mRNA_H-elongata_contig56034.13037.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: A0A6H5LDC1_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDC1_9PHAE) HSP 1 Score: 453 bits (1166), Expect = 3.680e-150 Identity = 218/278 (78.42%), Postives = 241/278 (86.69%), Query Frame = 1
Query: 1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAPMMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
+QAMGIM KEEWPLFM L++PLPACFR+HSDCSFK+QVKKQL+E L APM++DGKEVK V EL WY GGLAYRLGCDRRFIRKQP+LAEFH WLT LME+GNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQL+EM+SAP+ DG+VGLVVAND DRDRAYMLAHQCKRV+SPA+C+TWC AQ+LPNLGA GAE+GSDKG+FDRVLADVPCSGDGTLRKQP+IWRTWTVAGGL LHPLQLLI LRGAA+LK+
Sbjct: 57 YQAMGIMPKEEWPLFMNTLKEPLPACFRIHSDCSFKDQVKKQLLELLEAPMVIDGKEVKAVRELPWYAGGLAYRLGCDRRFIRKQPHLAEFHKWLTGLMESGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLMEMISAPSATXXXXXXXXXXXXXX---XXDGDVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKI 331
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: D8LLJ3_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ3_ECTSI) HSP 1 Score: 285 bits (729), Expect = 2.230e-87 Identity = 142/180 (78.89%), Postives = 154/180 (85.56%), Query Frame = 1
Query: 295 METGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
ME+GNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQL+EMVSAP+ DGEVGLVVAND DRDRAYMLAHQCKRV+SPA+C+TWC AQ+LPNLGA GAE+GSDKG+FDRVLADVPCSGDGTLRKQP+IWRTWTVAGGL LHPLQLLI LRGAA+LK+
Sbjct: 1 MESGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLMEMVSAPSXXXXXXXXXXXXXXXP-----DGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKI 175
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: A0A835ZA58_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA58_9STRA) HSP 1 Score: 254 bits (649), Expect = 4.170e-80 Identity = 130/211 (61.61%), Postives = 150/211 (71.09%), Query Frame = 1
Query: 205 GGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGS-DKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
G LAY+LG DRR IRK P L H WL E+G ITRQE VSM+PPLFLDV P H++LDMCAAPGSKTAQL+EMV+APA + A + EG LV+AND +RDRAY+LAHQC+R +P +CVTWC AQ P LG KG+ DKG+FDRVLADVPCSGDGT RK P+IWR W+ G L LHPLQL IA RGAA+LKV
Sbjct: 20 GELAYKLGADRRQIRKTPQLKALHEWLLAHTESGAITRQEEVSMVPPLFLDVHPGHIILDMCAAPGSKTAQLLEMVTAPASTSTAGESPEG---------------LVIANDANRDRAYLLAHQCRRTAAPCLCVTWCAAQLFPTLGPDAGGKGTVDKGIFDRVLADVPCSGDGTARKAPNIWRMWSTHGPLTLHPLQLSIAARGAALLKV 215
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: A0A421F623_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F623_9STRA) HSP 1 Score: 256 bits (654), Expect = 1.880e-76 Identity = 133/279 (47.67%), Postives = 179/279 (64.16%), Query Frame = 1
Query: 1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAP-MMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
++A GI+ + +W F K L PLP FR++S C F +++++ + + ++VD + V+P+ ++WYP + +RR +RK P L F TWL +L +G+ITRQEAVSM+PPL L V+P H VLDMCAAPGSKT+QL+E + ++ +A + G+VVAND D RAYML HQ KR+ SPA+ VT AQ +P LG G E SD G+FDR+L D PCSGDGTLRK P IW+ W+ G+ALHPLQL IA RGAA+LKV
Sbjct: 52 YKAQGIVPEADWEAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISNMQWYPDNRGFTWSVERRRVRKLPILKAFQTWLVELSNSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLH-----------------SQELATGNTPTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGEEGTE--SD-GVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 310
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: A0A484DRY9_BRELC (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRY9_BRELC) HSP 1 Score: 255 bits (651), Expect = 3.240e-76 Identity = 134/279 (48.03%), Postives = 173/279 (62.01%), Query Frame = 1
Query: 1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAPMMV-DGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
++A IM +WP F K L PLP FR++S C F E++++ + + +V + + V+P+ + WYP + +RR +RK P L EF TWL L +G+ITRQEAVSM+PPL L V+ H VLDMCAAPGSKT+QL+E + ++ +A GLVVAND D RAYML HQ KR+ SPA+ VT AQ LP LG G E G+FDR+L DVPCSGDGTLRK P IW++W+ G+ LHPLQL IA RGAA+LKV
Sbjct: 47 YKAQNIMSDSDWPAFKKALATPLPTTFRINSSCLFAERIREHIDQDFKFDTLVLENEPVEPIRAMSWYPDNRGFTWSVERRRVRKLPILKEFQTWLVGLSTSGSITRQEAVSMIPPLVLGVKSHHKVLDMCAAPGSKTSQLLESLH-----------------SQELATGQTPTGLVVANDVDLKRAYMLVHQSKRISSPALVVTCHEAQNLPFLGQEGTEH---DGVFDRILCDVPCSGDGTLRKNPLIWKSWSAKNGIVLHPLQLQIAKRGAALLKV 305
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: H3HAP2_PHYRM (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAP2_PHYRM) HSP 1 Score: 254 bits (650), Expect = 3.370e-76 Identity = 132/279 (47.31%), Postives = 175/279 (62.72%), Query Frame = 1
Query: 1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAP-MMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
++A I+ +W F K L PLP FR++S C F +++++ + + ++VD + V+P+ + WYP + +RR +RK P L EF +WL +L +G+ITRQEAVSM+PPL L V+P H VLDMCAAPGSKT+QL+E + ++ A G+VVAND D RAYML HQ KR+ SPA+ VT AQ +P LG G EK +G+FDRVL D PCSGDGTLRK P IW+ W+ G+ALHPLQL IA RGAA+LKV
Sbjct: 46 YKAQNIVPDADWDAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISPMPWYPDSRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLH-----------------SQEFATGKTPTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGKDGTEK---EGVFDRVLCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 304
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: M4B481_HYAAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B481_HYAAE) HSP 1 Score: 253 bits (646), Expect = 2.910e-75 Identity = 130/279 (46.59%), Postives = 177/279 (63.44%), Query Frame = 1
Query: 1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAP-MMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
++A I+ +W F K L PLP FR++S C F E++++ + + ++VD ++V+P+ + WYP + +RR +RK P L +F WL +L ++G+ITRQEAVSM+PPL L V+P H VLDMCAAPGSKT+QL+E + ++ +A G+VVAND D RAYML HQ KR+ SPA+ VT AQ P LG G E KG+FDR+L DVPCSGDGT+RK P IW++W+ G+ALHPLQL IA RGA++LKV
Sbjct: 51 YKAQDIVADVDWDAFKKALATPLPTTFRINSSCPFAERIREHVEQDFKFDGLVVDDEQVEPISLMSWYPDNRGFTWSVERRRVRKLPILKKFQAWLVELSDSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLH-----------------SQELATGKTPTGVVVANDVDLKRAYMLVHQSKRINSPALLVTCHEAQHFPFLGKDGTES---KGVFDRILCDVPCSGDGTIRKNPLIWKSWSAKNGIALHPLQLQIAKRGASLLKV 309
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: G4ZPP8_PHYSP (SAM_MT_RSMB_NOP domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZPP8_PHYSP) HSP 1 Score: 249 bits (636), Expect = 6.360e-75 Identity = 132/279 (47.31%), Postives = 174/279 (62.37%), Query Frame = 1
Query: 1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAP-MMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
++A IM +W F K L PLP FR++S C F +++++ + + ++VD + V+P+ + WYP + +RR +RK P L EF +WL +L +G+ITRQEAVSM+PPL L V+ H VLDMCAAPGSKT+QL+E + + E G T G+VVAND D RAYML HQ KR+ SPA+ VT AQ +P LG G E+ G+FDR+L D PCSGDGTLRK P IW+ W+ G+ALHPLQL IA RGAA+LKV
Sbjct: 50 YKAQNIMADADWAAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISPMPWYPDNRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVESHHKVLDMCAAPGSKTSQLLESLHSKE-------FETGKTPT----------GVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGEDGTER---DGVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 308
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: K3WGW8_GLOUD (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGW8_GLOUD) HSP 1 Score: 252 bits (643), Expect = 8.520e-75 Identity = 137/282 (48.58%), Postives = 179/282 (63.48%), Query Frame = 1
Query: 1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAPMMV--DGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEV--GLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
+QA G++ + EW FMK L PLP FR+++ C F E++++++ +V DG+EV P+ + WYP ++ +RR +RK P LAEF WL +L +G TRQEAVSM+PPL LDVQP H VLDMCAAPGSKT+QL+E + A +E V GE G+V+AND D RAYML HQ KR+ SPA+ VT AQ +P +G EK S+ G FDR+L D PCSGDGTLRK P IW+ W G+ALHPLQ+ I+ RGA++LKV
Sbjct: 52 YQAQGVVPEAEWEQFMKFLATPLPTTFRINNSCPFAERIRERIATDFKYEGLVLDDGEEVAPIAPMPWYPNQKGFQWSVERRKVRKLPILAEFQKWLVELTLSGATTRQEAVSMIPPLILDVQPHHKVLDMCAAPGSKTSQLLESLHA----------QE---------HVTGETPTGMVMANDIDIKRAYMLVHQSKRIGSPALIVTCHEAQHIPYVGE--PEKKSE-GFFDRILCDAPCSGDGTLRKNPIIWKQWDARNGIALHPLQVEISKRGASLLKV 311
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: W2QK78_PHYPN (SAM_MT_RSMB_NOP domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2QK78_PHYPN) HSP 1 Score: 249 bits (636), Expect = 1.090e-74 Identity = 129/279 (46.24%), Postives = 174/279 (62.37%), Query Frame = 1
Query: 1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAP-MMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
++A I+ +W F K L PLP FR++S C F +++++ + + ++VD + V+P+ + WYP + +RR +RK P L EF +WL +L +G+ITRQEAVSM+PPL L V+P H VLDMCAAPGSKT+QL+E + ++ +A G+VVAND D RAYML HQ KR+ SPA+ VT AQ +P LG G E +G+FDR+L D PCSGDGTLRK P IW+ W+ G+ALHPLQL IA RGA +LKV
Sbjct: 52 YKAQNIVADADWDAFKKALGTPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISCMPWYPDNRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVEPYHKVLDMCAAPGSKTSQLLESLH-----------------SQELATGKTPTGVVVANDVDLKRAYMLVHQSKRINSPALLVTCHEAQNIPFLGKDGTES---EGVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGATLLKV 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56034.13037.1 >prot_H-elongata_contig56034.13037.1 ID=prot_H-elongata_contig56034.13037.1|Name=mRNA_H-elongata_contig56034.13037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp MGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAPMMVback to top mRNA from alignment at H-elongata_contig56034:42..2459- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56034.13037.1 ID=mRNA_H-elongata_contig56034.13037.1|Name=mRNA_H-elongata_contig56034.13037.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2418bp|location=Sequence derived from alignment at H-elongata_contig56034:42..2459- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56034:42..2459- >mRNA_H-elongata_contig56034.13037.1 ID=mRNA_H-elongata_contig56034.13037.1|Name=mRNA_H-elongata_contig56034.13037.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig56034:42..2459- (Himanthalia elongata Himel1 dioecious)back to top |