mRNA_H-elongata_contig56648.13110.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56648.13110.1
Unique NamemRNA_H-elongata_contig56648.13110.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Match: UPI000763A052 (zinc finger BED domain-containing protein 1-like n=1 Tax=Diuraphis noxia TaxID=143948 RepID=UPI000763A052)

HSP 1 Score: 67.8 bits (164), Expect = 9.180e-11
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  118 AITTDIWTSGPGDTFMCVTAHFIEAGTAELVSATISCRPFPGSHTAKHIAEHLEVVLADFGISDSIIALTTDTAANVKCA 357
            AITTDIWTS   D+FM +TAHF++    EL +  +  +    +HT  H+++ +   L ++ I + ++A+ TD AAN+K A
Sbjct:  172 AITTDIWTSMNTDSFMTLTAHFVDTNLRELKTVVLCTKKLESNHTGVHLSQVMSKELTEWNILNKVVAIVTDGAANIKLA 251          
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Match: UPI0007639FC7 (zinc finger BED domain-containing protein 1-like n=1 Tax=Diuraphis noxia TaxID=143948 RepID=UPI0007639FC7)

HSP 1 Score: 66.6 bits (161), Expect = 2.300e-10
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  118 AITTDIWTSGPGDTFMCVTAHFIEAGTAELVSATISCRPFPGSHTAKHIAEHLEVVLADFGISDSIIALTTDTAANVKCA 357
            AITTDIWTS   D+FM +TAHF+++   EL +  +  +    +HT  ++++ +   L+D+ I + ++A+ TD  AN+K A
Sbjct:   63 AITTDIWTSXNTDSFMTLTAHFVDSNLRELRTVVLCTKKLESNHTGVYLSQIMSKELSDWNILNKVVAIVTDGGANIKLA 142          
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Match: A0A699LZ84_TANCI (Zinc finger BED domain-containing protein DAYSLEEPER n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699LZ84_TANCI)

HSP 1 Score: 65.1 bits (157), Expect = 3.530e-10
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  121 ITTDIWTSGPG--DTFMCVTAHFIEAGTAELVSATISCRPFPGSHTAKHIAEHLEVVLADFGISDSIIALTTDTAAN 345
            +TTD+W++  G   ++MCVTAH+IE GT +++   IS   FP  HT   + + L  VL +F + D ++++T D A+N
Sbjct:  115 LTTDVWSAPHGVPGSYMCVTAHWIEPGTCQMMKRVISFEEFPSPHTGHALFKMLIKVLTNFNLEDKVMSITLDNASN 191          
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Match: UPI000DC14DC8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC14DC8)

HSP 1 Score: 65.5 bits (158), Expect = 6.060e-10
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   85 KLRDRMKD-KRPAITTDIWTSGPGDTFMCVTAHFIEA-GTAELVSATISCRPFPGSHTAKHIAEHLEVVLADFGISDSIIALTTDTAANVKCA 357
            +++D++K+     +TTD WTS   ++F+ VTAHFI+     EL S  ++C  F  SHTA ++A  L+  + ++G+S  I  + +D AAN+K A
Sbjct:  186 RVKDKLKNVSAVCLTTDGWTSRNNESFLAVTAHFIDPDNVTELSSVLLACTSFEDSHTADNLALFLKNTVDEWGLSQRITVVVSDNAANIKSA 278          
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Match: UPI001113C9E3 (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI001113C9E3)

HSP 1 Score: 65.1 bits (157), Expect = 8.170e-10
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  121 ITTDIWTSGPGDTFMCVTAHFIEAGTA-ELVSATISCRPFPGSHTAKHIAEHLEVVLADFGISDSIIALTTDTAANVKCA 357
            +TTD WTS    +F+ VTAHFI+     E+ +  + C  FP SHT  ++A  L+ ++A++G+S  + A+ TD AAN+K A
Sbjct:   87 LTTDGWTSITNQSFVAVTAHFIDPKKDYEISTVLLGCTDFPQSHTGDNLAIFLKNIVAEWGLSQHVAAVVTDNAANMKAA 166          
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Match: J9LZV6_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LZV6_ACYPI)

HSP 1 Score: 65.1 bits (157), Expect = 8.340e-10
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  121 ITTDIWTSGPGDTFMCVTAHFIEAGTA-ELVSATISCRPFPGSHTAKHIAEHLEVVLADFGISDSIIALTTDTAANVKCA 357
            +TTD WTS    +F+ VTAHFI+     E+ +  + C  FP SHT  ++A  L+ ++A++G+S  + A+ TD AAN+K A
Sbjct:  267 LTTDGWTSITNQSFVAVTAHFIDPKKDYEISTVLLGCTDFPQSHTGDNLAIFLKNIVAEWGLSQHVAAVVTDNAANMKAA 346          
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Match: UPI001ABECC3C (E3 SUMO-protein ligase ZBED1-like isoform X1 n=3 Tax=Bufo TaxID=8383 RepID=UPI001ABECC3C)

HSP 1 Score: 64.3 bits (155), Expect = 1.580e-9
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  121 ITTDIWTSGPGDTFMCVTAHFIEAGTAELVSATISCRPFPGSHTAKHIAEHLEVVLADFGISDSIIALTTDTAANVKCA 357
            +TTD WTS    +FM VT H+I+     L+S  + C  F   HTA ++A  L  +  ++GI+D ++A T+D A+N+K A
Sbjct:  397 LTTDCWTSRTTTSFMAVTCHYIDENF-RLLSCLLDCFSFTERHTADNLAAELNKICEEWGITDKVVACTSDNASNIKAA 474          
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Match: UPI00143F9293 (zinc finger BED domain-containing protein 1-like n=2 Tax=Drosophila miranda TaxID=7229 RepID=UPI00143F9293)

HSP 1 Score: 63.9 bits (154), Expect = 2.030e-9
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  121 ITTDIWTSGPGDTFMCVTAHFIEAGTAELVSATISCRPFPGSHTAKHIAEHLEVVLADFGISDSIIALTTDTAANV 348
            +TTD WTS   ++++ VTAHFI+    EL S  ++C  F   HT+ ++   L+ V AD+ I D I A+ +D AAN+
Sbjct:   66 LTTDGWTSLTNESYIAVTAHFIDKSNMELSSHMLACEAFGERHTSLNLCSFLQSVAADWKILDKITAIASDNAANI 141          
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Match: A0A814LX90_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814LX90_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 2.810e-9
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  121 ITTDIWTSGPGDTFMCVTAHFIEAGTAELVSATISCRPFPGSHTAKHIAEHLEVVLADFGISDSIIALTTDTAANV 348
            +TTDIWTS PGD ++ VT HFI+    +L    +  R FPG H    I++ L+ +  D+GI   I ++T+D A+N+
Sbjct:  234 VTTDIWTSSPGDPYISVTLHFID-NQNKLKHLLLDMRHFPGVHDYITISDMLDKIFKDYGIKHKIYSITSDNASNM 308          
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Match: UPI00046BAE69 (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI00046BAE69)

HSP 1 Score: 63.2 bits (152), Expect = 3.820e-9
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  118 AITTDIWTSGPGDTFMCVTAHFIEAGTAELVSATISCRPFPGSHTAKHIAEHLEVVLADFGISDSIIALTTDTAANVKCA 357
            AITTDIWTS   D+FM +TAHF++    EL +  +  +    +HT  ++++ +   L ++ I + ++A+ TD A N+K A
Sbjct:  129 AITTDIWTSMNTDSFMTLTAHFVDTNLRELSTVVLCTKKLESNHTGVYLSQVMTEELMEWNILNKVVAIVTDGAVNIKLA 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56648.13110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000763A0529.180e-1138.75zinc finger BED domain-containing protein 1-like n... [more]
UPI0007639FC72.300e-1037.50zinc finger BED domain-containing protein 1-like n... [more]
A0A699LZ84_TANCI3.530e-1038.96Zinc finger BED domain-containing protein DAYSLEEP... [more]
UPI000DC14DC86.060e-1037.63zinc finger BED domain-containing protein 1-like n... [more]
UPI001113C9E38.170e-1041.25zinc finger BED domain-containing protein 1-like n... [more]
J9LZV6_ACYPI8.340e-1041.25Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
UPI001ABECC3C1.580e-939.24E3 SUMO-protein ligase ZBED1-like isoform X1 n=3 T... [more]
UPI00143F92932.030e-940.79zinc finger BED domain-containing protein 1-like n... [more]
A0A814LX90_9BILA2.810e-940.79Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
UPI00046BAE693.820e-936.25zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56648contigH-elongata_contig56648:2961..3767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.9
Seed ortholog evalue4.8e-10
Seed eggNOG ortholog7029.ACYPI29757-PA
EggNOG free text desc.RNA polymerase II regulatory region DNA binding
EggNOG OGs39TTD@33154,3BCXB@33208,3CYBV@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.9378119-CDS-H-elongata_contig56648:2960..31131622930920.9378119-CDS-H-elongata_contig56648:2960..3113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56648 2961..3113 +
1691679625.4508905-CDS-H-elongata_contig56648:2960..31131691679625.4508905-CDS-H-elongata_contig56648:2960..3113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56648 2961..3113 +
1622930920.9566524-CDS-H-elongata_contig56648:3554..37671622930920.9566524-CDS-H-elongata_contig56648:3554..3767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56648 3555..3767 +
1691679625.4637835-CDS-H-elongata_contig56648:3554..37671691679625.4637835-CDS-H-elongata_contig56648:3554..3767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56648 3555..3767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56648.13110.1prot_H-elongata_contig56648.13110.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56648 2961..3767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56648.13110.1

>prot_H-elongata_contig56648.13110.1 ID=prot_H-elongata_contig56648.13110.1|Name=mRNA_H-elongata_contig56648.13110.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
AAKDSSLQVPSRSSVVERVRAMSMKAELKLRDRMKDKRPAITTDIWTSGP
GDTFMCVTAHFIEAGTAELVSATISCRPFPGSHTAKHIAEHLEVVLADFG
ISDSIIALTTDTAANVKCAGTK
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mRNA from alignment at H-elongata_contig56648:2961..3767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56648.13110.1 ID=mRNA_H-elongata_contig56648.13110.1|Name=mRNA_H-elongata_contig56648.13110.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=807bp|location=Sequence derived from alignment at H-elongata_contig56648:2961..3767+ (Himanthalia elongata Himel1 dioecious)
GCCGCCAAGGACTCCTCCCTCCAAGTTCCCTCTCGCTCTTCTGTTGTTGA ACGGGTGCGGGCGATGTCCATGAAGGCGGAATTGAAGCTTCGAGACAGGA TGAAGGACAAGCGACCGGCCATCACCACGGACATATGGACTTCCGGCCCC GGGGTGAGTGGCGTCTGAAATGAGCGGCAGATTTAGATGGCGCATTCCAT GTTTTTATTTCTGGCGATTCCCTTCGATGTCGTGATGCCGCTGCTGGTGT GGAGCCCAGCTTTTTTCTGGGGGGGGGGGTCCAGTCCGAGTATGCGAAAC AATGCTGCTGCCGGGCCCCGCCTCTTTTTTTCCTTTTTTACCTCTCAAGT ATGGAAAGGAATGCTGATGTCGCGCCGAGACTTTTTTTTGCCGGAGTACG TTAAACAATGCTGCTGCCGGACCCCGCCTCTTCTCTTCTTATTTTCCAAT CGAGTATGGGAAGGAATGCTGATGTCGCGCGTGATAGACCACCTCCTGCC CGCTCTCTGTTTCAATATTTGTCGTGACTTGATGATTTATCACATCTCGT TCGTCCCCCGGCCTTATACCCCCCTCGATATATGTTGCGTACAGGACACT TTCATGTGCGTGACGGCCCACTTCATTGAAGCTGGAACGGCAGAGCTCGT GTCGGCCACCATCTCCTGCAGGCCATTCCCGGGATCTCACACTGCCAAGC ACATCGCCGAGCACCTGGAGGTCGTGCTCGCGGATTTTGGCATCTCGGAC TCCATCATCGCGTTGACGACGGATACAGCGGCGAACGTGAAGTGCGCCGG GACGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig56648:2961..3767+

>mRNA_H-elongata_contig56648.13110.1 ID=mRNA_H-elongata_contig56648.13110.1|Name=mRNA_H-elongata_contig56648.13110.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig56648:2961..3767+ (Himanthalia elongata Himel1 dioecious)
GCCGCCAAGGACTCCTCCCTCCAAGTTCCCTCTCGCTCTTCTGTTGTTGA
ACGGGTGCGGGCGATGTCCATGAAGGCGGAATTGAAGCTTCGAGACAGGA
TGAAGGACAAGCGACCGGCCATCACCACGGACATATGGACTTCCGGCCCC
GGGGCCGCCAAGGACTCCTCCCTCCAAGTTCCCTCTCGCTCTTCTGTTGT
TGAACGGGTGCGGGCGATGTCCATGAAGGCGGAATTGAAGCTTCGAGACA
GGATGAAGGACAAGCGACCGGCCATCACCACGGACATATGGACTTCCGGC
CCCGGGGACACTTTCATGTGCGTGACGGCCCACTTCATTGAAGCTGGAAC
GGCAGAGCTCGTGTCGGCCACCATCTCCTGCAGGCCATTCCCGGGATCTC
ACACTGCCAAGCACATCGCCGAGCACCTGGAGGTCGTGCTCGCGGATTTT
GGCATCTCGGACTCCATCATCGCGTTGACGACGGATACAGCGGCGAACGT
GAAGTGCGCCGGGACGAAGGACACTTTCATGTGCGTGACGGCCCACTTCA
TTGAAGCTGGAACGGCAGAGCTCGTGTCGGCCACCATCTCCTGCAGGCCA
TTCCCGGGATCTCACACTGCCAAGCACATCGCCGAGCACCTGGAGGTCGT
GCTCGCGGATTTTGGCATCTCGGACTCCATCATCGCGTTGACGACGGATA
CAGCGGCGAACGTGAAGTGCGCCGGGACGAAG
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