mRNA_H-elongata_contig5528.12942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5528.12942.1
Unique NamemRNA_H-elongata_contig5528.12942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5528.12942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5528contigH-elongata_contig5528:6525..7743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size266
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5528.12942.1prot_H-elongata_contig5528.12942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5528 6526..7743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.5012112-CDS-H-elongata_contig5528:6525..65451622930901.5012112-CDS-H-elongata_contig5528:6525..6545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5528 6526..6545 -
1691679617.6276033-CDS-H-elongata_contig5528:6525..65451691679617.6276033-CDS-H-elongata_contig5528:6525..6545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5528 6526..6545 -
1622930901.520787-CDS-H-elongata_contig5528:6750..68251622930901.520787-CDS-H-elongata_contig5528:6750..6825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5528 6751..6825 -
1691679617.6363487-CDS-H-elongata_contig5528:6750..68251691679617.6363487-CDS-H-elongata_contig5528:6750..6825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5528 6751..6825 -
1622930901.535883-CDS-H-elongata_contig5528:7574..77431622930901.535883-CDS-H-elongata_contig5528:7574..7743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5528 7575..7743 -
1691679617.6462827-CDS-H-elongata_contig5528:7574..77431691679617.6462827-CDS-H-elongata_contig5528:7574..7743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5528 7575..7743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5528.12942.1

>prot_H-elongata_contig5528.12942.1 ID=prot_H-elongata_contig5528.12942.1|Name=mRNA_H-elongata_contig5528.12942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
FDVPVPPSTPKLMPTSTPTLAATSSTQSERDAGVQEWVVLTIVLGTGAII
GVLIFAYGCWCQRRQQRESGRQAGTAGDKAEDVGDETV
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mRNA from alignment at H-elongata_contig5528:6525..7743-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5528.12942.1 ID=mRNA_H-elongata_contig5528.12942.1|Name=mRNA_H-elongata_contig5528.12942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1219bp|location=Sequence derived from alignment at H-elongata_contig5528:6525..7743- (Himanthalia elongata Himel1 dioecious)
TTTGACGTTCCGGTGCCACCATCAACGCCGAAGTTGATGCCCACGTCGAC
TCCGACCTTGGCGGCAACAAGTTCGACTCAGAGCGAGAGAGACGCCGGAG
TTCAAGAGTGGGTGGTGCTCACGATTGTGCTCGGGACTGGAGCAATCATC
GGCGTTCTTATATTCGCGTGTGAGTCCCTTGCTTCGTTCGTAGATCTCGC
GGAGATTTCCATGGCGTGGTGCCGCGCACGTGGTGAAGTCACTCTTGTGG
TGGAGTGTTGGCGTTCTCCTACGGGGCAGTGGTGGTGAATGTGCATCTGG
TGTAGTCGTAAACATACGATACGGCGTCTCCTTCACAAACCTACACACAG
TCGCTGTGTATCGCTCGCCCCCCCCACCCCCGCTAGGAGAAATACGCATG
GAGAGGCGCTAGAACTAAATGAGAAGGTTGTTTTGTGGATGTACACACCG
CATCATCCCCTTTATTTTGGTATATTGATGTTGCTCTCAGCGATTTCGTG
CCTTTGTCCCCTGCGATTGTCAACCTAAACTATAAACGGAGAGCCGCTCT
TGCGCATCTCAACCTTACCCGCCCGTCAAGTCCAAAGATGTCTTATCAGG
ACTCTTACCGCAGCACCGACCGCGCGCGTCCCCCGACACCACGTGCCGGG
GGTGTTTTACCTTGACCCACGGTAAGCGCAGCGGCTCTCTCCGGGCGCAC
ATTCACCGGTTGGCGCCTGGTACGGCCTCGGGAAACCTTGTGGCTGGAGA
TGTTCGCGTGGTGTGCATCTCGCGCGTGTTTGTGCGAGTCTAGGGAGGCC
TCTCACCTCGGCTGTAGCTGCACCGCCTCGCCTTCCGCCCCGACTTAATT
ATTTCACCACCCCCGCCCCCCGTCTCGCCCTCTCCCTCTACGGTAACGCT
TCTGAAAAAAAAAAAAAGATGGCTGCTGGTGTCAACGCCGCCAACAACGT
GAGAGTGGAAGACAGGCGGGGACAGCCGGCGATAAGGCCGAAGGTGGGTA
TCCTGGGGCGGCGTTTTACTTACAGTAGCAGGACATTCCTTTCTTTTCAC
TTATCCTTAAATCGCTTACTGTGCTCTAGCGGCATCTTAATAGAGTGCAC
TGCTCACACTAATCGTGGTCGCGTTGTCTCCCCACTTTCTTATGAATCCG
CGCCCCCGCCCCGCTGTAACCCGCGGCCCAATCTCGGTCGCTCGAAAGAC
GTAGGTGATGAAACAGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig5528:6525..7743-

>mRNA_H-elongata_contig5528.12942.1 ID=mRNA_H-elongata_contig5528.12942.1|Name=mRNA_H-elongata_contig5528.12942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig5528:6525..7743- (Himanthalia elongata Himel1 dioecious)
TTTGACGTTCCGGTGCCACCATCAACGCCGAAGTTGATGCCCACGTCGAC
TCCGACCTTGGCGGCAACAAGTTCGACTCAGAGCGAGAGAGACGCCGGAG
TTCAAGAGTGGGTGGTGCTCACGATTGTGCTCGGGACTGGAGCAATCATC
GGCGTTCTTATATTCGCGTTTTGACGTTCCGGTGCCACCATCAACGCCGA
AGTTGATGCCCACGTCGACTCCGACCTTGGCGGCAACAAGTTCGACTCAG
AGCGAGAGAGACGCCGGAGTTCAAGAGTGGGTGGTGCTCACGATTGTGCT
CGGGACTGGAGCAATCATCGGCGTTCTTATATTCGCGTATGGCTGCTGGT
GTCAACGCCGCCAACAACGTGAGAGTGGAAGACAGGCGGGGACAGCCGGC
GATAAGGCCGAAGATGGCTGCTGGTGTCAACGCCGCCAACAACGTGAGAG
TGGAAGACAGGCGGGGACAGCCGGCGATAAGGCCGAAGACGTAGGTGATG
AAACAGTCACGTAGGTGATGAAACAGTC
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