mRNA_H-elongata_contig54621.12850.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54621.12850.1
Unique NamemRNA_H-elongata_contig54621.12850.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54621.12850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54621contigH-elongata_contig54621:830..1540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size485
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54621.12850.1prot_H-elongata_contig54621.12850.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54621 937..1540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930890.0801375-UTR-H-elongata_contig54621:829..9361622930890.0801375-UTR-H-elongata_contig54621:829..936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54621 830..936 +
1691679613.244772-UTR-H-elongata_contig54621:829..9361691679613.244772-UTR-H-elongata_contig54621:829..936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54621 830..936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930890.0965486-CDS-H-elongata_contig54621:936..9591622930890.0965486-CDS-H-elongata_contig54621:936..959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54621 937..959 +
1691679613.2538028-CDS-H-elongata_contig54621:936..9591691679613.2538028-CDS-H-elongata_contig54621:936..959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54621 937..959 +
1622930890.1135774-CDS-H-elongata_contig54621:1185..15401622930890.1135774-CDS-H-elongata_contig54621:1185..1540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54621 1186..1540 +
1691679613.2682452-CDS-H-elongata_contig54621:1185..15401691679613.2682452-CDS-H-elongata_contig54621:1185..1540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54621 1186..1540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54621.12850.1

>prot_H-elongata_contig54621.12850.1 ID=prot_H-elongata_contig54621.12850.1|Name=mRNA_H-elongata_contig54621.12850.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MRRGDQSRGRRLQSVYRRTGLRETGDPGFQESRKRDRRTGDGGTVTALAP
RREERGEEAEVDQTPLDGAGSVPRQGRVKNARVLFVKKSSRCPRSPKAKV
ERTPRETTRARVVWRGHLAFSSPCC*
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mRNA from alignment at H-elongata_contig54621:830..1540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54621.12850.1 ID=mRNA_H-elongata_contig54621.12850.1|Name=mRNA_H-elongata_contig54621.12850.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=711bp|location=Sequence derived from alignment at H-elongata_contig54621:830..1540+ (Himanthalia elongata Himel1 dioecious)
GGGGGCGGGAAGAGAGCGCAGAGACTGGGGAGAAAAGCCTCTGACAGAAG
GAGGGGATAGGGGGCAAGATCGGGAGCAGTATCCCGAAGCGCCGAGCCAA
GTGGCGGATGCGTCGGGGGGATCAAAGCAGGTGCGTTGGTTTTGAAAGCA
GCGTTTTGACTGAAGGGTGGGGGTATTCTTCGCTCAGTATCTTCCCCCCC
CCCTTCTCGAACATCATTAATTTAAAACGATTTTTTAAAAGCTCTAGGGT
GAGAGTAAAATCTAAAAGCATGTGCTCCCGTGACTTTCACGACTACCGAA
TGATTTTTGATTTTTTTTTCTCCATTTTTGATTTTTTTTCTATTATGATT
TGACAGGGGTCGGCGGCTCCAAAGCGTATATCGACGAACAGGCCTACGAG
AAACAGGGGACCCGGGTTTCCAAGAGAGTCGAAAGCGAGATCGACGGACA
GGAGACGGGGGGACAGTGACGGCATTGGCGCCGCGAAGGGAGGAGAGGGG
GGAGGAGGCAGAAGTGGATCAGACGCCGCTTGATGGGGCTGGGTCGGTTC
CACGCCAGGGAAGAGTGAAAAACGCGCGGGTGTTGTTCGTCAAGAAGAGT
TCCAGATGCCCGAGATCGCCGAAGGCCAAGGTCGAGCGGACTCCTCGCGA
GACGACACGCGCGCGAGTTGTTTGGCGTGGTCATTTAGCATTCTCGAGCC
CCTGCTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig54621:830..1540+

>mRNA_H-elongata_contig54621.12850.1 ID=mRNA_H-elongata_contig54621.12850.1|Name=mRNA_H-elongata_contig54621.12850.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig54621:830..1540+ (Himanthalia elongata Himel1 dioecious)
ATGCGTCGGGGGGATCAAAGCAGATGCGTCGGGGGGATCAAAGCAGGGGT
CGGCGGCTCCAAAGCGTATATCGACGAACAGGCCTACGAGAAACAGGGGA
CCCGGGTTTCCAAGAGAGTCGAAAGCGAGATCGACGGACAGGAGACGGGG
GGACAGTGACGGCATTGGCGCCGCGAAGGGAGGAGAGGGGGGAGGAGGCA
GAAGTGGATCAGACGCCGCTTGATGGGGCTGGGTCGGTTCCACGCCAGGG
AAGAGTGAAAAACGCGCGGGTGTTGTTCGTCAAGAAGAGTTCCAGATGCC
CGAGATCGCCGAAGGCCAAGGTCGAGCGGACTCCTCGCGAGACGACACGC
GCGCGAGTTGTTTGGCGTGGTCATTTAGCATTCTCGAGCCCCTGCTGCTG
AGGGTCGGCGGCTCCAAAGCGTATATCGACGAACAGGCCTACGAGAAACA
GGGGACCCGGGTTTCCAAGAGAGTCGAAAGCGAGATCGACGGACAGGAGA
CGGGGGGACAGTGACGGCATTGGCGCCGCGAAGGGAGGAGAGGGGGGAGG
AGGCAGAAGTGGATCAGACGCCGCTTGATGGGGCTGGGTCGGTTCCACGC
CAGGGAAGAGTGAAAAACGCGCGGGTGTTGTTCGTCAAGAAGAGTTCCAG
ATGCCCGAGATCGCCGAAGGCCAAGGTCGAGCGGACTCCTCGCGAGACGA
CACGCGCGCGAGTTGTTTGGCGTGGTCATTTAGCATTCTCGAGCCCCTGC
TGCTGA
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