mRNA_H-elongata_contig54156.12785.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54156.12785.1
Unique NamemRNA_H-elongata_contig54156.12785.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Match: D7FX40_ECTSI (Beta(1,4)-N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX40_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.470e-24
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 GGHTSEMLKLTSHLSQETYTPLTYVVASTDHTSAQRIPREGLLSGRCYVRKIPRSREV 174
            GGHTSEMLKLTS LS ETY+PL YVVASTDHTSA RIP+EGL+SGRC VR IPRSREV
Sbjct:    4 GGHTSEMLKLTSRLSPETYSPLCYVVASTDHTSADRIPKEGLMSGRCRVRAIPRSREV 61
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BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Match: A0A6H5JAQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.080e-21
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 GGHTSEMLKLTSHLSQETYTPLTYVVASTDHTSAQRIPREGLLSGRCYVRKIPRSREV 174
            GGHTSEMLKLTS LS ETY+PL YVVASTDHTSA RIP+EGL+SGR  V  IPRSREV
Sbjct:   64 GGHTSEMLKLTSRLSPETYSPLCYVVASTDHTSADRIPKEGLMSGRSRVLTIPRSREV 121
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BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Match: A0A835YPL6_9STRA (Beta-N-acetylglucosaminyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.560e-9
Identity = 32/60 (53.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    1 GGHTSEMLKLTSHLSQETYTPLTYVVASTDHTSAQRIPREGLLSGRC--YVRKIPRSREV 174
            GGHT+EMLKL      + Y PL YV+A+TDHTSA RIP      G     V  +PRSREV
Sbjct:    7 GGHTTEMLKLLQGAPTDVYAPLHYVIAATDHTSADRIPHADAAPGSAATVVHTVPRSREV 66
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BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Match: W4G189_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G189_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.240e-9
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 GGHTSEMLKLTSHLSQETYTPLTYVVASTDHTSAQRIPREGLLSGRCYVRKIPRSREV 174
            GGHT+EMLKL   LS +TY PL +VVA++DHTS ++   E    G  +   IPRSREV
Sbjct:   65 GGHTTEMLKLIKRLSMDTYAPLAFVVAASDHTSEEKARVERKDDGPLHFYTIPRSREV 122
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BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Match: W4G327_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G327_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.970e-9
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 GGHTSEMLKLTSHLSQETYTPLTYVVASTDHTSAQRIPREGLLSGRCYVRKIPRSREV 174
            GGHT+EMLKL   LS +TY PL +VVA++DHTS ++   E    G  +   IPRSREV
Sbjct:   65 GGHTTEMLKLIKRLSMDTYAPLAFVVAASDHTSEEKARVERKDDGPLHFYTIPRSREV 122
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BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Match: A0A0M0K5L7_9EUKA (Udp-n-acetylglucosamine transferase subunit alg14-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K5L7_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 5.300e-6
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 GGHTSEMLKLTSHLSQETYTPLTYVVASTDHTSAQRIPR----EGLLSGRCYVRKIPRSREV 174
            GGHT+EML L   L +  Y+P  YV+A+TDHTSAQRI      +        +  +PRSREV
Sbjct:    7 GGHTAEMLALLKTLDRSLYSPREYVIATTDHTSAQRIEAFEASDNANKSNHRLLLLPRSREV 68
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BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Match: A0A024G7V2_9STRA (CN hydrolase domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G7V2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.140e-5
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 GGHTSEMLKLTSHLSQETYTPLTYVVASTDHTSAQRIPREGLLSGRCYVRKIPRSREV 174
            GGHT+EML+L   L  E Y+P+T+VVAS+D TS ++   +  L        IPRSREV
Sbjct:    7 GGHTTEMLQLIRKLDTEIYSPITFVVASSDSTSIEKTKLDRHLHPNDQFIVIPRSREV 64
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BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Match: A0A418F1J0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F1J0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.490e-5
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 GGHTSEMLKLTSHLSQETYTPLTYVVASTDHTSAQR 108
            GGHT+EMLKL   LS +TY PL +VVA++DHTS ++
Sbjct:   65 GGHTTEMLKLIKRLSMDTYAPLAFVVAASDHTSEEK 100
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BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Match: A0A6A5AWN2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AWN2_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.770e-5
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   19 MLKLTSHLSQETYTPLTYVVASTDHTSAQRIPREGLLSGRCYVRKIPRSREV 174
            MLKL   LS +TY PL +VVA++DHTS ++   E    G  +   IPRSREV
Sbjct:    1 MLKLIKRLSMDTYAPLAFVVAASDHTSEEKARVERKDDGTLHFYTIPRSREV 52
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BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Match: A0A6J1P119_BICAN (UDP-N-acetylglucosamine transferase subunit ALG14 homolog n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1P119_BICAN)

HSP 1 Score: 48.1 bits (113), Expect = 5.600e-5
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    1 GGHTSEMLKLTSHLSQETYTPLTYVVASTDHTSAQRIPREGLLSGRCYVRKIPRSREVR 177
            GGHT+E+L++ SHL  E Y P  Y++A  D +S  +I  +   S    + +IPRSR V+
Sbjct:   52 GGHTTELLRIVSHLDAEKYAPRLYIMAMNDVSSEVKIREQERDSTEYQIYRIPRSRNVK 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54156.12785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FX40_ECTSI1.470e-2484.48Beta(1,4)-N-acetylglucosaminyltransferase n=1 Tax=... [more]
A0A6H5JAQ0_9PHAE2.080e-2181.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPL6_9STRA1.560e-953.33Beta-N-acetylglucosaminyltransferase n=1 Tax=Tribo... [more]
W4G189_9STRA3.240e-953.45Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4G327_9STRA3.970e-953.45Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A0M0K5L7_9EUKA5.300e-646.77Udp-n-acetylglucosamine transferase subunit alg14-... [more]
A0A024G7V2_9STRA1.140e-548.28CN hydrolase domain-containing protein n=1 Tax=Alb... [more]
A0A418F1J0_9STRA1.490e-561.11Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A6A5AWN2_9STRA1.770e-550.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6J1P119_BICAN5.600e-540.68UDP-N-acetylglucosamine transferase subunit ALG14 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54156contigH-elongata_contig54156:3494..3673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue4.9e-15
Seed eggNOG ortholog2880.D7FX40
Preferred nameALG14
KEGG koko:K01363,ko:K07441
KEGG ReactionR05970
KEGG Pathwayko00510,ko00513,ko01100,ko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map00510,map00513,map01100,map04140,map04142,map04210,map04612,map04621,map04924
KEGG ModuleM00055
GOsGO:0003674,GO:0003824,GO:0004577,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0007154,GO:0007267,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0023052,GO:0030154,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032502,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043495,GO:0043541,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045168,GO:0046331,GO:0048869,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dolichol-linked oligosaccharide biosynthetic process
EggNOG OGsKOG3339@1,KOG3339@2759
Ec32 ortholog descriptionbeta(1,4)-N-acetylglucosaminyltransferase
Ec32 orthologEc-10_004190.1
EC2.4.1.141,3.4.22.1
COG Functional cat.S
CAZyGT1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01002,ko01003,ko03110,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size162
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.3458695-UTR-H-elongata_contig54156:3493..35111622930882.3458695-UTR-H-elongata_contig54156:3493..3511Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54156 3494..3511 +
1691679610.0127985-UTR-H-elongata_contig54156:3493..35111691679610.0127985-UTR-H-elongata_contig54156:3493..3511Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54156 3494..3511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.3714454-CDS-H-elongata_contig54156:3511..36731622930882.3714454-CDS-H-elongata_contig54156:3511..3673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54156 3512..3673 +
1691679610.029065-CDS-H-elongata_contig54156:3511..36731691679610.029065-CDS-H-elongata_contig54156:3511..3673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54156 3512..3673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54156.12785.1prot_H-elongata_contig54156.12785.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54156 3512..3673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54156.12785.1

>prot_H-elongata_contig54156.12785.1 ID=prot_H-elongata_contig54156.12785.1|Name=mRNA_H-elongata_contig54156.12785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MLKLTSHLSQETYTPLTYVVASTDHTSAQRIPREGLLSGRCYVRKIPRSR
EVR*
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mRNA from alignment at H-elongata_contig54156:3494..3673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54156.12785.1 ID=mRNA_H-elongata_contig54156.12785.1|Name=mRNA_H-elongata_contig54156.12785.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig54156:3494..3673+ (Himanthalia elongata Himel1 dioecious)
GGCGGACACACCTCAGAGATGCTCAAGCTCACCTCCCATCTCTCGCAGGA
GACTTACACGCCCCTCACCTACGTGGTGGCCAGCACGGATCACACCAGCG
CGCAGCGCATCCCTCGGGAGGGGTTACTTTCGGGACGATGTTACGTGCGC
AAGATACCGCGCAGCAGAGAGGTGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig54156:3494..3673+

>mRNA_H-elongata_contig54156.12785.1 ID=mRNA_H-elongata_contig54156.12785.1|Name=mRNA_H-elongata_contig54156.12785.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig54156:3494..3673+ (Himanthalia elongata Himel1 dioecious)
ATGCTCAAGCTCACCTCCCATCTCTCGCAGGAGACTTACACGCCCCTCAC
CTACGTGGTGGCCAGCACGGATCACACCAGCGCGCAGCGCATCCCTCGGG
AGGGGTTACTTTCGGGACGATGTTACGTGCGCAAGATACCGCGCAGCAGA
GAGGTGAGGTGAATGCTCAAGCTCACCTCCCATCTCTCGCAGGAGACTTA
CACGCCCCTCACCTACGTGGTGGCCAGCACGGATCACACCAGCGCGCAGC
GCATCCCTCGGGAGGGGTTACTTTCGGGACGATGTTACGTGCGCAAGATA
CCGCGCAGCAGAGAGGTGAGGTGA
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