mRNA_H-elongata_contig54537.12838.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig54537.12838.1
Unique Name	mRNA_H-elongata_contig54537.12838.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig54537.12838.1 vs. uniprot

BLAST of mRNA_H-elongata_contig54537.12838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig54537	contig	H-elongata_contig54537:1640..3587 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	1916
Cds size	1194
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig54537.12838.1	prot_H-elongata_contig54537.12838.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig54537 1922..3115 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930888.366816-UTR-H-elongata_contig54537:1639..1921	1622930888.366816-UTR-H-elongata_contig54537:1639..1921	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig54537 1640..1921 +
1691679612.5145323-UTR-H-elongata_contig54537:1639..1921	1691679612.5145323-UTR-H-elongata_contig54537:1639..1921	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig54537 1640..1921 +
1622930888.405589-UTR-H-elongata_contig54537:3115..3260	1622930888.405589-UTR-H-elongata_contig54537:3115..3260	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig54537 3116..3260 +
1691679612.5409317-UTR-H-elongata_contig54537:3115..3260	1691679612.5409317-UTR-H-elongata_contig54537:3115..3260	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig54537 3116..3260 +
1622930888.425053-UTR-H-elongata_contig54537:3292..3587	1622930888.425053-UTR-H-elongata_contig54537:3292..3587	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig54537 3293..3587 +
1691679612.5524426-UTR-H-elongata_contig54537:3292..3587	1691679612.5524426-UTR-H-elongata_contig54537:3292..3587	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig54537 3293..3587 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930888.3869672-CDS-H-elongata_contig54537:1921..3115	1622930888.3869672-CDS-H-elongata_contig54537:1921..3115	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig54537 1922..3115 +
1691679612.5241532-CDS-H-elongata_contig54537:1921..3115	1691679612.5241532-CDS-H-elongata_contig54537:1921..3115	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig54537 1922..3115 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig54537:1640..3587+
coding sequence from alignment at H-elongata_contig54537:1640..3587+

protein sequence of mRNA_H-elongata_contig54537.12838.1

>prot_H-elongata_contig54537.12838.1 ID=prot_H-elongata_contig54537.12838.1|Name=mRNA_H-elongata_contig54537.12838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=398bp
MRAINSGDCESYNGKNKAISSCIPTRCKCIVASAARHSPIPMDFPRRRSG
FCLDATSRSNLYAEGGTRCDDLDQEHQEQTKNIPTPSNVLRRGIKSHRSR
RSPIPNDLPRRRSGFSLDTADISSRSTLYKTRSSGYHTDGAKGEPCPSGI
LRRTLTVNFLAPRWSPTPTAIDLPRKQPERFFEGFSLNTTSRSNLYAEGG
TKFGDLDREHQEQTKNKPTPSNALRRGIKSHRLRRSPIPNDLPRRRSGLS
LDTADISSRSTVKTTRSSGYHTDGAKGEPCPSGIIRRTLNVNLSAARWSP
TPTVIDLPRRRSERIFEATDVKARRLKIITSRGDNFDDAEREPVADMVQR
GNPWVNGTNPNPNDDPGGEGDDDMVAKLGSIGKKRENILSKKAMGVE*

mRNA from alignment at H-elongata_contig54537:1640..3587+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig54537.12838.1 ID=mRNA_H-elongata_contig54537.12838.1|Name=mRNA_H-elongata_contig54537.12838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1948bp|location=Sequence derived from alignment at H-elongata_contig54537:1640..3587+ (Himanthalia elongata Himel1 dioecious)
CGTAATACTAATGAGGATCAAGTTTCCGATGGGTGCAACATCCCAATCGA
TGGATTCGACGCACCACCTGCATCTGCATTGAACCTGGACTCCTTGACCC
CTTCAACGGCTGCCGATCATAAGGAGAATATATTAAGAGACGAAGAAGTT
CAGACTGATAGCTACGGACGGCGTCAAAACAAAAAAATACACCGACGGCA
TAACTCAGTCGTCCCCAGTGATCTACCGCGGCGTCGACATGGTTTCTCGC
TGGAGGCCGCAAGCAGCTCTGCCCAACCTTCAATGCGTGCCATAAACAGT
GGGGATTGCGAAAGTTATAACGGCAAAAATAAGGCAATATCGAGCTGTAT
TCCCACCAGATGTAAATGTATTGTTGCGTCGGCTGCACGACACTCGCCGA
TTCCGATGGATTTCCCACGTCGTCGGTCTGGTTTCTGCCTGGATGCCACT
AGCCGAAGCAATTTGTATGCTGAAGGTGGTACAAGATGTGACGATCTCGA
CCAAGAACACCAAGAACAAACCAAGAACATTCCAACACCGAGTAATGTCT
TACGGCGTGGTATCAAATCCCATCGCTCACGTCGCTCGCCTATCCCGAAC
GATCTTCCTCGCCGTCGGTCGGGTTTCTCGTTGGATACTGCTGACATTAG
TTCGCGGTCCACGTTATATAAAACGCGCAGCAGTGGTTACCACACAGATG
GTGCCAAGGGCGAGCCATGTCCGAGTGGCATACTTCGACGGACCCTAACC
GTCAATTTCTTGGCACCCCGTTGGTCGCCTACGCCTACGGCCATCGATCT
CCCGCGGAAACAGCCAGAACGTTTCTTTGAAGGTTTCTCCCTGAATACCA
CTAGCCGAAGTAATTTGTATGCTGAAGGTGGTACAAAATTTGGCGATCTC
GACCGAGAACACCAAGAGCAAACCAAGAACAAGCCAACACCGAGTAATGC
CTTAAGGCGTGGTATCAAATCCCATCGCTTACGTCGCTCGCCTATCCCGA
ACGATCTTCCTCGCCGTCGTTCGGGTTTATCGCTGGATACTGCTGACATC
AGTTCGCGGTCCACGGTAAAAACAACGCGCAGCAGTGGTTACCACACAGA
TGGTGCTAAGGGTGAGCCATGTCCGAGTGGCATAATTCGACGAACCCTAA
ACGTCAATTTATCGGCAGCCCGTTGGTCGCCTACGCCTACGGTCATCGAT
CTCCCGCGGAGACGGTCAGAACGTATCTTTGAAGCTACTGACGTCAAGGC
GCGGCGCTTGAAAATAATCACGAGCAGGGGAGATAACTTCGACGACGCCG
AGCGTGAGCCAGTGGCGGATATGGTACAACGTGGAAACCCATGGGTAAAT
GGCACTAACCCTAACCCAAATGACGATCCTGGGGGAGAAGGCGATGATGA
TATGGTGGCCAAGCTCGGAAGCATCGGAAAAAAACGGGAAAATATCCTCT
CTAAGAAAGCGATGGGAGTTGAGTGAGCGGAACCGGTGATTGTGGATATT
CCACGTCGCTCCCGTGGTCATGACATGACCTGACATGGTAAAAAACTGGA
AGCTTTTGTGATAACGAGATGCTGTATGCGTCTGATGACTTAGCTAACCC
TAACCCTTACTTTATCAAATTGTTTTATAATGCGGCATGAAGCTTCTTCG
AAGTTTTCACGGTACAATTTGATTTCATGGCGGCTATGAAGGGCTGTGAA
GGGGTAGGGAGGGCACAAAGCGCCAGAACGAGCTACTACAGTATAACGAA
TACTACTATAGTATAGTATAGTATAGTAATATTATCCTGTAGATCAAGAT
CGGTCGCGCATTTGACATTAGCGGGGGTTTTCTCTCTAGCTCTAGCCCTA
ACCCAGACGTGTTGTATACTTTGAAACTTGGGTAAAAGTTGTGTGACTCA
AGGAGTTTAGGTAAAAATATGATATACGATAAGGCAAAAAAGTTCCGG

Coding sequence (CDS) from alignment at H-elongata_contig54537:1640..3587+

>mRNA_H-elongata_contig54537.12838.1 ID=mRNA_H-elongata_contig54537.12838.1|Name=mRNA_H-elongata_contig54537.12838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2388bp|location=Sequence derived from alignment at H-elongata_contig54537:1640..3587+ (Himanthalia elongata Himel1 dioecious)
ATGCGTGCCATAAACAGTGGGGATTGCGAAAGTTATAACGGCAAAAATAA
GGCAATATCGAGCTGTATTCCCACCAGATGTAAATGTATTGTTGCGTCGG
CTGCACGACACTCGCCGATTCCGATGGATTTCCCACGTCGTCGGTCTGGT
TTCTGCCTGGATGCCACTAGCCGAAGCAATTTGTATGCTGAAGGTGGTAC
AAGATGTGACGATCTCGACCAAGAACACCAAGAACAAACCAAGAACATTC
CAACACCGAGTAATGTCTTACGGCGTGGTATCAAATCCCATCGCTCACGT
CGCTCGCCTATCCCGAACGATCTTCCTCGCCGTCGGTCGGGTTTCTCGTT
GGATACTGCTGACATTAGTTCGCGGTCCACGTTATATAAAACGCGCAGCA
GTGGTTACCACACAGATGGTGCCAAGGGCGAGCCATGTCCGAGTGGCATA
CTTCGACGGACCCTAACCGTCAATTTCTTGGCACCCCGTTGGTCGCCTAC
GCCTACGGCCATCGATCTCCCGCGGAAACAGCCAGAACGTTTCTTTGAAG
GTTTCTCCCTGAATACCACTAGCCGAAGTAATTTGTATGCTGAAGGTGGT
ACAAAATTTGGCGATCTCGACCGAGAACACCAAGAGCAAACCAAGAACAA
GCCAACACCGAGTAATGCCTTAAGGCGTGGTATCAAATCCCATCGCTTAC
GTCGCTCGCCTATCCCGAACGATCTTCCTCGCCGTCGTTCGGGTTTATCG
CTGGATACTGCTGACATCAGTTCGCGGTCCACGGTAAAAACAACGCGCAG
CAGTGGTTACCACACAGATGGTGCTAAGGGTGAGCCATGTCCGAGTGGCA
TAATTCGACGAACCCTAAACGTCAATTTATCGGCAGCCCGTTGGTCGCCT
ACGCCTACGGTCATCGATCTCCCGCGGAGACGGTCAGAACGTATCTTTGA
AGCTACTGACGTCAAGGCGCGGCGCTTGAAAATAATCACGAGCAGGGGAG
ATAACTTCGACGACGCCGAGCGTGAGCCAGTGGCGGATATGGTACAACGT
GGAAACCCATGGGTAAATGGCACTAACCCTAACCCAAATGACGATCCTGG
GGGAGAAGGCGATGATGATATGGTGGCCAAGCTCGGAAGCATCGGAAAAA
AACGGGAAAATATCCTCTCTAAGAAAGCGATGGGAGTTGAGTGAATGCGT
GCCATAAACAGTGGGGATTGCGAAAGTTATAACGGCAAAAATAAGGCAAT
ATCGAGCTGTATTCCCACCAGATGTAAATGTATTGTTGCGTCGGCTGCAC
GACACTCGCCGATTCCGATGGATTTCCCACGTCGTCGGTCTGGTTTCTGC
CTGGATGCCACTAGCCGAAGCAATTTGTATGCTGAAGGTGGTACAAGATG
TGACGATCTCGACCAAGAACACCAAGAACAAACCAAGAACATTCCAACAC
CGAGTAATGTCTTACGGCGTGGTATCAAATCCCATCGCTCACGTCGCTCG
CCTATCCCGAACGATCTTCCTCGCCGTCGGTCGGGTTTCTCGTTGGATAC
TGCTGACATTAGTTCGCGGTCCACGTTATATAAAACGCGCAGCAGTGGTT
ACCACACAGATGGTGCCAAGGGCGAGCCATGTCCGAGTGGCATACTTCGA
CGGACCCTAACCGTCAATTTCTTGGCACCCCGTTGGTCGCCTACGCCTAC
GGCCATCGATCTCCCGCGGAAACAGCCAGAACGTTTCTTTGAAGGTTTCT
CCCTGAATACCACTAGCCGAAGTAATTTGTATGCTGAAGGTGGTACAAAA
TTTGGCGATCTCGACCGAGAACACCAAGAGCAAACCAAGAACAAGCCAAC
ACCGAGTAATGCCTTAAGGCGTGGTATCAAATCCCATCGCTTACGTCGCT
CGCCTATCCCGAACGATCTTCCTCGCCGTCGTTCGGGTTTATCGCTGGAT
ACTGCTGACATCAGTTCGCGGTCCACGGTAAAAACAACGCGCAGCAGTGG
TTACCACACAGATGGTGCTAAGGGTGAGCCATGTCCGAGTGGCATAATTC
GACGAACCCTAAACGTCAATTTATCGGCAGCCCGTTGGTCGCCTACGCCT
ACGGTCATCGATCTCCCGCGGAGACGGTCAGAACGTATCTTTGAAGCTAC
TGACGTCAAGGCGCGGCGCTTGAAAATAATCACGAGCAGGGGAGATAACT
TCGACGACGCCGAGCGTGAGCCAGTGGCGGATATGGTACAACGTGGAAAC
CCATGGGTAAATGGCACTAACCCTAACCCAAATGACGATCCTGGGGGAGA
AGGCGATGATGATATGGTGGCCAAGCTCGGAAGCATCGGAAAAAAACGGG
AAAATATCCTCTCTAAGAAAGCGATGGGAGTTGAGTGA