mRNA_H-elongata_contig54940.12892.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54940.12892.1
Unique NamemRNA_H-elongata_contig54940.12892.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.970e-15
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   10 IVLEIADGYCDDENNNARCGWDGGDCCECTCISSGFTCGLTGYDCQDPDA 159
            I + + DG+CD ENNNA C WDGGDCCECTC+ S + CG+ G+ C DP A
Sbjct: 1973 IGVYVTDGWCDLENNNAECNWDGGDCCECTCVDSQYECGIQGFSCLDPSA 2022
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BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Match: A0A2E8RYL9_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E8RYL9_9DELT)

HSP 1 Score: 74.3 bits (181), Expect = 3.250e-14
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   22 IADGYCDDENNNARCGWDGGDCCECTCISSGFTCGLTGYDCQDPDA 159
            + DG+CD  NN+A C WDGGDCCE TC+S  + CG+ GYDC+DP+A
Sbjct:  692 VGDGWCDPGNNSASCDWDGGDCCETTCVSEEYPCGVEGYDCEDPEA 737
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BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.880e-13
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 CNGIVLEIADGYCDDENNNARCGWDGGDCCECTCISSGFTCGLTGYDCQDPDA 159
            C G ++ +ADG CD  NNN  CG+DGGDCC CTC+   + CG+ G+ C DP A
Sbjct:  177 CGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGIRGFACIDPSA 229
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BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.380e-13
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 CNGIVLEIADGYCDDENNNARCGWDGGDCCECTC---ISSGFTCGLT--GYDCQDPD 156
            C G +  I DGYCD++NN A CG+DGGDCC CTC         CGL   GYDC+DPD
Sbjct:  162 CGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCGMDAEVDHECGLLNDGYDCRDPD 218
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BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 6.440e-13
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 CNGIVLEIADGYCDDENNNARCGWDGGDCCECTC---ISSGFTCGLTG--YDCQDPD 156
            C G +  I DGYCD++NN A CG+DGGDCC CTC         CGL G  YDC+DPD
Sbjct:  160 CGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCGVDADVEHECGLLGDGYDCRDPD 216
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BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 7.370e-13
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    7 GIVLEIADGYCDDENNNARCGWDGGDCCECTCISSGFTCGLTGYDCQDPDA 159
            G V  I DG+C DENNN  C +DGGDCCECTC+ + + CG   + C DP A
Sbjct:   69 GYVASIGDGFCSDENNNEVCDYDGGDCCECTCVDAFYPCGYVAFACIDPSA 119
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BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Match: A0A7S1TXY0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXY0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.890e-12
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 CNGIVLEI--ADGYCDDENNNARCGWDGGDCCECTCIS-SGFTCGLTGYDCQDP 153
            C G + E   ADGYCD E N   CGWDGGDCCE TC+S S FTCG+ GY+C +P
Sbjct:  487 CVGGLFETYTADGYCDPEMNTDACGWDGGDCCEQTCVSGSPFTCGVNGYNCVNP 540
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BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.510e-12
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 CNGIVLEIADGYCDDENNNARCGWDGGDCCECTCISSGF-TCGLTGYDCQDPDA 159
            C G +  I DG CD  NNN  CGWDGGDCC CTC  S + +C     DCQDP+A
Sbjct:  223 CEGYIYMIGDGSCDYYNNNEECGWDGGDCCSCTCEGSYYYSCSSYSMDCQDPNA 276
[Close]
BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 8.970e-12
Identity = 33/59 (55.93%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:    1 CNGIVLEIADGYCDDENNNARCGWDGGDCCECTCISSG-----FTCGLTG--YDCQDPD 156
            C G    I DGYCD + NNA CGWDGGDCC CTC S         CG  G  YDC DPD
Sbjct:   67 CLGYTNHIKDGYCDTDLNNAECGWDGGDCCACTCGSDSDEELAHPCGQLGDGYDCLDPD 125
[Close]
BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Match: A0A8J2SY22_9STRA (Hypothetical protein n=5 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SY22_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.230e-11
Identity = 32/53 (60.38%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 CNGIVLEIADGYCDDENNNARCGWDGGDCCECTCISS-GFTCGLTGYDCQDPD 156
            C G    I DG CD  NNNA C +DGGDCCE TC+SS  +TCG   YDC DPD
Sbjct:  926 CAGTPNWIGDGMCDSSNNNAACSYDGGDCCEATCVSSTSYTCG--NYDCVDPD 976
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54940.12892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG7_ECTSI1.970e-1560.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2E8RYL9_9DELT3.250e-1460.87Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A6H5JTT4_9PHAE2.880e-1352.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP4_9PHAE5.380e-1356.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX76_ECTSI6.440e-1356.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE7.370e-1354.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1TXY0_9STRA1.890e-1261.11Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A6H5J6K0_9PHAE3.510e-1255.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX77_ECTSI8.970e-1255.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2SY22_9STRA1.230e-1160.38Hypothetical protein n=5 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54940contigH-elongata_contig54940:2879..3037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue5.8e-13
Seed eggNOG ortholog2880.D7FHG7
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930895.171036-CDS-H-elongata_contig54940:2878..30371622930895.171036-CDS-H-elongata_contig54940:2878..3037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54940 2879..3037 -
1691679615.333653-CDS-H-elongata_contig54940:2878..30371691679615.333653-CDS-H-elongata_contig54940:2878..3037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54940 2879..3037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54940.12892.1prot_H-elongata_contig54940.12892.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54940 2879..3037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54940.12892.1

>prot_H-elongata_contig54940.12892.1 ID=prot_H-elongata_contig54940.12892.1|Name=mRNA_H-elongata_contig54940.12892.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
CNGIVLEIADGYCDDENNNARCGWDGGDCCECTCISSGFTCGLTGYDCQD
PDA
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mRNA from alignment at H-elongata_contig54940:2879..3037-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54940.12892.1 ID=mRNA_H-elongata_contig54940.12892.1|Name=mRNA_H-elongata_contig54940.12892.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig54940:2879..3037- (Himanthalia elongata Himel1 dioecious)
TGCAATGGAATAGTGTTAGAAATCGCCGATGGTTATTGCGATGATGAGAA
CAACAATGCTAGATGCGGTTGGGATGGCGGAGATTGCTGTGAGTGCACAT
GTATTTCTTCTGGCTTTACATGCGGTCTTACAGGGTACGATTGCCAGGAT
CCAGATGCA
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Coding sequence (CDS) from alignment at H-elongata_contig54940:2879..3037-

>mRNA_H-elongata_contig54940.12892.1 ID=mRNA_H-elongata_contig54940.12892.1|Name=mRNA_H-elongata_contig54940.12892.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig54940:2879..3037- (Himanthalia elongata Himel1 dioecious)
TGCAATGGAATAGTGTTAGAAATCGCCGATGGTTATTGCGATGATGAGAA
CAACAATGCTAGATGCGGTTGGGATGGCGGAGATTGCTGTGAGTGCACAT
GTATTTCTTCTGGCTTTACATGCGGTCTTACAGGGTACGATTGCCAGGAT
CCAGATGCATGCAATGGAATAGTGTTAGAAATCGCCGATGGTTATTGCGA
TGATGAGAACAACAATGCTAGATGCGGTTGGGATGGCGGAGATTGCTGTG
AGTGCACATGTATTTCTTCTGGCTTTACATGCGGTCTTACAGGGTACGAT
TGCCAGGATCCAGATGCA
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