mRNA_H-elongata_contig5645.13094.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5645.13094.1
Unique NamemRNA_H-elongata_contig5645.13094.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Match: G4YP80_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YP80_PHYSP)

HSP 1 Score: 71.2 bits (173), Expect = 1.040e-13
Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 1
Query:    1 CAVDEVCELLSSTCSDDQSSCPPIAYCNQSVDP-CNGECDEFQECLLHSGGTTFEEYYCADSCCPSPCEDGQACLLEEVQCIRAPCPPVRVCSDD 282
            CA  E+C L + TC   ++ CPPI  C    +P C  +C + ++C + S   +    YC   C    C  G  C +E+VQCIRAPCPPV VC  +
Sbjct:   32 CAPGEICVLETVTCI--RAPCPPIQTCCVPAEPVCTKKCPKNEKCQIDSADNS---QYCLSPCATVRCMSGYTCQVEQVQCIRAPCPPVAVCKPE 121          
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Match: H3H1D9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1D9_PHYRM)

HSP 1 Score: 74.3 bits (181), Expect = 1.920e-13
Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 1
Query:    1 CAVDEVCELLSSTCSDDQSSCPPIAYC------NQSVDPCNGECDEFQECLLHSGGTTFEEYYCADSCCPSPCEDGQACLLEEVQCIRAPCPPVRVCSD 279
            C   + C L + TC   ++ CPPI  C      + S   C  +C EFQEC ++    +    YCAD C    C +G  C L+EVQCIRAPCPPV  C++
Sbjct:  459 CQPGQTCVLQTVTCV--RAPCPPIQTCVASSESSSSGSECAMKCGEFQECRIYDADGSE---YCADVCAEGRCPEGTTCELQEVQCIRAPCPPVAECTN 552          
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.280e-13
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:  100 CNGECDEFQECLLHSGGTTFEEYYCADSCC-PSPCEDGQACLLEEVQCIRAPCPPVRVCS 276
            C+  C EFQECLL+  G    EYYCAD+C  P  C D + C+L EV CIRAPCPPV  C 
Sbjct:  163 CDVSCGEFQECLLYEDGLE-SEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASCE 221          
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Match: A0A662Y1D0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1D0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.420e-13
Identity = 41/99 (41.41%), Postives = 49/99 (49.49%), Query Frame = 1
Query:    1 CAVDEVCELLSSTCSDDQSSCPPIAYC------NQSVDPCNGECDEFQECLLHSGGTTFEEYYCADSCCPSPCEDGQACLLEEVQCIRAPCPPVRVCSD 279
            C   E C L + TC   ++ CPPI  C      ++    C   C EFQ C ++    T    YCAD C    C     C L+EVQCIRAPCPPV VC D
Sbjct:  353 CQPGEKCVLQTVTCI--RAPCPPIQTCVAIAGDSEETPACTMACGEFQTCQIYEPDGTE---YCADVCSEGRCPQDSTCELQEVQCIRAPCPPVAVCKD 446          
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Match: W2QDR7_PHYPN (Uncharacterized protein n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QDR7_PHYPN)

HSP 1 Score: 68.2 bits (165), Expect = 1.440e-12
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 1
Query:    1 CAVDEVCELLSSTCSDDQSSCPPIAYC-NQSVDP---------CNGECDEFQECLLHSGGTTFEEYYCADSCCPSPCEDGQACLLEEVQCIRAPCPPVRVCS 276
            C   E C L    C   ++ CPPI  C  ++ +P         C  EC +FQEC ++    +    YCAD C    C  G  C L+EVQCIRAPCPP+  C+
Sbjct:   33 CQPGETCALQMVDCI--RAPCPPIQACVGKTSNPNKGAEGSLKCTMECGDFQECRIYEPDGSD---YCADVCAEGRCPKGSICELQEVQCIRAPCPPMATCN 129          
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Match: A0A3F2RNQ6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNQ6_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.890e-12
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    4 AVDEVCELLSSTCSDDQSSCPPIAYC--------NQSVDPCNGECDEFQECLLHSGGTTFEEYYCADSCCPSPCEDGQACLLEEVQCIRAPCPPVRVCSDD 282
            A+ EVC L +  C   ++ CP I  C        N +V  C+ EC EFQEC +++   +    YCAD C    C  G  C L+EVQCIRAPCPPV VC+++
Sbjct:  272 ALGEVCVLETVNCI--RAPCP-IQTCVATSSGSANSTV--CSMECGEFQECQIYAPDGSE---YCADVCIEGRCPKGVTCELQEVQCIRAPCPPVAVCNNE 364          
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Match: A0A329SZI3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329SZI3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.230e-12
Identity = 39/105 (37.14%), Postives = 54/105 (51.43%), Query Frame = 1
Query:    1 CAVDEVCELLSSTCSDDQSSCPPIAYC---------NQSVD---PCNGECDEFQECLLHSGGTTFEEYYCADSCCPSPCEDGQACLLEEVQCIRAPCPPVRVCSD 279
            C   + C + + TC   ++ CPPI  C         +  V+    C  EC +FQEC ++      +  YCAD C    C +G  C L+EVQCIRAPCPPV  C++
Sbjct:  601 CQPGKTCVVQTVTCI--RAPCPPIQTCVATFSGSKGSNGVEGSPTCTMECGDFQECRIYEPD---DSEYCADVCAEGRCPEGFTCELQEVQCIRAPCPPVATCNN 700          
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Match: A0A3R7K578_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K578_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.460e-11
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  100 CNGECDEFQECLLHSGGTTFEEYYCADSCCPSPCEDGQACLLEEVQCIRAPCPPVRVCSDD 282
            C+ EC EFQEC +++   +    YCAD C    C  G  C L+EVQCIRAPCPPV VC+++
Sbjct:  256 CSMECGEFQECQIYAPDGSE---YCADVCIEGRCPKGVTCELQEVQCIRAPCPPVAVCNNE 313          
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Match: A0A225VX25_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VX25_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.010e-11
Identity = 32/92 (34.78%), Postives = 46/92 (50.00%), Query Frame = 1
Query:    1 CAVDEVCELLSSTCSDDQSSCPPIAYCNQSVDPCNGECDEFQECLLHSGGTTFEEYYCADSCCPSPCEDGQACLLEEVQCIRAPCPPVRVCS 276
            C   E C+L    C   ++ C P+  C     PC   C + + C + S G+     YC + C  + C  G  C++E+VQCIRAPCPP+  C 
Sbjct:   32 CDQGETCKLQQVQCI--KAPCDPVPTCVPIEAPCTKTCPKNEVCQVDSYGSQ----YCYNPCAATTCLTGTVCVVEQVQCIRAPCPPIATCK 117          
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Match: A0A833W5N7_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W5N7_PHYIN)

HSP 1 Score: 62.4 bits (150), Expect = 2.840e-10
Identity = 35/97 (36.08%), Postives = 48/97 (49.48%), Query Frame = 1
Query:    1 CAVDEVCELLSSTCSDDQSSCPPIAYC----NQSVDP-CNGECDEFQECLLHSGGTTFEEYYCADSCCPSPCEDGQACLLEEVQCIRAPCPPVRVCS 276
            CA+ E C+L    C    + C P+  C    N   +P C  +C + + C ++S   +    YC   C    C  G  C +E+VQCIRAPCPPV VC 
Sbjct:   32 CAMGETCKLQEVQCI--TAPCNPVPTCVPIENPPPEPVCAKKCPKNERCQINSVDNSL---YCLSPCATVRCSSGYTCQVEQVQCIRAPCPPVAVCK 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5645.13094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
G4YP80_PHYSP1.040e-1338.95Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
H3H1D9_PHYRM1.920e-1340.40Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D8LCN7_ECTSI2.280e-1356.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A662Y1D0_9STRA3.420e-1341.41Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
W2QDR7_PHYPN1.440e-1238.24Uncharacterized protein n=14 Tax=Phytophthora para... [more]
A0A3F2RNQ6_9STRA6.890e-1242.57Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A329SZI3_9STRA8.230e-1237.14Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A3R7K578_9STRA1.460e-1150.82Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A225VX25_9STRA7.010e-1134.78Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A833W5N7_PHYIN2.840e-1036.08Uncharacterized protein n=1 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5645contigH-elongata_contig5645:874..1872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue9e-12
Seed eggNOG ortholog67593.Physo155252
EggNOG OGs2D2W6@1,2SP8K@2759,3QCKE@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.921607-CDS-H-elongata_contig5645:873..10381622930918.921607-CDS-H-elongata_contig5645:873..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5645 874..1038 -
1691679624.5209985-CDS-H-elongata_contig5645:873..10381691679624.5209985-CDS-H-elongata_contig5645:873..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5645 874..1038 -
1622930918.9422338-CDS-H-elongata_contig5645:1746..18721622930918.9422338-CDS-H-elongata_contig5645:1746..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5645 1747..1872 -
1691679624.5330925-CDS-H-elongata_contig5645:1746..18721691679624.5330925-CDS-H-elongata_contig5645:1746..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5645 1747..1872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5645.13094.1prot_H-elongata_contig5645.13094.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5645 874..1872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5645.13094.1

>prot_H-elongata_contig5645.13094.1 ID=prot_H-elongata_contig5645.13094.1|Name=mRNA_H-elongata_contig5645.13094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
CAVDEVCELLSSTCSDDQSSCPPIAYCNQSVDPCNGECDEFQECLLHSGG
TTFEEYYCADSCCPSPCEDGQACLLEEVQCIRAPCPPVRVCSDDDP*
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mRNA from alignment at H-elongata_contig5645:874..1872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5645.13094.1 ID=mRNA_H-elongata_contig5645.13094.1|Name=mRNA_H-elongata_contig5645.13094.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at H-elongata_contig5645:874..1872- (Himanthalia elongata Himel1 dioecious)
TGTGCCGTGGACGAAGTCTGCGAGCTTTTGTCCTCGACATGTTCTGACGA CCAGTCTTCGTGTCCACCTATCGCTTATTGTAACCAAAGTGTTGATCCGT GCAATGGCGAGTGCGATGAATTCCAGGTGATACTTCAACCTCAATCGTAG CGCCTGACATTGTAGCCAATGCTTAAAGCGTGTCACGGCGAGTGTGATGA GCTTGCAGCGCGATACAGATTCGAAGGCTTGAACTGGGGAGAGATGTCTC CACCTATTAGGACTACAGGCTATTGTGGTATGGGAAGGGTTGCAGCATGT AGGATTATTAATCTAGACGCATGGAATGACCCCATCGACATAAAATGATA TCGCGTTCAATTTCAGTCTTACTCGTGGCGTCTTGCGTTATCAGACGCCA CCAGTGCTTTCTTCACGTGTTCGGTCAGCGTTTGCTTCGTTTCTGCGAAA ATACTGACTCAGGCATTCGATCGCAAGTGACTATTTTTGCACGTGTTTTT CGAGCGTTTGATGATTTGTTACCAATGCCGCCGAGTTGAAAAAACAATAA GTGCGGTGGATCAATAATCTGCTCATTTCCCTTGGGGTGTCTATTTGGAG GGGGGGGGGTAATTTCAGAGTCGTTCCTACTCGGGGCTCCGGCTCGAGTG AATGCGTATTAGTAAGTCTGCTAACGTTTCTCTCGCATTCTTAGGAATGC GCCCTTGGTGATTTTAGACCGGAGAACTCGGTCTACTATAGACCGGAACG TGTGTAATCCGAACCATTGGGCCAATCTTTGCCCACGGATAATTATATTT ACCTGCACAACAAACGCTCCACCCGCTACGACAGGAATGCCTGCTCCACT CCGGAGGTACTACTTTTGAAGAGTACTACTGTGCTGATTCCTGCTGTCCT AGCCCTTGCGAAGATGGCCAAGCGTGTCTGCTTGAAGAGGTTCAGTGCAT ACGGGCTCCCTGCCCACCCGTGCGCGTGTGCAGTGACGATGATCCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig5645:874..1872-

>mRNA_H-elongata_contig5645.13094.1 ID=mRNA_H-elongata_contig5645.13094.1|Name=mRNA_H-elongata_contig5645.13094.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig5645:874..1872- (Himanthalia elongata Himel1 dioecious)
TGTGCCGTGGACGAAGTCTGCGAGCTTTTGTCCTCGACATGTTCTGACGA
CCAGTCTTCGTGTCCACCTATCGCTTATTGTAACCAAAGTGTTGATCCGT
GCAATGGCGAGTGCGATGAATTCCAGTGTGCCGTGGACGAAGTCTGCGAG
CTTTTGTCCTCGACATGTTCTGACGACCAGTCTTCGTGTCCACCTATCGC
TTATTGTAACCAAAGTGTTGATCCGTGCAATGGCGAGTGCGATGAATTCC
AGGAATGCCTGCTCCACTCCGGAGGTACTACTTTTGAAGAGTACTACTGT
GCTGATTCCTGCTGTCCTAGCCCTTGCGAAGATGGCCAAGCGTGTCTGCT
TGAAGAGGTTCAGTGCATACGGGCTCCCTGCCCACCCGTGCGCGTGTGCA
GTGACGATGATCCTTGAGAATGCCTGCTCCACTCCGGAGGTACTACTTTT
GAAGAGTACTACTGTGCTGATTCCTGCTGTCCTAGCCCTTGCGAAGATGG
CCAAGCGTGTCTGCTTGAAGAGGTTCAGTGCATACGGGCTCCCTGCCCAC
CCGTGCGCGTGTGCAGTGACGATGATCCTTGA
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