mRNA_H-elongata_contig54463.12827.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE) HSP 1 Score: 159 bits (402), Expect = 3.780e-43 Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1
Query: 7 LTLRDVCQQEFYRFQERFKEAKMKDYPLGALFKFWAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPIEVPSL 324
LT+++VCQQEF RF RF + + DYP+ L +FWA EG +LYPNMAR ARVLLSVPA+SAVLERDFSTAGRL+TG+RSRL+ Y+EM LFLNGNQEYIP+EVP L
Sbjct: 682 LTMKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKL 787
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 5.870e-16 Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 97 LFKFWAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPIEVPSL 324
+ K+W + H+ YP +ARVARV+ PA++AVLERDFS AGR++T SRS + +Y+EM +FL+GN + IP ++ L
Sbjct: 607 VLKWWKMWAHA-YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKL 681
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 7.750e-15 Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 94 ALFKFWAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPIEVPS 321
++ K+W S YP +AR ARV+ PA++AVLE DF AGR++T SRS +Y+EM LFL+GN + IP ++P+
Sbjct: 36 SVLKWWK-RWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPA 110
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 1.700e-14 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 97 LFKFWAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPIEVPSL 324
+ K+W + H+ YP +ARVARV++ A++AVLE DFS AGR++T SRS + +Y+EM LFL+GN + IP ++ L
Sbjct: 380 VLKWWKMWAHA-YPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL 454
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 5.610e-14 Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 130 LYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRL-AGEYIEMTLFLNGNQEYIPIEVPSL 324
+YP +ARVARV+ PA++AVLERDFS AGR++T SR + + Y+EM LFL+GN + IP ++ L
Sbjct: 5 VYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL 70
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 6.590e-12 Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 97 LFKFWAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPIEVPSL 324
+ ++W G LYP +AR ARV+ PA++AVLERDF+ A ++ SRS +Y+EM LFL+GN + IP ++P L
Sbjct: 547 VLEWWKKWGR-LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPEL 621
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 3.830e-10 Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 151 VARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPI-EVPSL 324
VARVL S+P++SA +ERDF TAGR++T RS LA ++MT FLN N+ Y+ I + P L
Sbjct: 42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYVDITQCPKL 100
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A1A8IFU3_NOTKU (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8IFU3_NOTKU) HSP 1 Score: 60.8 bits (146), Expect = 9.160e-10 Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 109 WAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQE 297
W E HSLYP+++++A L VP S ER FSTAG ++T SRS L+ E++++ +FL N E
Sbjct: 45 WWKEHHSLYPHLSKLALCYLVVPGTSVPSERVFSTAGDIVTASRSVLSAEHVDILIFLKKNME 107
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93) HSP 1 Score: 62.8 bits (151), Expect = 1.450e-9 Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 109 WAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGN 291
W E ++P++AR+AR +LS+PA SA ERDFSTAG +++ RS+L+ E ++ LFL+ N
Sbjct: 173 WWKEHSEMFPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM) HSP 1 Score: 59.3 bits (142), Expect = 4.970e-9 Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 151 VARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPI 309
VARV+ S+P++SA +ERDF TAGR++T R+ LA ++MT FLN N+ Y+ I
Sbjct: 10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYVNI 62 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54463.12827.1 >prot_H-elongata_contig54463.12827.1 ID=prot_H-elongata_contig54463.12827.1|Name=mRNA_H-elongata_contig54463.12827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp PKLTLRDVCQQEFYRFQERFKEAKMKDYPLGALFKFWAVEGHSLYPNMARback to top mRNA from alignment at H-elongata_contig54463:275..598- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54463.12827.1 ID=mRNA_H-elongata_contig54463.12827.1|Name=mRNA_H-elongata_contig54463.12827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig54463:275..598- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54463:275..598- >mRNA_H-elongata_contig54463.12827.1 ID=mRNA_H-elongata_contig54463.12827.1|Name=mRNA_H-elongata_contig54463.12827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig54463:275..598- (Himanthalia elongata Himel1 dioecious)back to top |