mRNA_H-elongata_contig57232.13186.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57232.13186.1
Unique NamemRNA_H-elongata_contig57232.13186.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 4.970e-69
Identity = 119/186 (63.98%), Postives = 144/186 (77.42%), Query Frame = 2
Query:   68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
            PG   +  DPQI IIF PPNV  V+ P D GIL ALK QYK EM+ARL++LI  WD V AR IRRG +GLNDA QATMLDV EILS+K E+F  Q+VIRCWLK +ILPRE  NALK KD  LDREDKEDTAII+++C++V+KM++PAS  D+RS  RVLTD LF EK  GLTDA++R+A++T+  V
Sbjct:  251 PGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIIDDLCEMVSKMSMPASATDSRSTARVLTDNLFVEKASGLTDAEVRQAVKTWLSV 436          
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 6.860e-68
Identity = 119/186 (63.98%), Postives = 144/186 (77.42%), Query Frame = 2
Query:   68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
            PG   +  DPQI IIF PPNV  V+ P D GIL ALK QYK EM+ARL++LI  WD V AR IRRG +GLNDA QATMLDV EILS+K E+F  Q+VIRCWLK +ILPRE  NALK KD  LDREDKEDTAII+++C++V+KM++PAS  D+RS  RVLTD LF EK  GLTDA++R+A++T+  V
Sbjct:  456 PGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIIDDLCEMVSKMSMPASATDSRSTARVLTDNLFVEKASGLTDAEVRQAVKTWLSV 641          
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 3.310e-63
Identity = 112/186 (60.22%), Postives = 135/186 (72.58%), Query Frame = 2
Query:   68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
            PG   +  DPQI IIF PPNV  VY P + GIL  LK QYK EM+ARL++LI+DWDTV AR I+RG +GL+DA QATMLDV EI SQK  +F  Q+VIRCWLK  ILPRE    LK  D  LDREDK+D AII+ +CD+  KM++PASV D RSMPRVLTD LF EK   LT+ ++R A++T+  V
Sbjct:  288 PGHKIKSNDPQIVIIFLPPNVNSVYQPMNMGILFVLKCQYKTEMVARLADLIEDWDTVRARKIQRGCRGLSDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCKVLKGMDTRLDREDKDDAAIIDGLCDMATKMSMPASVTDCRSMPRVLTDNLFVEKGTDLTEQEVRTAVKTWLTV 473          
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 2.840e-62
Identity = 108/186 (58.06%), Postives = 132/186 (70.97%), Query Frame = 2
Query:   68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
            PG   +  DPQI IIF PP +  VY P D GIL  LK +YK EM+ARL++LI+DWDTV AR  +RG QGL+DA QATMLDV EI SQK  +F  Q+VI CWLK  ILPRE  N LK  D  +DREDK+D AII+ +CD+V+KM +PASV   RSMPRVLTD L  EK   LT+ ++R A++T+  V
Sbjct:   85 PGHKIKSNDPQIVIIFLPPEITSVYQPMDMGILFVLKCRYKTEMVARLADLIEDWDTVRARKFQRGCQGLSDAGQATMLDVTEIGSQKWRSFDVQTVITCWLKAGILPREHCNVLKGMDTRVDREDKDDAAIIDGLCDMVSKMAMPASVTGYRSMPRVLTDNLLVEKGTDLTEQEVRTAVKTWLTV 270          
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JLK3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK3_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.680e-51
Identity = 106/191 (55.50%), Postives = 129/191 (67.54%), Query Frame = 2
Query:   68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASV--MDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLVLSK 634
            PG   +  DPQI IIF PPNV  V+ P D GIL ALK QYK EM+ RL+ LI+DWDT  AR IR G +GLNDA Q TMLDV E+LSQK E+F DQ+VIRCWLK  I P E  +ALK+ D  LDRED   TA+ +++CD+V KM++P S   +DARS PRVLTD +      GL DA     ++  T VLS+
Sbjct:  174 PGHRIKNDDPQIVIIFLPPNVMSVFQPMDMGILFALKCQYKTEMVMRLAALIEDWDTARARQIRTGCRGLNDAGQPTMLDVTEVLSQKWESFSDQTVIRCWLKATIRPGEHESALKDNDTRLDREDPGATAL-DDLCDMVEKMSMPESAKDLDARSKPRVLTDNMGCR---GLNDAGQPTMLDV-TEVLSQ 359          
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5KXD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD1_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 5.000e-51
Identity = 92/158 (58.23%), Postives = 116/158 (73.42%), Query Frame = 2
Query:  152 DQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
            D GIL  L  QYK EM+ RL++LI+DWDTV AR I+   +GLNDA QATMLDV EI SQK  +F  Q+VIRCWLK  ILPRE  N LK  D  LDREDK++ AI++ +CD+V+KM++PASV D+RSM R LTD LF EK   LT+ ++R A++T+  V
Sbjct:    2 DMGILFVLMCQYKTEMVERLADLIEDWDTVRARKIQGECRGLNDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCNVLKCMDTRLDREDKDNVAIVDGLCDMVSKMSMPASVTDSRSMLRGLTDDLFVEKGTDLTEQEVRTAVKTWLTV 159          
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JSR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR4_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 9.420e-50
Identity = 96/158 (60.76%), Postives = 117/158 (74.05%), Query Frame = 2
Query:  152 DQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
            D  IL  LK QYK EM+ARL++L++DWDTV AR I+RG  GL+DA QATMLDV EI SQK  +F  Q+ IRCWLK  ILPRE  N LK  D  LDREDK+D AII+ +CD+V+ M++PASVMD RSMPRVLTD LF EK   LT+  +R A++T+  V
Sbjct:    2 DMAILFVLKCQYKTEMLARLADLVEDWDTVRARKIQRGCWGLSDARQATMLDVTEIYSQKWRSFDVQTGIRCWLKAGILPREHCNVLKGMDTWLDREDKDDAAIIDGLCDMVSNMSMPASVMDYRSMPRVLTDNLFVEKGTDLTEQVVRTAVKTWLTV 159          
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5KSV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV5_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.220e-47
Identity = 90/158 (56.96%), Postives = 112/158 (70.89%), Query Frame = 2
Query:  158 GILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASV--MDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
            GIL ALK QYK EM+ RL+ LI+DWDT  A  IRRGY+GLNDA Q TMLDV EI SQK E+  DQ+VIRCWLK  ILP E  +ALK+KD  LD+ED    A ++++CD+V KM++  S   +DARS PRVLT+ LF E   GLT  ++R A+ T+  V
Sbjct:    4 GILFALKCQYKTEMVMRLAALIEDWDTARALKIRRGYRGLNDAGQPTMLDVTEIPSQKWESVSDQTVIRCWLKATILPGEHESALKDKDTRLDQEDP-GAASLDDLCDMVEKMSMAESAKDLDARSQPRVLTENLFVESASGLTGEEVRSAMRTWLSV 160          
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 4.690e-47
Identity = 90/151 (59.60%), Postives = 107/151 (70.86%), Query Frame = 2
Query:   68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMD 520
            PG      DPQI I+F PPNV  VY P D GIL  LK QY+ E MARL++LI+DWDTV AR I+RG QG +DA QAT+LDV EI SQK  +F  Q+VIRCWLK  ILP E  N  K  D  LDREDK D AII+ +CD+V+KM++PAS+ D
Sbjct:  424 PGHKINSNDPQIFIMFLPPNVISVYQPMDMGILFVLKCQYRNEKMARLADLIEDWDTVRARKIQRGCQGFSDAGQATVLDVTEICSQKWRSFDVQTVIRCWLKAGILPTEHCNVPKGMDTRLDREDKGDVAIIDGLCDMVSKMSMPASITD 574          
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5K0Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y4_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.440e-46
Identity = 96/186 (51.61%), Postives = 118/186 (63.44%), Query Frame = 2
Query:   68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
            PG   +  DP I I F PP V  VY P D  IL  LK QYK EM+ARL++L++DWDT                  ATMLDV EI SQK  +F  Q+VIRCWLK  ILPRE  N LK  D  LDREDK++ AII+ +CD+V+KM++PASV D  SMPRVLTD LF E    LT+ ++R A++T+  V
Sbjct:  365 PGHKIKSNDPHIVINFLPPYVNSVYQPMDMSILFVLKCQYKTEMVARLADLMEDWDT------------------ATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCNVLKGMDTRLDREDKDNAAIIDGLCDMVSKMSMPASVTDHGSMPRVLTDNLFVETGADLTEQEVRTAVKTWLSV 532          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEY2_9PHAE4.970e-6963.98HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JV64_9PHAE6.860e-6863.98HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JNS8_9PHAE3.310e-6360.22HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KIE7_9PHAE2.840e-6258.06DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JLK3_9PHAE1.680e-5155.50HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KXD1_9PHAE5.000e-5158.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSR4_9PHAE9.420e-5060.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSV5_9PHAE2.220e-4756.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEK6_9PHAE4.690e-4759.60DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K0Y4_9PHAE1.440e-4651.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57232contigH-elongata_contig57232:1515..2806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size864
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57232.13186.1prot_H-elongata_contig57232.13186.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57232 1711..2741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930930.4349382-UTR-H-elongata_contig57232:1514..17101622930930.4349382-UTR-H-elongata_contig57232:1514..1710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57232 1515..1710 +
1691679629.3103328-UTR-H-elongata_contig57232:1514..17101691679629.3103328-UTR-H-elongata_contig57232:1514..1710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57232 1515..1710 +
1622930930.5013082-UTR-H-elongata_contig57232:2741..28061622930930.5013082-UTR-H-elongata_contig57232:2741..2806Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57232 2742..2806 +
1691679629.3677156-UTR-H-elongata_contig57232:2741..28061691679629.3677156-UTR-H-elongata_contig57232:2741..2806Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57232 2742..2806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930930.4484727-CDS-H-elongata_contig57232:1710..17751622930930.4484727-CDS-H-elongata_contig57232:1710..1775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57232 1711..1775 +
1691679629.3288028-CDS-H-elongata_contig57232:1710..17751691679629.3288028-CDS-H-elongata_contig57232:1710..1775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57232 1711..1775 +
1622930930.4638438-CDS-H-elongata_contig57232:2028..23791622930930.4638438-CDS-H-elongata_contig57232:2028..2379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57232 2029..2379 +
1691679629.343062-CDS-H-elongata_contig57232:2028..23791691679629.343062-CDS-H-elongata_contig57232:2028..2379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57232 2029..2379 +
1622930930.4835408-CDS-H-elongata_contig57232:2554..27411622930930.4835408-CDS-H-elongata_contig57232:2554..2741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57232 2555..2741 +
1691679629.35305-CDS-H-elongata_contig57232:2554..27411691679629.35305-CDS-H-elongata_contig57232:2554..2741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57232 2555..2741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57232.13186.1

>prot_H-elongata_contig57232.13186.1 ID=prot_H-elongata_contig57232.13186.1|Name=mRNA_H-elongata_contig57232.13186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
MMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFP
DQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKM
TIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLVLSKFAPI
CTRNQEMIKTAKHSTLFRKLCIRSLMKLKSSVEGKSWGRCRQLLTLTFAI
*
back to top

mRNA from alignment at H-elongata_contig57232:1515..2806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57232.13186.1 ID=mRNA_H-elongata_contig57232.13186.1|Name=mRNA_H-elongata_contig57232.13186.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1292bp|location=Sequence derived from alignment at H-elongata_contig57232:1515..2806+ (Himanthalia elongata Himel1 dioecious)
ATGAGGCCTTCGTCCCCTTGGTCAAAAGAGCAACCAGGAGGAAGGTTGCC CTCGTGTCGGATATTTGCCTGGGCCACATCATCAGAAACAAGACCCGCAA ATCACCATAATATTTTCCCCTCCTAACGTCCCGTTCGTCTACCATCCCTG CGATCAGGGAATCCTGCATGCCCTCAAGGGCCAGTACAAGGCCGAGATGA TGGCGAGATTGTCGGAACTAATCAAGGATTGGGATACTGTCCTGGCGCGC AACATCCGCAGGTACAAAGACATACCACCCGTTCTTGAGAGGTAAATTGT GGGGTTTTCCCGTTTTGGGAGAGATGGGTTGTGGCAACGGCCTTGAGAAT ACTTCGCTTTCAAACATAAGTCACTAGAGGTACACTTAAGGGCGCGTGCG TTTGAGGAGTTGCTGCCTGAAAATACAACACCAATGTTTGTCAACCATGT GCAGTTAAATCCACCTGTTGCGTAATTCTGCCCTGCTTTCCTTTACATGG TGACGTTTATGCAGGGGATACCAGGGTCTGAACGACGCAGACCAGGCGAC AATGTTGGACGTTGCTGAGATCCTTTCACAGAAGGGGGAGAACTTCCCGG ACCAGTCCGTCATCAGGTGTTGGCTCAAGGACGACATCCTTCCCAGGGAG GACGTAAACGCCCTAAAGAACAAGGATCCGCCACTAGATCGAGAGGACAA GGAGGACACGGCCATCATCGAAAACATTTGCGACATAGTCGCGAAGATGA CGATTCCAGCCAGTGTCATGGACGCTAGATCCATGCCACGAGTGTTGACG GACATTTTGTTCGCCGAGAAACAGCCAGGTCTCACTGATGCCCAAATGCG TGAGGCAATAGAGACGCAGCTTAATGTAACGGACGACCTCCAAGTGTTGG ACGACGAGGTCAAATTGGAACTGCACGCTGTAGATGAGGACCTCGCCAAC TTAGATGTCGAAGATCATGTGTCGGGTAAAGAAGAAGACCGCAGCGGTAG GCCAGAGTCATGCATTACATCGTCGATCCCATAGGCTGAGATTCACTCTC GTTTTGAGTAAGTTCGCTCCTATTTGTACACGAAATCAAGAGATGATAAA AACAGCGAAACACAGTACCTTATTTCGAAAGCTGTGCATTCGTTCACTCA TGAAACTCAAGTCGAGCGTAGAGGGAAAGAGCTGGGGAAGATGCAGGCAA CTATTAACATTAACATTCGCGATTTAGGGAACAAGGGGGAATGCATTTTT TTTTGTGTGTACACGCACTGCTGCTGCTGTTGTATATACATA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig57232:1515..2806+

>mRNA_H-elongata_contig57232.13186.1 ID=mRNA_H-elongata_contig57232.13186.1|Name=mRNA_H-elongata_contig57232.13186.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig57232:1515..2806+ (Himanthalia elongata Himel1 dioecious)
ATGATGGCGAGATTGTCGGAACTAATCAAGGATTGGGATACTGTCCTGGC
GCGCAACATCCGCAGATGATGGCGAGATTGTCGGAACTAATCAAGGATTG
GGATACTGTCCTGGCGCGCAACATCCGCAGGGGATACCAGGGTCTGAACG
ACGCAGACCAGGCGACAATGTTGGACGTTGCTGAGATCCTTTCACAGAAG
GGGGAGAACTTCCCGGACCAGTCCGTCATCAGGTGTTGGCTCAAGGACGA
CATCCTTCCCAGGGAGGACGTAAACGCCCTAAAGAACAAGGATCCGCCAC
TAGATCGAGAGGACAAGGAGGACACGGCCATCATCGAAAACATTTGCGAC
ATAGTCGCGAAGATGACGATTCCAGCCAGTGTCATGGACGCTAGATCCAT
GCCACGAGTGTTGACGGACATTTTGTTCGCCGAGAAACAGCCAGGTCTCA
CTGATGCCCAAATGCGTGAGGCAATAGAGACGGGATACCAGGGTCTGAAC
GACGCAGACCAGGCGACAATGTTGGACGTTGCTGAGATCCTTTCACAGAA
GGGGGAGAACTTCCCGGACCAGTCCGTCATCAGGTGTTGGCTCAAGGACG
ACATCCTTCCCAGGGAGGACGTAAACGCCCTAAAGAACAAGGATCCGCCA
CTAGATCGAGAGGACAAGGAGGACACGGCCATCATCGAAAACATTTGCGA
CATAGTCGCGAAGATGACGATTCCAGCCAGTGTCATGGACGCTAGATCCA
TGCCACGAGTGTTGACGGACATTTTGTTCGCCGAGAAACAGCCAGGTCTC
ACTGATGCCCAAATGCGTGAGGCAATAGAGACATTCACTCTCGTTTTGAG
TAAGTTCGCTCCTATTTGTACACGAAATCAAGAGATGATAAAAACAGCGA
AACACAGTACCTTATTTCGAAAGCTGTGCATTCGTTCACTCATGAAACTC
AAGTCGAGCGTAGAGGGAAAGAGCTGGGGAAGATGCAGGCAACTATTAAC
ATTAACATTCGCGATTTAGATTCACTCTCGTTTTGAGTAAGTTCGCTCCT
ATTTGTACACGAAATCAAGAGATGATAAAAACAGCGAAACACAGTACCTT
ATTTCGAAAGCTGTGCATTCGTTCACTCATGAAACTCAAGTCGAGCGTAG
AGGGAAAGAGCTGGGGAAGATGCAGGCAACTATTAACATTAACATTCGCG
ATTTAG
back to top