGTATGTCCCTGTCAAGCATCAGGACACGGGCAAA
TTCGAACTCGTGCTCGTCCGCGAGCTCGACGATATGAAAAAAGCAGGGCT
GATCGTCAAGGAGCGCGGTCAGGACGTCTTCGTGGACACTCAGGAAACCA
AATAAGTATGTCCCTGTCAAGCATCAGGACACGGGCAAATTCGAACTCGT
GCTCGTCCGCGAGCTCGACGATATGAAAAAAGCAGGGCTGATCGTCAAGG
AGCGCGGTCAGGACGTCTTCGTGGACACTCAGGAAACCAAATAA
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