mRNA_H-elongata_contig54150.12784.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54150.12784.1
Unique NamemRNA_H-elongata_contig54150.12784.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.260e-22
Identity = 62/147 (42.18%), Postives = 83/147 (56.46%), Query Frame = 1
Query:    4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESPWSSPGD-----TAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSE-GSSNVEIVR 426
            RCRL  SPATGLV MQEN FL  FF  +GF+P+TT S+IRET+V++M      ++     G  ++       +PG      +A  ++P           S C FWCAV LGALV G  IESV SY  LA++AL +S  G  + E+ +
Sbjct:    6 RCRLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMVPPASSQQSVFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPM--------DPSACTFWCAVALGALVKGSPIESVTSYAQLAQEALAKSNSGPGDAEVAK 144          
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.530e-22
Identity = 65/154 (42.21%), Postives = 79/154 (51.30%), Query Frame = 1
Query:    4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESPWSSPGDTAPHRVPR-------FEND------HGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
            R R   SPATGLVGMQEN  L  FF  +GF+P+TT+S IR  +VRMMT+                   +P   PG  APH  P        F  D        +TG S C FWCAV LGALV G  +ESV +Y  LA+DAL    G  + E+ +
Sbjct:   25 RFRWSASPATGLVGMQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTS------------------STPHHQPG--APHDSPAQGHFGSIFTEDGITPGNQLSTGPSACTFWCAVGLGALVKGSPVESVVNYSRLARDALDAYTGPVDAEVAK 158          
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 6.200e-22
Identity = 66/148 (44.59%), Postives = 82/148 (55.41%), Query Frame = 1
Query:    4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESPWS----SPGDTAPHRVPR--FENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSE-GSSNVEIVR 426
            RCRL  SPATGLVGMQEN FL  FF  +GF+P+TT S IRET+V +M     PR    +  +G+  +E        +PG        R  F  D  A     C FWCAV LGAL  G  IESV SY  LA++AL +S  G  + E+ +
Sbjct:   10 RCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIML----PRASSQQSVFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSA-----CTFWCAVALGALAKGSPIESVTSYAQLAQEALAKSNSGPGDAEVAK 148          
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LU25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU25_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 6.510e-22
Identity = 62/142 (43.66%), Postives = 80/142 (56.34%), Query Frame = 1
Query:    4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESP-WSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
            R RL  SPATGLVGMQEN FL  FF  +GF+P+TT S IR  +VRMMT    P R        ++ +    +S  G T  +++        + G S C FWCAV +GALV G  +ESV +Y  LA+DAL    G  N E+ +
Sbjct:   25 RFRLNASPATGLVGMQENVFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHRPDASYDSLDQGQFGAIFSEDGITTGNQL--------SAGPSACTFWCAVGVGALVKGSPVESVANYSRLARDALDAYTGPVNAEVAK 158          
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 9.210e-22
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESP-WSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
            RCRL  SPATGLVGMQEN FL  FF  +GF+P+TT+S +R  +VRMM       +++ R    ++ +    +S  G T  +++        +TG S C FWCAV +GALV G+  ESV  Y  LA+ AL    G  + E+ +
Sbjct:   95 RCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTRSHVRGAMVRMMAHSAAQHQLRARHDTPDQGQFGAIFSEDGITTGNQL--------STGPSACTFWCAVGVGALVKGRPAESVTIYSRLARGALDAYTGPVDAEVAK 228          
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LU24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.660e-21
Identity = 62/140 (44.29%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESP-WSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEI 420
            R RL  SPATGLVGMQEN FL  FF  +GF+P+TT S IR  +VRMMT    P R        ++ +    +S  G T  +++        + G S C FWCAV +GALV G  +ESV +Y  LA+DAL    G  N E+
Sbjct:   25 RFRLSASPATGLVGMQENTFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHRPDASYDSLDQGQFGAIFSEDGITTGNQL--------SAGPSACTFWCAVGVGALVKGSPVESVANYSRLARDALDAYTGPVNAEV 156          
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.320e-21
Identity = 63/141 (44.68%), Postives = 76/141 (53.90%), Query Frame = 1
Query:    4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESPWSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
            R RL  SPATGLVGMQEN FL  FF  +GF+P+TT S IR  +VRMMT    P   QL   +     +SP     D              +TG S C FWCAV +GALV G  +E V +Y  LA+DAL    G  N E+ +
Sbjct:   98 RFRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPH--QLGASY-----DSPEQCQFDAILTEDGITTGSQLSTGPSACTFWCAVGVGALVNGSPVELVGNYSGLARDALNAYTGPVNAEVAK 231          
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: A0A6H5JZG3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 8.010e-21
Identity = 59/117 (50.43%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESPWSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESV 354
            RC+ K SPATGLVGM EN FL  FF  +GFVP+TTQS IRET+V+MM T    ++    R   + DE+   +  GD    R+   EN   A G S C FWCAV LGALV G  + SV
Sbjct:   96 RCKFKASPATGLVGMPENTFLGDFFACVGFVPLTTQSHIRETMVKMMVTSTPSQKSAFGR---DCDEDDVLAKEGDI---RILSAENQLDA-GPSTCTFWCAVALGALVKGGGVASV 205          
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D7FTD5_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD5_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.170e-20
Identity = 57/149 (38.26%), Postives = 83/149 (55.70%), Query Frame = 1
Query:    4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRR------VQLRRGWGEKDEESPWSSPGDTAPHRVPR--FENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
            RCRL+ SPATGLVGM+E+ FL  FF   G +P+TT+S +R  +V +M     PR+      + +R  W E + E      G +    V R   + DH    A++C+ WCA+ LGAL+ G  +E VE YV LA+++L       ++E  R
Sbjct:  141 RCRLRASPATGLVGMKESGFLCDFFGCFGILPLTTESTVRNAMVEIMMGAELPRKRYNEEHLGVRTRWAEDEGEG--EEKGCSGDRTVVRRGTQPDH----AAMCMMWCAIALGALMRGVPVEHVEMYVNLARESLAECFDGRSIEHAR 283          
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LU18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU18_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.810e-20
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 1
Query:    1 SRCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESP-WSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
            +R RL  SPATGLVGMQEN FL  FF  +G +P+TT S +R  +VRMMT     +++       E+ +    ++  G T  +++         TG S C FWCAV +GA++ G+  ESV  Y  LA+DAL    G  N E+ +
Sbjct:   59 TRFRLSASPATGLVGMQENAFLNDFFGCVGLLPLTTPSHVRGAMVRMMTRSTAQQQLGALHDSPEQGQFGAIFAEDGITTGNQL--------LTGPSCCTFWCAVGVGAIMKGRTAESVAKYSRLARDALDAYNGPVNAEVAK 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV4_ECTSI3.260e-2242.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU29_ECTSI3.530e-2242.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCV1_ECTSI6.200e-2244.59Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D8LU25_ECTSI6.510e-2243.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU27_ECTSI9.210e-2241.55Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU24_ECTSI1.660e-2144.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBJ1_9PHAE2.320e-2144.68Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JZG3_9PHAE8.010e-2150.43Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FTD5_ECTSI1.170e-2038.26Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU18_ECTSI1.810e-2039.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54150contigH-elongata_contig54150:2600..3821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size426
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54150.12784.1prot_H-elongata_contig54150.12784.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54150 2600..3821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.206006-CDS-H-elongata_contig54150:2599..26741622930882.206006-CDS-H-elongata_contig54150:2599..2674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54150 2600..2674 -
1691679609.9797063-CDS-H-elongata_contig54150:2599..26741691679609.9797063-CDS-H-elongata_contig54150:2599..2674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54150 2600..2674 -
1622930882.2287102-CDS-H-elongata_contig54150:2993..32311622930882.2287102-CDS-H-elongata_contig54150:2993..3231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54150 2994..3231 -
1691679609.9913177-CDS-H-elongata_contig54150:2993..32311691679609.9913177-CDS-H-elongata_contig54150:2993..3231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54150 2994..3231 -
1622930882.2735753-CDS-H-elongata_contig54150:3708..38211622930882.2735753-CDS-H-elongata_contig54150:3708..3821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54150 3709..3821 -
1691679610.0006173-CDS-H-elongata_contig54150:3708..38211691679610.0006173-CDS-H-elongata_contig54150:3708..3821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54150 3709..3821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54150.12784.1

>prot_H-elongata_contig54150.12784.1 ID=prot_H-elongata_contig54150.12784.1|Name=mRNA_H-elongata_contig54150.12784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
SRCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTT
VPKPRRVQLRRGWGEKDEESPWSSPGDTAPHRVPRFENDHGATGASICLF
WCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR
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mRNA from alignment at H-elongata_contig54150:2600..3821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54150.12784.1 ID=mRNA_H-elongata_contig54150.12784.1|Name=mRNA_H-elongata_contig54150.12784.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1222bp|location=Sequence derived from alignment at H-elongata_contig54150:2600..3821- (Himanthalia elongata Himel1 dioecious)
AGCAGATGCAGGCTAAAAGTATCCCCAGCCACCGGTCTTGTGGGAATGCA AGAGAACTACTTCTTGAAGAGCTTCTTTGACTCCTTGGGTTTCGTGCCGG TGACGACCCAGAGGTAAGAACCAGACTCATGTACCGTACCGATCGAACTC GAGGAACTAATGATGTACCTGGTACAGCACATCGTGCAGGATCCCGCCAA TCGCAATCAAAGAGGTACCGAGGTCGCGAGATCGGTTTCTCCTAAGCTTC CCACGCCATCTAAAAAGCATAAAAAAAATAGTGTCCTCCATCTGACGGTT CATTCCGATCAAATTCTTCAATCGTCACGCATCAGAGGTGAATATTTCTC CCTCAACATTTAGCACAGGGGTACAATAAAGGGGCATGTATAGATTCGGC GTAATGATTAGCACAAACATATGCGATGTATAGTCTATTGAGTGGGAGCA AGAAATAAAAAGCTGAAATTTTGTTGTGAGATTCTTTGCTCATACATGGT AATAATCTTCGTTTCCCCGAACCAGCCCTCGTTCTCTAGCCCCATGATCA TTATCTCGGAATAACCCCATCGCTCTTGTTCATTTTGCAGCAAAATCCGT GAGACCATTGTGAGAATGATGACGACCGTCCCAAAGCCCAGGCGGGTCCA GCTTCGCCGAGGCTGGGGTGAGAAAGACGAGGAGAGTCCCTGGAGTTCGC CGGGCGATACAGCTCCACATAGGGTACCGCGGTTCGAGAACGATCATGGT GCCACGGGCGCGTCAATATGTTTGTTTTGGTGTGCGGTTACCCTGGGGGC CCTCGTAATGGGTCAGCGTATCGAATCGGTGAGTCGTCCATGTTTGTGAG ACAGTGTGCGGTGTATGTTCATGTGCGTGCGTTTCTCCCTCCTTCCATTT TTACATGAAAGCTTTACCAAGCGCCCTATTTTGCTACGAAGAGCACCGAA GCTCGTTTGCACATCTCAGAAGCAAGACATTACATTTTAAGTACTCAGGA GTTCAGGGTTGGAGCAGTCTGTACAAGGATCGGTGGACTGGGTGCATTCA AGCGACCGTACCGTTGGTCGACATCATCAGACAGGACTTTTTAATCCTCT ATTATTTTATTTTGATATTACACAACCTTACACATAATGGACGGCAGGTG GAGAGCTACGTGTGCTTGGCGAAAGATGCCTTGCGTCGCTCCGAGGGATC ATCGAACGTCGAGATAGTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig54150:2600..3821-

>mRNA_H-elongata_contig54150.12784.1 ID=mRNA_H-elongata_contig54150.12784.1|Name=mRNA_H-elongata_contig54150.12784.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig54150:2600..3821- (Himanthalia elongata Himel1 dioecious)
AGCAGATGCAGGCTAAAAGTATCCCCAGCCACCGGTCTTGTGGGAATGCA
AGAGAACTACTTCTTGAAGAGCTTCTTTGACTCCTTGGGTTTCGTGCCGG
TGACGACCCAGAGAGCAGATGCAGGCTAAAAGTATCCCCAGCCACCGGTC
TTGTGGGAATGCAAGAGAACTACTTCTTGAAGAGCTTCTTTGACTCCTTG
GGTTTCGTGCCGGTGACGACCCAGAGCAAAATCCGTGAGACCATTGTGAG
AATGATGACGACCGTCCCAAAGCCCAGGCGGGTCCAGCTTCGCCGAGGCT
GGGGTGAGAAAGACGAGGAGAGTCCCTGGAGTTCGCCGGGCGATACAGCT
CCACATAGGGTACCGCGGTTCGAGAACGATCATGGTGCCACGGGCGCGTC
AATATGTTTGTTTTGGTGTGCGGTTACCCTGGGGGCCCTCGTAATGGGTC
AGCGTATCGAATCGCAAAATCCGTGAGACCATTGTGAGAATGATGACGAC
CGTCCCAAAGCCCAGGCGGGTCCAGCTTCGCCGAGGCTGGGGTGAGAAAG
ACGAGGAGAGTCCCTGGAGTTCGCCGGGCGATACAGCTCCACATAGGGTA
CCGCGGTTCGAGAACGATCATGGTGCCACGGGCGCGTCAATATGTTTGTT
TTGGTGTGCGGTTACCCTGGGGGCCCTCGTAATGGGTCAGCGTATCGAAT
CGGTGGAGAGCTACGTGTGCTTGGCGAAAGATGCCTTGCGTCGCTCCGAG
GGATCATCGAACGTCGAGATAGTGAGGGTGGAGAGCTACGTGTGCTTGGC
GAAAGATGCCTTGCGTCGCTCCGAGGGATCATCGAACGTCGAGATAGTGA
GG
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