mRNA_H-elongata_contig56918.13145.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56918.13145.1
Unique NamemRNA_H-elongata_contig56918.13145.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56918.13145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56918contigH-elongata_contig56918:540..2792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1532
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56918.13145.1prot_H-elongata_contig56918.13145.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56918 575..1607 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.032394-UTR-H-elongata_contig56918:539..5741622930925.032394-UTR-H-elongata_contig56918:539..574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56918 540..574 +
1691679627.3129697-UTR-H-elongata_contig56918:539..5741691679627.3129697-UTR-H-elongata_contig56918:539..574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56918 540..574 +
1622930925.137306-UTR-H-elongata_contig56918:1607..27921622930925.137306-UTR-H-elongata_contig56918:1607..2792Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56918 1608..2792 +
1691679627.3696842-UTR-H-elongata_contig56918:1607..27921691679627.3696842-UTR-H-elongata_contig56918:1607..2792Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56918 1608..2792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.054366-CDS-H-elongata_contig56918:574..6491622930925.054366-CDS-H-elongata_contig56918:574..649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56918 575..649 +
1691679627.329754-CDS-H-elongata_contig56918:574..6491691679627.329754-CDS-H-elongata_contig56918:574..649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56918 575..649 +
1622930925.1188114-CDS-H-elongata_contig56918:1370..16071622930925.1188114-CDS-H-elongata_contig56918:1370..1607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56918 1371..1607 +
1691679627.3486402-CDS-H-elongata_contig56918:1370..16071691679627.3486402-CDS-H-elongata_contig56918:1370..1607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56918 1371..1607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56918.13145.1

>prot_H-elongata_contig56918.13145.1 ID=prot_H-elongata_contig56918.13145.1|Name=mRNA_H-elongata_contig56918.13145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSRLSSMVWMLAAFFAVVSFASAGKVEVCIITNDIAPVREFETATITEDK
YNETMAAGALLGSCSEYLGQLCDDGDFCTMDYDSENITCRAIPRPTAENC
AQI*
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mRNA from alignment at H-elongata_contig56918:540..2792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56918.13145.1 ID=mRNA_H-elongata_contig56918.13145.1|Name=mRNA_H-elongata_contig56918.13145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2253bp|location=Sequence derived from alignment at H-elongata_contig56918:540..2792+ (Himanthalia elongata Himel1 dioecious)
AGGTTGAAATTATATCCAATCCTTGTAGTGATATCATGTCCCGACTGTCT
TCGATGGTATGGATGCTGGCGGCTTTCTTCGCGGTGGTATCATTTGCCTC
CGCTGGCAAGGTGGGATACTAACTGAACCAACTGTAGTACTAAAATAAAT
ACAAGTAGATTTTTTTTTAGAGAAAGGAGACGACAAAGCGTGACCGATAC
ATGATTGATTGCCCCTAGAGAGAGAGTAAAACCTACTTCTTCGGTGCGAG
GATTTCACCTTTTATTGTATTGTTGTTTTGTATAATAGGTAGATGAGAAA
ACCAGTTTCTTCGTGTAGTACTTGCTCTATATTATGCAACGTGTATTACT
TACTACTTGACTCTATGCCGAATGCTTGTAGAATTGCAGGAGATATCTCA
GGGAAGGATTTCCCACGCGCGCGCGTCCGCCCTCGTTGCTTGTGATCGAT
TATTTTTTTCTCCCGTCGTTGCCACTTTTTTTGCGCAGTACAACGACTCC
TCATCGCTCTTGCCATTTCTCGCCTTCAGCGTATTGCCCCATCGTTGAAT
TGGCTAGATCGTCAAGTTCCTTGCACAACAACTATTATTATTAGTAAAAT
CTTAGCAGCAGATTTAAAGCGATTTAGTATGTGTGGTCATCACATCTAGC
TACTGTAACAGAGGATGATGAAAACATGAAAGTGAACACAGGTAAGTCGT
AAAAGGCGCCTGGGGGGTTCCCCGTCTTTCCGCTGCTCCTGTAAAATGAA
TAAAGAAAACTCGATCAGTTCGACAACTGCCGAGGGCCGAACGAACGAAC
GAACGAACGCTGCCTTTCCGTCTTCTTGCAGGTGGAAGTTTGCATTATCA
CCAACGACATCGCACCCGTGAGGGAGTTCGAGACAGCGACCATCACCGAG
GACAAATATAATGAAACGATGGCGGCGGGTGCACTCCTGGGTTCGTGCTC
CGAGTACCTTGGACAGCTTTGCGACGATGGAGACTTCTGCACAATGGATT
ACGACTCCGAGAACATCACCTGTCGGGCAATTCCCCGGCCGACGGCAGAA
AACTGCGCCCAGATTTAACCTCATTATTTCATTAATGGCGACTGGAGCGT
GATCAGTCACCAAAAACTTAACTAATTTTGTGCACCACATGCGAAGCTTG
CCACCAGTCAGCCCTGGAGGTGTGGCGTAACCAGAAACTTGGGCTTATAG
TTAGCGTGCTGGGATTATTTTTTTTCGTAGTTGGTACGGATTCAGTAAGG
GTTCCCTCCCAATTCTCTAAAGCTCAAGCGCTCTCAGCTGGACAGACTAC
TCTCATCGCAGCGTTTAATATCTACGCCAAACCTCGTTCAGTGAAATGAA
ACAATAGCCGTCTGCCTTCAAATGTACAAGAGAGTTTGCGGGGATCCTCT
ATTTCGCAGGAATTATTGACTCTCCTTTTGGAGCTGTCATGCTCGTATTG
GGGGTAAGCGGGATGGCGAAGCCGTATGGCGTAAAACGGAACACTTCGCG
CAAAATCAATATTCGTTGTTTATATGTTTTTCAGGGTGGTTAATAGTGCG
AGTTGTGGACGCTGCAGCTAAAAAGTGCCAGGATTCCTGCGCCGGAGGTC
GTTCTCGTACGTATTTCTGCAGACACACCGTATTAATCATAGAACATCTG
GAGTTAAAGAACCGTACTACACAGTGTAGTAATGCCTGTAACCCTCTGCG
ATATGTCGAGTACCTCGTATAACTGGGCGGTGGTTCGATCAATGGAGCGT
CGTGTGATCATTATCACATGTATATGTGGTCACAGATAGCATATTATATC
AAAGACCAACCTGTACCGATCGACTAGTATTATACCTGGTATGTCAATTT
TGTGGCGGCGGGGGCTTCGCAAGTAAGGGTCATTGTGGCTCGCTTGGGAT
CACTGGTGTGGGGTATACAACTGTATTAGGTTTAGTGACGTGGCAAATGA
TGTGGAGGTAACTTACATCCACTACCCTGCCACCCTAGATTGTCTCTCTC
GCTATGTAGTATTGGCGTATGTATGTGGTGGTGTAACCTGGTGTGGCTGC
AGAAGCTGACCCAGATCGTTGTTGAGCTAGCCGAGCAGTGCTCAAGCTGA
AATTGAACAAAACACGCCGGTGTTGAATTTGGGTGCTTAGATGGCCAACA
AAAGCTTAAGAACAATTGACTGTATCTGAACGTCCAGGAGTTAGAAATGC
CGATGAAAGGAAGTGAGAGGGTGTGGTTGTGTCATCACCATCTCGATACG
AAC
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Coding sequence (CDS) from alignment at H-elongata_contig56918:540..2792+

>mRNA_H-elongata_contig56918.13145.1 ID=mRNA_H-elongata_contig56918.13145.1|Name=mRNA_H-elongata_contig56918.13145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig56918:540..2792+ (Himanthalia elongata Himel1 dioecious)
ATGTCCCGACTGTCTTCGATGGTATGGATGCTGGCGGCTTTCTTCGCGGT
GGTATCATTTGCCTCCGCTGGCAAGATGTCCCGACTGTCTTCGATGGTAT
GGATGCTGGCGGCTTTCTTCGCGGTGGTATCATTTGCCTCCGCTGGCAAG
GTGGAAGTTTGCATTATCACCAACGACATCGCACCCGTGAGGGAGTTCGA
GACAGCGACCATCACCGAGGACAAATATAATGAAACGATGGCGGCGGGTG
CACTCCTGGGTTCGTGCTCCGAGTACCTTGGACAGCTTTGCGACGATGGA
GACTTCTGCACAATGGATTACGACTCCGAGAACATCACCTGTCGGGCAAT
TCCCCGGCCGACGGCAGAAAACTGCGCCCAGATTTAAGTGGAAGTTTGCA
TTATCACCAACGACATCGCACCCGTGAGGGAGTTCGAGACAGCGACCATC
ACCGAGGACAAATATAATGAAACGATGGCGGCGGGTGCACTCCTGGGTTC
GTGCTCCGAGTACCTTGGACAGCTTTGCGACGATGGAGACTTCTGCACAA
TGGATTACGACTCCGAGAACATCACCTGTCGGGCAATTCCCCGGCCGACG
GCAGAAAACTGCGCCCAGATTTAA
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