mRNA_H-elongata_contig55751.13005.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55751.13005.1
Unique NamemRNA_H-elongata_contig55751.13005.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55751.13005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55751contigH-elongata_contig55751:608..1643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size445
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.7683609-CDS-H-elongata_contig55751:609..9431622930908.7683609-CDS-H-elongata_contig55751:609..943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55751 610..943 -
1691679620.3959982-CDS-H-elongata_contig55751:609..9431691679620.3959982-CDS-H-elongata_contig55751:609..943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55751 610..943 -
1622930908.7828298-CDS-H-elongata_contig55751:1536..16431622930908.7828298-CDS-H-elongata_contig55751:1536..1643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55751 1537..1643 -
1691679620.411302-CDS-H-elongata_contig55751:1536..16431691679620.411302-CDS-H-elongata_contig55751:1536..1643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55751 1537..1643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55751.13005.1prot_H-elongata_contig55751.13005.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55751 610..1643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55751.13005.1

>prot_H-elongata_contig55751.13005.1 ID=prot_H-elongata_contig55751.13005.1|Name=mRNA_H-elongata_contig55751.13005.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
GLLADVGDATHAGEEVVSLALLRTCLSNGYGVHIPRMFQDLLADLGQAFI
TAAAAASQNDSDVEFLSARPYSGAKVTGEEGHTVNTVREKSCACVEEGSG
QTYDAATAVGGRRRQGKEKLSFTAPVFHVTEYDVTKGQYPESWERHA
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mRNA from alignment at H-elongata_contig55751:608..1643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55751.13005.1 ID=mRNA_H-elongata_contig55751.13005.1|Name=mRNA_H-elongata_contig55751.13005.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1036bp|location=Sequence derived from alignment at H-elongata_contig55751:608..1643- (Himanthalia elongata Himel1 dioecious)
GGGCTCCTAGCGGACGTTGGCGATGCCACTCATGCTGGAGAAGAAGTTGT
ATCTTTGGCGCTCCTCCGCACTTGCTTGAGTAACGGCTACGGTGTACACA
TCCCAAGGTTAGTTTGGTTTCATCCACAAAGGATCACTTGTTTAGCACCT
CAAGCGATGACATATTAGCATCATCGTTGTGTTCCGGGGTTTCTCCGTTA
CGCGTCCACCTAGCGCTGCGCCAATGGCGTCTCCAAAGAGACTGTCAGAA
TATATGTGAATTTTGTGTAAATTCAAGTTTCCGCCATCATAGCATGGATT
GATGGTTTTGCGCTGTGTTGTATTCCGTACTGTAGACGATCAGTGACGGT
ATGTGGCGCGCGGTAACCCAATACAGTACGGAAGAGGATCCCCGCTAGAT
AATCTCGGTGTTTACCCAGACAGAAAAGGGCAGGTGCGCCAGCGGCGCGG
ATTTAGAGTGATCTCGCCAAAATATTATTACAAGTAGACGAAGCTTACAA
AAAGCCGGTGTTGGGGAGGGGGAAGGTGTGGGGCCACCCATCCCCGGAAA
TAAAGGCCTCGAGAGCGAGCAGCATAGACTCAAGATTTTTTAGAATCCAG
TAGAAACATGTTCCTCTGCCGTTCTGCACATATCTGTTTCCACCGCGGTA
AATGACAAAAAAGAAAACGAACTGCGCTCGAACCACTCTTGAACTGCAAG
AATGTTTCAGGACCTTCTGGCCGACTTGGGCCAAGCGTTCATCACTGCTG
CAGCTGCAGCGAGCCAAAACGACTCGGACGTCGAGTTCCTTTCTGCGCGG
CCCTACTCGGGGGCAAAGGTCACCGGCGAAGAAGGCCATACCGTAAACAC
CGTCAGAGAAAAGTCGTGCGCTTGCGTTGAAGAAGGTTCTGGACAAACAT
ACGACGCAGCGACTGCGGTCGGTGGGCGAAGGAGACAAGGCAAAGAGAAG
CTTTCCTTTACCGCGCCGGTCTTCCACGTGACAGAGTATGACGTCACCAA
GGGACAGTACCCAGAGTCATGGGAGCGTCATGCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig55751:608..1643-

>mRNA_H-elongata_contig55751.13005.1 ID=mRNA_H-elongata_contig55751.13005.1|Name=mRNA_H-elongata_contig55751.13005.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig55751:608..1643- (Himanthalia elongata Himel1 dioecious)
GGGCTCCTAGCGGACGTTGGCGATGCCACTCATGCTGGAGAAGAAGTTGT
ATCTTTGGCGCTCCTCCGCACTTGCTTGAGTAACGGCTACGGTGTACACA
TCCCAAGGGGCTCCTAGCGGACGTTGGCGATGCCACTCATGCTGGAGAAG
AAGTTGTATCTTTGGCGCTCCTCCGCACTTGCTTGAGTAACGGCTACGGT
GTACACATCCCAAGAATGTTTCAGGACCTTCTGGCCGACTTGGGCCAAGC
GTTCATCACTGCTGCAGCTGCAGCGAGCCAAAACGACTCGGACGTCGAGT
TCCTTTCTGCGCGGCCCTACTCGGGGGCAAAGGTCACCGGCGAAGAAGGC
CATACCGTAAACACCGTCAGAGAAAAGTCGTGCGCTTGCGTTGAAGAAGG
TTCTGGACAAACATACGACGCAGCGACTGCGGTCGGTGGGCGAAGGAGAC
AAGGCAAAGAGAAGCTTTCCTTTACCGCGCCGGTCTTCCACGTGACAGAG
TATGACGTCACCAAGGGACAGTACCCAGAGTCATGGGAGCGTCATGCGAA
TGTTTCAGGACCTTCTGGCCGACTTGGGCCAAGCGTTCATCACTGCTGCA
GCTGCAGCGAGCCAAAACGACTCGGACGTCGAGTTCCTTTCTGCGCGGCC
CTACTCGGGGGCAAAGGTCACCGGCGAAGAAGGCCATACCGTAAACACCG
TCAGAGAAAAGTCGTGCGCTTGCGTTGAAGAAGGTTCTGGACAAACATAC
GACGCAGCGACTGCGGTCGGTGGGCGAAGGAGACAAGGCAAAGAGAAGCT
TTCCTTTACCGCGCCGGTCTTCCACGTGACAGAGTATGACGTCACCAAGG
GACAGTACCCAGAGTCATGGGAGCGTCATGCG
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