mRNA_H-elongata_contig56964.13151.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56964.13151.1
Unique NamemRNA_H-elongata_contig56964.13151.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56964.13151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56964contigH-elongata_contig56964:2586..3297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size575
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56964.13151.1prot_H-elongata_contig56964.13151.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56964 2773..3251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.8170211-UTR-H-elongata_contig56964:2585..27721622930925.8170211-UTR-H-elongata_contig56964:2585..2772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56964 2586..2772 +
1691679627.5837505-UTR-H-elongata_contig56964:2585..27721691679627.5837505-UTR-H-elongata_contig56964:2585..2772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56964 2586..2772 +
1622930925.8714638-UTR-H-elongata_contig56964:3251..32971622930925.8714638-UTR-H-elongata_contig56964:3251..3297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56964 3252..3297 +
1691679627.6328585-UTR-H-elongata_contig56964:3251..32971691679627.6328585-UTR-H-elongata_contig56964:3251..3297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56964 3252..3297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.8362162-CDS-H-elongata_contig56964:2772..28931622930925.8362162-CDS-H-elongata_contig56964:2772..2893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56964 2773..2893 +
1691679627.5973327-CDS-H-elongata_contig56964:2772..28931691679627.5973327-CDS-H-elongata_contig56964:2772..2893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56964 2773..2893 +
1622930925.8550484-CDS-H-elongata_contig56964:3030..32511622930925.8550484-CDS-H-elongata_contig56964:3030..3251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56964 3031..3251 +
1691679627.613628-CDS-H-elongata_contig56964:3030..32511691679627.613628-CDS-H-elongata_contig56964:3030..3251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56964 3031..3251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56964.13151.1

>prot_H-elongata_contig56964.13151.1 ID=prot_H-elongata_contig56964.13151.1|Name=mRNA_H-elongata_contig56964.13151.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MGHAGTGAMTQVIEIEWGGYAGRRCCNAERGEGRDRGASTPAFETPTPRS
VAPRGGAAGAGGRVVAVVRRGCVNNANRTGHSTSSGIAPHKGRLFANWRS
APLRVMVMPVCAV*
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mRNA from alignment at H-elongata_contig56964:2586..3297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56964.13151.1 ID=mRNA_H-elongata_contig56964.13151.1|Name=mRNA_H-elongata_contig56964.13151.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=712bp|location=Sequence derived from alignment at H-elongata_contig56964:2586..3297+ (Himanthalia elongata Himel1 dioecious)
GGCTGCGACGGTGACGGAGGAGAAGTAGGAGGGAGTCGAAAAGGACATCG
TGTCGCCTGCAGTGGCGGCTTCCGCGGCGACGGGGATAGCGGAAGATGGA
GTTCAAGGGAGCCTCACGCCACCGGTACTGACTAAAAACGAGGAACCGAT
CGCACCGGCAGCACCCGCACGACCAGTGGAAGTAACGATGGGGCATGCAG
GGACTGGTGCGATGACGCAGGTTATTGAAATTGAATGGGGGGGATACGCC
GGTCGCCGATGCTGTAACGCTGAGAGAGGGGAGGGGAGGGATCGAGGCGC
GAGCACCCGCAGCCACAGTGGCGAATACGGTGGCGCTGGTAATGACGGTA
GTGATGGGCCGTCCCGTAAGCGACGAGAATCTGCCAGATCGGAAACGGGA
TGAAGGCCTCAACCGAGCTTGGGATAGAGGGGGTTGAGGTCGTAGCGGCA
TTCGAAACGCCAACACCACGGAGTGTAGCGCCCAGAGGTGGGGCAGCGGG
AGCAGGAGGGAGAGTTGTAGCGGTAGTCCGGCGCGGTTGTGTAAATAATG
CAAATAGGACAGGCCACTCAACGTCTTCAGGGATAGCTCCCCATAAGGGG
AGGTTATTTGCGAACTGGCGTAGCGCCCCCTTACGTGTCATGGTAATGCC
AGTTTGCGCGGTCTAATGCAAATTGATTTTAAAAAAATGTATTTTCCCTG
TTCAGCTTACCA
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Coding sequence (CDS) from alignment at H-elongata_contig56964:2586..3297+

>mRNA_H-elongata_contig56964.13151.1 ID=mRNA_H-elongata_contig56964.13151.1|Name=mRNA_H-elongata_contig56964.13151.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig56964:2586..3297+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCATGCAGGGACTGGTGCGATGACGCAGGTTATTGAAATTGAATG
GGGGGGATACGCCGGTCGCCGATGCTGTAACGCTGAGAGAGGGGAGGGGA
GGGATCGAGGCGCGAGCACCCATGGGGCATGCAGGGACTGGTGCGATGAC
GCAGGTTATTGAAATTGAATGGGGGGGATACGCCGGTCGCCGATGCTGTA
ACGCTGAGAGAGGGGAGGGGAGGGATCGAGGCGCGAGCACCCCGGCATTC
GAAACGCCAACACCACGGAGTGTAGCGCCCAGAGGTGGGGCAGCGGGAGC
AGGAGGGAGAGTTGTAGCGGTAGTCCGGCGCGGTTGTGTAAATAATGCAA
ATAGGACAGGCCACTCAACGTCTTCAGGGATAGCTCCCCATAAGGGGAGG
TTATTTGCGAACTGGCGTAGCGCCCCCTTACGTGTCATGGTAATGCCAGT
TTGCGCGGTCTAACGGCATTCGAAACGCCAACACCACGGAGTGTAGCGCC
CAGAGGTGGGGCAGCGGGAGCAGGAGGGAGAGTTGTAGCGGTAGTCCGGC
GCGGTTGTGTAAATAATGCAAATAGGACAGGCCACTCAACGTCTTCAGGG
ATAGCTCCCCATAAGGGGAGGTTATTTGCGAACTGGCGTAGCGCCCCCTT
ACGTGTCATGGTAATGCCAGTTTGCGCGGTCTAA
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