mRNA_H-elongata_contig55750.13004.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55750.13004.1
Unique NamemRNA_H-elongata_contig55750.13004.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55750.13004.1 vs. uniprot
Match: D8LDZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ5_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 2.550e-100
Identity = 181/306 (59.15%), Postives = 205/306 (66.99%), Query Frame = 1 
Query:    1 FDASRYSGLDDNSSACVFASEVSVLLEKERVAQGE-PVSFSFSLILPEKLTPTFRGVGVRYAYAVTVRVKRALPXXXXXXXXXXXXXXXXXXXXXXG-GFSTTDLHVAFTVLSEGQAAAAAAIHGVETVGGEGGWDSVAFAEIEIERLSRETFELEAEKARAGGLISGTRAVTWNMQGRMLDDGAGIVATSALXXXXXXXXXXXXXXXXXXXXXXXXMVFSIRSGDHHIASFVLHKPEFCAGDIVLGNFDFSSASVRCLQVCACLEISEEN--AFVGVFSPSTPGRRKSSGGGKPPCHKRVVDSFK 906
            F   RYSGL D+ SACVFASEV+VLL+KERV  G  P SF FS +LPE LTPTFRGVGVRYAYAVTVRV+RALP                        GFSTTD+HV+FTVLS G  A        + +G  GGW  VAFAE+E ER S + FE+EA++A+AGGL+SGTRAVTWNMQGRM+DDG G +  SAL           XXXXX        MV+SIRSGDH I SF+LHK EFCAGDIVLGNFDFS AS RCLQVCACLE+ EEN  AF G  + S PG+ K S   +  CHKRVVDS K
Sbjct:  117 FPVPRYSGLTDDRSACVFASEVAVLLKKERVDGGRHPASFRFSFVLPENLTPTFRGVGVRYAYAVTVRVRRALPPPPAAGRLLGLVRRRPAAGSSASAGFSTTDVHVSFTVLSRGPPAFDGVGGTADGIGDGGGWGRVAFAELEAERQSADAFEVEADRAKAGGLVSGTRAVTWNMQGRMIDDGFGSIGASALLLGEGDGGAEDXXXXX--------MVYSIRSGDHRIGSFILHKAEFCAGDIVLGNFDFSGASTRCLQVCACLEVCEENQNAFTGDSASSAPGKPKPSPNARNTCHKRVVDSCK 414
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BLAST of mRNA_H-elongata_contig55750.13004.1 vs. uniprot
Match: A0A6H5KF53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF53_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.440e-44
Identity = 94/177 (53.11%), Postives = 113/177 (63.84%), Query Frame = 1 
Query:    1 FDASRYSGLDDNSSACVFASEVSVLLEKERVAQGE-PVSFSFSLILPEKLTPTFRGVGVRYAYAVTVRVKRALPXXXXXXXXXXXXXXXXXXXXXXG-GFSTTDLHVAFTVLSEGQAAAAAAIHGVETVGGEGGWDSVAFAEIEIERLSRETFELEAEKARAGGLISGTRAVTWNMQ 525
            F   RYSGL D+ SACVFASEV+VLL++ERV  G  P SF FS +LPE LTPTFRGVGVRYAYAVTVRV+R+LP                        GFSTTD+HV+FT  ++G             +G    W  VAF E+E ER S + FE+EA++A+ GGL+SGTRAVTWNMQ
Sbjct:  114 FPIPRYSGLTDDRSACVFASEVAVLLKQERVDGGRHPTSFRFSFVLPENLTPTFRGVGVRYAYAVTVRVRRSLPPPPAAGRLLGLVRRRPAAGSSASAGFSTTDVHVSFTGTADG-------------IGDGVSWGRVAFTELEAERQSGDAFEMEADRAKGGGLVSGTRAVTWNMQ 277
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BLAST of mRNA_H-elongata_contig55750.13004.1 vs. uniprot
Match: A0A6H5L4W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W5_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.020e-34
Identity = 84/146 (57.53%), Postives = 92/146 (63.01%), Query Frame = 1 
Query:  475 RAGGLISGTRAVTWNMQGRMLDDGAGIVATSALXXXXXXXXXXXXXXXXXXXXXXXXMVFSIRSGDHHIASFVLHKPEFCAGDIVLGNFDFSSASVRCLQVCACLEISEEN--AFVGVFSPSTPGRRKSSGGGKPPCHKRVVDSFK 906
            RAG   S  R     ++GRM+DDG G +  SAL          XXXXXX        MVFSIRSGDH I SF+LHK EFCAGDIVLGNFDFS AS RCLQVCACLE+ EEN  AF G  + S PGR K     +  CHKRVVDS K
Sbjct:   13 RAGAGRSPPRHDIRKIKGRMIDDGFGSMGASALLLGEGDGGAGXXXXXX--------MVFSIRSGDHRIGSFILHKAEFCAGDIVLGNFDFSGASTRCLQVCACLEVCEENQNAFPGDAASSAPGRPKPPPDVRSTCHKRVVDSCK 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55750.13004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDZ5_ECTSI2.550e-10059.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF53_9PHAE1.440e-4453.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4W5_9PHAE2.020e-3457.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55750contigH-elongata_contig55750:877..3541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue7.4e-84
Seed eggNOG ortholog2880.D8LDZ5
Preferred nameRGP1
KEGG koko:K20477
GOsGO:0000139,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006810,GO:0008150,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0010605,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019222,GO:0019899,GO:0023051,GO:0023056,GO:0031090,GO:0031267,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031984,GO:0032006,GO:0032008,GO:0032045,GO:0032268,GO:0032269,GO:0032588,GO:0032991,GO:0034066,GO:0042147,GO:0042176,GO:0042177,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:1902531,GO:1902533,GO:1903362,GO:1903363,GO:1903939,GO:1904515
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG4469@1,KOG4469@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionReduced growth phenotype protein 1
Ec32 orthologEc-23_003190.1
Exons6
Model size921
Cds size921
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55750.13004.1prot_H-elongata_contig55750.13004.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55750 877..3541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.6237795-CDS-H-elongata_contig55750:876..10231622930908.6237795-CDS-H-elongata_contig55750:876..1023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 877..1023 -
1691679620.321715-CDS-H-elongata_contig55750:876..10231691679620.321715-CDS-H-elongata_contig55750:876..1023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 877..1023 -
1622930908.637355-CDS-H-elongata_contig55750:1355..16041622930908.637355-CDS-H-elongata_contig55750:1355..1604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 1356..1604 -
1691679620.3391027-CDS-H-elongata_contig55750:1355..16041691679620.3391027-CDS-H-elongata_contig55750:1355..1604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 1356..1604 -
1622930908.6536448-CDS-H-elongata_contig55750:2258..23401622930908.6536448-CDS-H-elongata_contig55750:2258..2340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 2259..2340 -
1691679620.3490403-CDS-H-elongata_contig55750:2258..23401691679620.3490403-CDS-H-elongata_contig55750:2258..2340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 2259..2340 -
1622930908.6788046-CDS-H-elongata_contig55750:2710..28081622930908.6788046-CDS-H-elongata_contig55750:2710..2808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 2711..2808 -
1691679620.3597777-CDS-H-elongata_contig55750:2710..28081691679620.3597777-CDS-H-elongata_contig55750:2710..2808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 2711..2808 -
1622930908.694892-CDS-H-elongata_contig55750:2865..30481622930908.694892-CDS-H-elongata_contig55750:2865..3048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 2866..3048 -
1691679620.371975-CDS-H-elongata_contig55750:2865..30481691679620.371975-CDS-H-elongata_contig55750:2865..3048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 2866..3048 -
1622930908.7151635-CDS-H-elongata_contig55750:3379..35411622930908.7151635-CDS-H-elongata_contig55750:3379..3541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 3380..3541 -
1691679620.3858957-CDS-H-elongata_contig55750:3379..35411691679620.3858957-CDS-H-elongata_contig55750:3379..3541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55750 3380..3541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55750.13004.1

>prot_H-elongata_contig55750.13004.1 ID=prot_H-elongata_contig55750.13004.1|Name=mRNA_H-elongata_contig55750.13004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=307bp
FDASRYSGLDDNSSACVFASEVSVLLEKERVAQGEPVSFSFSLILPEKLT
PTFRGVGVRYAYAVTVRVKRALPPPPPSSTGLLGLMRRRPPPSASGGFST
TDLHVAFTVLSEGQAAAAAAIHGVETVGGEGGWDSVAFAEIEIERLSRET
FELEAEKARAGGLISGTRAVTWNMQGRMLDDGAGIVATSALLGGGGGPGD
LEEEEYGILPPPPPPMVFSIRSGDHHIASFVLHKPEFCAGDIVLGNFDFS
SASVRCLQVCACLEISEENAFVGVFSPSTPGRRKSSGGGKPPCHKRVVDS
FKVCNI*
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mRNA from alignment at H-elongata_contig55750:877..3541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55750.13004.1 ID=mRNA_H-elongata_contig55750.13004.1|Name=mRNA_H-elongata_contig55750.13004.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2665bp|location=Sequence derived from alignment at H-elongata_contig55750:877..3541- (Himanthalia elongata Himel1 dioecious)
TTCGATGCTAGCAGGTACAGTGGCCTGGACGACAACAGCTCGGCCTGCGT
GTTCGCGTCCGAGGTGTCCGTTCTGCTCGAGAAGGAGCGCGTGGCCCAAG
GAGAACCTGTGTCGTTTTCGTTTAGCCTCATACTCCCGGAGAAGCTCACC
CCAACATTCCGAGTGAGCTCCTGAGTGAATAGTTGGAAGGAGGTGCTCTA
GAGAGGGGACCGCATACAGGTCGACGACAGCGCCTTTTTCGTGTACCGTC
GATCCTCGAGGCATTTTGACCTGGAGCCCCCCCGTCCCCGTCCCCGTCCC
TCCCGGAAAACATGGCGCGTTGTGCTAAAAGCTTTTAAAAGCTGCGCTGT
TTACGCATAGACAATATTTTACGCCTTGCGCTGACGACCTCATCGATTCC
AACGGCCCAAGCCTCCCCCCCTTTCTCACCCCTCTCTCATTTTGCATCTT
CTCTCTCACCCCTTTCCTTGACGGCATGCCTCGAAATGAGAAGGGCGTTG
GAGTCCGTTATGCCTATGCGGTGACGGTGAGAGTCAAGCGAGCGCTGCCA
CCGCCGCCACCCTCATCGACGGGCCTCCTCGGTCTCATGCGGAGGCGACC
TCCCCCCTCCGCCTCCGGAGGGTTTTCCACGACAGATCTGCACGTGGCGT
TTACGGTGCTGTCCGAGGGGCAAGCAGTAGCTTCTCCTGCTTCGATGGGA
TCAGGGGCGCGATTCGGGGATGACGCCCACCAGGCAGCCGCCGCCGCCAT
CCACGGTGTAGAAACCGTTGGGGGCGAAGGCGGGTGGGACAGTGTCGCGT
TCGCGGAGATTGAAATTGAGCGCCTGTCAAGGTGGAGAAATATATGGAGT
AGAGGGGAAAGAGAAAGATATTATATACTGAAGTATATAGGATAAGGATT
AAACGTTTAAGGCCTCTGTCTTCCATGCCATAGAAGCTGAAAAACCTCTC
TTATGACGATGGCGTTTACAATCGTTGCGATGCATGTGTGTGTGTGTGTG
TGTTTGGACTATTAGTCTAGTCTCTTTCAATGTCCTCGTGAATCGATCTC
CCCCCCCCCCCCCCTCTGGAGAGATGACATCATGGCAATCACGTCATGAT
TATTTCTAGGCTTGCGTTTTTATCTTCCTAGTGCCGTAAACGGGCAAGGC
ACCCTTGGCCAAGGCACCATATCACACTTTTCTCTAATCTGGACCACTCA
GGGAGACATTCGAATTGGAGGCGGAGAAGGCGAGGGCCGGAGGGTTAATT
TCAGGAACGCGGGCGGTGACATGGAACATGCAGGTGATGGATACAGGGAG
GCGTTTATCATACGGGAGTGGAGTGGAAGTGCGGGGTTACTCCCCATGTT
TTAAATTGTTTTTGCCCTTGATTCCGATAGCATGGTAGCAGCCATTCTCA
CTCGCCCCTCGTGGGAATTACAAGTATCTCGACTCTCTTTTCCTATATAA
AAATGACACTTTTATCAACCCGTGAGCTCGACGCAGTACATTCAGTAGCC
GCGGGAGCCATCGAGAGACATTATATCGCGACCAAGAGCTGCGGCGCCGA
AATACCTTTCATACGCGCGATATATGTACCCCGTTCATTGTCTCCCTAGC
CCGGACATGAGAATTCCGCCTTCCGGCACAGGCGTAGCTAAAGGGGGAGA
GAACTGGAAGCGTCGGTGCTCACCGAACGCTCCTTTATTATGCGGAAGCA
CGGCTCTAGCAGATAGGCTGGCCGCTGTATTTTTGTGCTCGATGTAGCAT
TTGAGAAACCTGGAAAAGGGACAAATCACAATCAAGATTTTAACGCCTTT
TATATAGACTTTTCTGCCTTTGGTTCGTGCAGCGGATGTTCTAGACAAAA
AAGATCCGCGGGGGCTTTTGACGGCGAGCATAATTCGTCCTCGGATCCTA
TGCGATGCTCGATACAAATATATTCTAATCCGAAAAGGGCCGCATGCTGG
ACGACGGCGCTGGCATCGTCGCGACATCGGCGTTGCTAGGTGGAGGGGGG
GGACCTGGGGACCTCGAAGAAGAAGAGTACGGCATATTGCCACCCCCGCC
TCCTCCAATGGTGTTCTCTATCCGCAGCGGCGACCACCACATCGCCAGCT
TCGTCCTACACAAGCCGGAATTTTGCGCCGGCGATATCGTCCTGGGTAAC
TTCGACTTCTCCTCCGCTTCCGTGCGGTGTCTGCAGGTGCAACAAATGAG
GGACGTTATTTCCCCCAGGACTGAGAGGCGGGGTGTGGGGGGGGGGCAAA
CGCCGAACATGCCTGTTCGCTGCCGGTTTGCTTTTTGAGATACATGGCGC
ACGCTTGAGTCGGATGTGATTCGGAACTCGTCCTCATTTTTGCTCGAAAT
ATTATTTTTAGGATCACTGTGCTCCTTCAGCATTCTGCGTGTGGTTTCTT
CCCTGAGGGTGCGCCCCCCCCCACCTCAACCCCAGGTCATACCGCCTCAT
TTTCTACTCGACACCCTACCGGTGAACACGATCCTAACGACCACTGCCCG
GTTGACCATCGACGTCAGGTGTGTGCCTGCTTGGAGATATCAGAGGAGAA
TGCCTTCGTCGGGGTTTTCTCCCCGTCAACCCCGGGTCGCCGGAAGTCAT
CCGGTGGCGGTAAACCCCCTTGCCACAAACGGGTGGTCGATTCCTTCAAG
GTATGTAATATATGA
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Coding sequence (CDS) from alignment at H-elongata_contig55750:877..3541-

>mRNA_H-elongata_contig55750.13004.1 ID=mRNA_H-elongata_contig55750.13004.1|Name=mRNA_H-elongata_contig55750.13004.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1842bp|location=Sequence derived from alignment at H-elongata_contig55750:877..3541- (Himanthalia elongata Himel1 dioecious)
TTCGATGCTAGCAGGTACAGTGGCCTGGACGACAACAGCTCGGCCTGCGT
GTTCGCGTCCGAGGTGTCCGTTCTGCTCGAGAAGGAGCGCGTGGCCCAAG
GAGAACCTGTGTCGTTTTCGTTTAGCCTCATACTCCCGGAGAAGCTCACC
CCAACATTCCGATTCGATGCTAGCAGGTACAGTGGCCTGGACGACAACAG
CTCGGCCTGCGTGTTCGCGTCCGAGGTGTCCGTTCTGCTCGAGAAGGAGC
GCGTGGCCCAAGGAGAACCTGTGTCGTTTTCGTTTAGCCTCATACTCCCG
GAGAAGCTCACCCCAACATTCCGAGGCGTTGGAGTCCGTTATGCCTATGC
GGTGACGGTGAGAGTCAAGCGAGCGCTGCCACCGCCGCCACCCTCATCGA
CGGGCCTCCTCGGTCTCATGCGGAGGCGACCTCCCCCCTCCGCCTCCGGA
GGGTTTTCCACGACAGATCTGCACGTGGCGTTTACGGTGCTGTCCGAGGG
GCAAGCAGGCGTTGGAGTCCGTTATGCCTATGCGGTGACGGTGAGAGTCA
AGCGAGCGCTGCCACCGCCGCCACCCTCATCGACGGGCCTCCTCGGTCTC
ATGCGGAGGCGACCTCCCCCCTCCGCCTCCGGAGGGTTTTCCACGACAGA
TCTGCACGTGGCGTTTACGGTGCTGTCCGAGGGGCAAGCAGCAGCCGCCG
CCGCCATCCACGGTGTAGAAACCGTTGGGGGCGAAGGCGGGTGGGACAGT
GTCGCGTTCGCGGAGATTGAAATTGAGCGCCTGTCAAGGCAGCCGCCGCC
GCCATCCACGGTGTAGAAACCGTTGGGGGCGAAGGCGGGTGGGACAGTGT
CGCGTTCGCGGAGATTGAAATTGAGCGCCTGTCAAGGGAGACATTCGAAT
TGGAGGCGGAGAAGGCGAGGGCCGGAGGGTTAATTTCAGGAACGCGGGCG
GTGACATGGAACATGCAGGGAGACATTCGAATTGGAGGCGGAGAAGGCGA
GGGCCGGAGGGTTAATTTCAGGAACGCGGGCGGTGACATGGAACATGCAG
GGCCGCATGCTGGACGACGGCGCTGGCATCGTCGCGACATCGGCGTTGCT
AGGTGGAGGGGGGGGACCTGGGGACCTCGAAGAAGAAGAGTACGGCATAT
TGCCACCCCCGCCTCCTCCAATGGTGTTCTCTATCCGCAGCGGCGACCAC
CACATCGCCAGCTTCGTCCTACACAAGCCGGAATTTTGCGCCGGCGATAT
CGTCCTGGGTAACTTCGACTTCTCCTCCGCTTCCGTGCGGTGTCTGCAGG
GCCGCATGCTGGACGACGGCGCTGGCATCGTCGCGACATCGGCGTTGCTA
GGTGGAGGGGGGGGACCTGGGGACCTCGAAGAAGAAGAGTACGGCATATT
GCCACCCCCGCCTCCTCCAATGGTGTTCTCTATCCGCAGCGGCGACCACC
ACATCGCCAGCTTCGTCCTACACAAGCCGGAATTTTGCGCCGGCGATATC
GTCCTGGGTAACTTCGACTTCTCCTCCGCTTCCGTGCGGTGTCTGCAGGT
GTGTGCCTGCTTGGAGATATCAGAGGAGAATGCCTTCGTCGGGGTTTTCT
CCCCGTCAACCCCGGGTCGCCGGAAGTCATCCGGTGGCGGTAAACCCCCT
TGCCACAAACGGGTGGTCGATTCCTTCAAGGTATGTAATATATGAGTGTG
TGCCTGCTTGGAGATATCAGAGGAGAATGCCTTCGTCGGGGTTTTCTCCC
CGTCAACCCCGGGTCGCCGGAAGTCATCCGGTGGCGGTAAACCCCCTTGC
CACAAACGGGTGGTCGATTCCTTCAAGGTATGTAATATATGA
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