mRNA_H-elongata_contig56499.13098.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56499.13098.1
Unique NamemRNA_H-elongata_contig56499.13098.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56499.13098.1 vs. uniprot
Match: D7FIT0_ECTSI (Chain A, Crystal Structure Of Human Phosphohistidine Phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT0_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.050e-14
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 LIRGLKSAAYHKDAAFPTMKLLQEAGAGASITGGGRIKHNTGRKSIFVYGW 153
            LIRGL+SA YH +AA PTM  L+EAGA A+ITGGGRIKH++ R+SIF+YG+
Sbjct:   75 LIRGLQSATYHIEAAEPTMARLREAGADATITGGGRIKHSSKRRSIFIYGY 125
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BLAST of mRNA_H-elongata_contig56499.13098.1 vs. uniprot
Match: A0A6H5JGZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 9.540e-14
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 LIRGLKSAAYHKDAAFPTMKLLQEAGAGASITGGGRIKHNTGRKSIFVYGW 153
            LIRGLKSA YH +AA PTM  L+EAGA A++TGGGRIKH++ R+SIF+YG+
Sbjct:  187 LIRGLKSAKYHIEAAEPTMARLREAGADATVTGGGRIKHSSKRRSIFIYGY 237
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BLAST of mRNA_H-elongata_contig56499.13098.1 vs. uniprot
Match: A0A2R5GAQ9_9STRA (Sex-regulated protein janus-A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAQ9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.250e-6
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 LIRGLKSAAYHKDAAFPTMKLLQE---AGAGASITGGGRIKHNTGRKSIFVYGW 153
            L+RG K AAYHKDAA PT++LLQ+    G    + GGGRI H++  K I ++G+
Sbjct:   80 LVRGRKFAAYHKDAAQPTIELLQQNLTPGMYFRVMGGGRITHSSETKKIEIFGY 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56499.13098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FIT0_ECTSI3.050e-1468.63Chain A, Crystal Structure Of Human Phosphohistidi... [more]
A0A6H5JGZ6_9PHAE9.540e-1468.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5GAQ9_9STRA5.250e-650.00Sex-regulated protein janus-A n=1 Tax=Hondaea ferm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56499contigH-elongata_contig56499:444..653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionJanus
Ec32 orthologEc-20_003030.1
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930919.2849298-CDS-H-elongata_contig56499:443..6531622930919.2849298-CDS-H-elongata_contig56499:443..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56499 444..653 -
1691679624.6355827-CDS-H-elongata_contig56499:443..6531691679624.6355827-CDS-H-elongata_contig56499:443..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56499 444..653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56499.13098.1prot_H-elongata_contig56499.13098.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56499 444..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56499.13098.1

>prot_H-elongata_contig56499.13098.1 ID=prot_H-elongata_contig56499.13098.1|Name=mRNA_H-elongata_contig56499.13098.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
LIRGLKSAAYHKDAAFPTMKLLQEAGAGASITGGGRIKHNTGRKSIFVYG
WVRLRSILDHKCKLFSVQSV
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mRNA from alignment at H-elongata_contig56499:444..653-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56499.13098.1 ID=mRNA_H-elongata_contig56499.13098.1|Name=mRNA_H-elongata_contig56499.13098.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig56499:444..653- (Himanthalia elongata Himel1 dioecious)
TTGATCAGGGGCCTCAAGTCCGCAGCATACCACAAGGATGCCGCCTTTCC
CACCATGAAACTCCTGCAGGAAGCCGGTGCGGGGGCCTCCATAACGGGTG
GGGGACGGATCAAGCACAACACCGGCAGAAAGAGCATCTTTGTTTACGGG
TGGGTACGGTTGCGGTCAATATTAGACCACAAGTGTAAATTGTTCAGTGT
ACAGAGTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig56499:444..653-

>mRNA_H-elongata_contig56499.13098.1 ID=mRNA_H-elongata_contig56499.13098.1|Name=mRNA_H-elongata_contig56499.13098.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig56499:444..653- (Himanthalia elongata Himel1 dioecious)
TTGATCAGGGGCCTCAAGTCCGCAGCATACCACAAGGATGCCGCCTTTCC
CACCATGAAACTCCTGCAGGAAGCCGGTGCGGGGGCCTCCATAACGGGTG
GGGGACGGATCAAGCACAACACCGGCAGAAAGAGCATCTTTGTTTACGGG
TGGGTACGGTTGCGGTCAATATTAGACCACAAGTGTAAATTGTTCAGTGT
ACAGAGTGTTTTGATCAGGGGCCTCAAGTCCGCAGCATACCACAAGGATG
CCGCCTTTCCCACCATGAAACTCCTGCAGGAAGCCGGTGCGGGGGCCTCC
ATAACGGGTGGGGGACGGATCAAGCACAACACCGGCAGAAAGAGCATCTT
TGTTTACGGGTGGGTACGGTTGCGGTCAATATTAGACCACAAGTGTAAAT
TGTTCAGTGTACAGAGTGTT
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