mRNA_H-elongata_contig54029.12770.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54029.12770.1
Unique NamemRNA_H-elongata_contig54029.12770.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54029.12770.1 vs. uniprot
Match: A0A6H5KWI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWI4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.350e-14
Identity = 48/81 (59.26%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:  412 MKEEKPKRRGPMMNLFKRDSGSQRATTLEQALSAESPDVAAFRQATAAVLARSAPRDRFVVKEPAVLEEASITPVDGEGEA 654
            +K EK KR+ P+++LFKRD+G QR+TT+++ALS ESP+VA FR+  AAVLA SAP+  F V+EP +L EA+I P D EGEA
Sbjct:  423 IKPEKSKRK-PILSLFKRDTGPQRSTTMQEALSDESPNVADFRRGLAAVLAESAPKGEFDVEEPTLLAEATIVPEDFEGEA 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54029.12770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWI4_9PHAE1.350e-1459.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54029contigH-elongata_contig54029:216..3754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue3.2e-17
Seed eggNOG ortholog2880.D8LKD4
EggNOG OGs2CI7K@1,2S3QS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_001190.1
Exons4
Model size654
Cds size654
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54029.12770.1prot_H-elongata_contig54029.12770.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54029 216..3754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.1444602-CDS-H-elongata_contig54029:215..3531622930880.1444602-CDS-H-elongata_contig54029:215..353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54029 216..353 -
1691679609.1352384-CDS-H-elongata_contig54029:215..3531691679609.1352384-CDS-H-elongata_contig54029:215..353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54029 216..353 -
1622930880.168311-CDS-H-elongata_contig54029:925..12221622930880.168311-CDS-H-elongata_contig54029:925..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54029 926..1222 -
1691679609.146115-CDS-H-elongata_contig54029:925..12221691679609.146115-CDS-H-elongata_contig54029:925..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54029 926..1222 -
1622930880.190736-CDS-H-elongata_contig54029:2521..26011622930880.190736-CDS-H-elongata_contig54029:2521..2601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54029 2522..2601 -
1691679609.1557105-CDS-H-elongata_contig54029:2521..26011691679609.1557105-CDS-H-elongata_contig54029:2521..2601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54029 2522..2601 -
1622930880.2115078-CDS-H-elongata_contig54029:3615..37541622930880.2115078-CDS-H-elongata_contig54029:3615..3754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54029 3616..3754 -
1691679609.165528-CDS-H-elongata_contig54029:3615..37541691679609.165528-CDS-H-elongata_contig54029:3615..3754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54029 3616..3754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54029.12770.1

>prot_H-elongata_contig54029.12770.1 ID=prot_H-elongata_contig54029.12770.1|Name=mRNA_H-elongata_contig54029.12770.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
AAPRSPSAGSGKPRVSPEEAEADTKKMEDSLRSATFDVDEDLFGDTASDS
SAKPSPPPLPASESSLSPEAAREKREDDHTAEGAGVASTAADATVAEEAT
QASVDGGEGSASSRARAAEEYSPVAPSSEPASVTPLPMKEEKPKRRGPMM
NLFKRDSGSQRATTLEQALSAESPDVAAFRQATAAVLARSAPRDRFVVKE
PAVLEEASITPVDGEGEA
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mRNA from alignment at H-elongata_contig54029:216..3754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54029.12770.1 ID=mRNA_H-elongata_contig54029.12770.1|Name=mRNA_H-elongata_contig54029.12770.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3539bp|location=Sequence derived from alignment at H-elongata_contig54029:216..3754- (Himanthalia elongata Himel1 dioecious)
GCCGCGCCCAGATCACCATCGGCGGGGAGTGGAAAGCCTAGGGTTTCCCC
CGAGGAGGCGGAAGCGGACACGAAGAAGATGGAGGACAGCCTCAGGAGCG
CCACGTTCGACGTGGACGAGGATCTCTTCGGAGACACCGGTGGGTGGGTT
GGGAAAATGCTGCGGCTGCTTTATGTTATCGTTTCGCGTCTACCAATCTG
TATTTTTATTTTATTTTTTGCCTATTTTTTTTGCGAAAAACTTGCTGTAC
TCATTGAGTAGGAGCGAGAAAAGAGTGACGCTAATTTATGTCGGAATTGG
ACGCCCGTGTACTGGTCGACGGTTGATGCCGTCAGAGCTTGCCTTCTGGG
GTTCGGTTTTTGTAGTGTAGAGTTGGCGTTGTCTTTAGATCGCACTCGCC
GGGATCTAATGGGAAAACGTACAGCTTAACGGGGGAGAGGGGGTGGGGGG
TGATACTTAAACACAGCGAAAAAATTTGTCGCGATTTATTATGAAATACA
GGCGGTGCGCGTGGCGAGGGGCGTATCTCCGAGGTTTGACGTCACCCGTT
GACAGTCGTATCTACTATGATTCTTGTGGCTGACCAAGCAGCTCGATGAT
TCTTGTTGCTGACCAAGAAACTGTGTAGCCGTAGGTCCTCGGTTGCGACT
TCGGTTGCGAGGGGCGACACGCGAAAAGTTTGAAACAACAACAAGAAACC
TCGGCCGTCCCAACCAATCTCCTCTGTTTGTATTTCGTGTCAAGAGCTGC
GCTGCGCTTCTCCAAACATTGTACCGCGAAGCACAACTCTAAAAATTCTG
GATAGTTATACCAAAAAAAAATAAAAAAAAACTTCCACGCCCCTTGGCAC
TCGAATAATATCGCGGTGCTCCTTGGCCGCTCTGCTATGTCGGTATCACG
CGCTCTCAAAAAATGTCCAACCTCGAATGGCGTTGACTCCCCTTCGCCCC
GTTCAGACAAGGTTGCTGCCCCTGGTGCTCGTTTTTTGTTTGTTTTTATC
GTCTTTTCTCTCATTTTGTCTTATTTCGTGTTATTTTTTCGCATTTTTCT
TTTCTTGTCTTGAATCTCATTTTGTCTTCTCTTGTCTTGACTCTCATTTT
GTCTTCTCGTGTCACCTCTTGTATAATTTTGTCTTTTTTTGGCCGACGAC
CAGCGAGCGACTCATCGGCGAAGCCCTCGCCACCTCCGCTGCCGGCCTCA
GAGTCGTCGCTTTCTCCTGAAGCAGCGCGAGAGGTATGCTTCGCGCTCCC
TTGAAAAACGAACCTGTAAACGCTGGACTTCACCTCTCATGCTGTAAAGA
GAGTGTGGATGTTCGAAGGGTTTTAAGGATTTCATACGTTTTAAAAAGAA
AAATAGAAGCACAAAAAACAAATACGCAAAACGCAGAAGCGCAAGAAACA
GAAACAGAAACAGAAACAAAAAAATCAACGATACGAAAAACAGAGACTCA
AAAAAACAGAGTCACGAAGATCAGAAAGACAAAAAAAATAATAGGAGCAA
CGACAAGACTCTAGGATTAGGATGTCTCGACACGACTTGATGTGTTAGAG
AAGGCCGAAGTAAGTATTACGGGGAGTTAGAGTCGGGGAAGGGAGAGAGG
AGTATCAACGCAACGGAATATGGAAGTAACCAGCGACTACCTGCAGATGT
GTGTGTGTCTGTATATTTATTAAATTGCACATAACCGTGTAATCCGGCTC
TGTCGCGCTAGTCCTTCTAGGCTACACTTTTCAGGCGCGAACGGGGACAG
GGGAAAATATTTTCCCCCTGTTCAGCTGACCACGAGTAGAAGGCAACCAA
ATACGATTGACCTTCTGCTAAATGTGTGACCAACAACAACAGCAACAACA
TTGATCCTCCCAATGGGGGGGGGGGGCGTGTGTTTGTGTGTGTGCACATC
AAGTGACTTATAATATTTTTGACTCACGCGTGATTTTCTAGGATCCATTT
ATCGGCTCCAATATATGGCCGAGGTTAGGTATGAGTGGGACATACAAAGA
CGAAATGGCCTCGAGTCGAGTCGATGCTCGACGGCCGCAGCGTTGTGTAG
CAAGTACTCTAAGAAATTGTTGAAGTTGCGATGCCAGCGAGGATGTCCTG
CCTGCAACCTATTTCCTTCTTACTCCGGCCCGTTCCCCGAACAATCCGCC
TAATTAACGGTTATAATATTTTTTCGAAACTACGCTTCGACAAAGCCATG
TCTAGCTTGACGCTTGGAGGGGAAAGGGGAGATCTTGTCTCCGACACCAC
ATTTCCGTTTTGGCGTGTTGCGGGGGGGGGGGGGGGGGGGAGCAATGCAT
GTTCACCGNNNNNNNNNNAGAATTAACGGTTGTGAGGGGGGGGGGGAGGT
GGGCGGTTGTTGTCCCCGGCTCATGTTGCCGTTTCGTCGGGTGTGGGGGG
GGGGGGGGGGGGGGGAGCAATGCATGTTCACCGATGTTATGGTGTGTCCA
AGATTAAGAATATACTCGCTCTCTTCTCTTTCCCTTCCTGGTACACCGAG
TGTAGGCGACGAGGGCAACGCAAGATCCCGAGAAAAGAGAGGATGACCAC
ACGGCCGAGGGTGCAGGCGTCGCGTCGACCGCCGCAGACGCAACAGTTGC
CGAAGAAGCTACGCAAGCCTCTGTCGACGGCGGCGAGGGCTCCGCATCGT
CCCGCGCCCGAGCTGCGGAGGAATATTCCCCGGTCGCGCCCTCGTCGGAG
CCCGCCTCGGTAACGCCTCTTCCGATGAAGGAGGAGAAACCCAAGCGGCG
AGGCCCGATGATGAACCTTTTCAAGCGGGACTCCGGGTCGCAAAGGGCGA
CTACCCTCGAGCAAGCTTTAAGCGCCGAGGTTCGCGGTAGGGCGTTCTAC
GCACGTTCCCATACACGCAATTCATTTTACAAGAAGAATGTTGGTGTGCC
ACGGCGCGGTCTCCCCCTCCCCTCTCCCCCACCAAGATGTGTGCTAGCCC
ATGGTTTGTTTTTTTCCTGAACCCGACCCGAGCAAAAAAACTGACAAGGG
GGTAATGTCAGCTGGATCCTGCGGGTTTGCCGCGTGATGATTGTCGGTGC
TTGCGTCCACAGGAGACACGGTTGAAATCTAGAGGGGTGGGCGATATATT
TAGGGGAGCGCCGCTAGGAACAGTGGTCATTTTCCCGACACCAGGCACTG
CTTGGTGGGATCAAAATATTACACCCTCGGAGGAGGAAGGGGATTATCCG
ACCCCCCCACCCCCCACCTCACTTCTCCCGCTTGACCACCAAGTACTCCC
TTTTTTTACCCTCGTGGAAAAAAGGGTATGAAAAGCCCTCCCTCCCTCCC
TCCCGCCTTACACACGTTGACGTGACATGACATGTTTACATGGGGGTGGG
GGCTGGTTTTGTTTTGTTTTTTTCTGCGTGCGTGGACGGGCGTTCCAACA
GAGCCCTGACGTTGCTGCGTTTCGACAAGCAACGGCTGCCGTGCTCGCGC
GGTCCGCTCCGAGGGACAGGTTCGTGGTCAAGGAGCCCGCAGTTCTGGAG
GAGGCGTCCATAACTCCCGTGGACGGGGAGGGAGAAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig54029:216..3754-

>mRNA_H-elongata_contig54029.12770.1 ID=mRNA_H-elongata_contig54029.12770.1|Name=mRNA_H-elongata_contig54029.12770.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig54029:216..3754- (Himanthalia elongata Himel1 dioecious)
GCCGCGCCCAGATCACCATCGGCGGGGAGTGGAAAGCCTAGGGTTTCCCC
CGAGGAGGCGGAAGCGGACACGAAGAAGATGGAGGACAGCCTCAGGAGCG
CCACGTTCGACGTGGACGAGGATCTCTTCGGAGACACCGGCCGCGCCCAG
ATCACCATCGGCGGGGAGTGGAAAGCCTAGGGTTTCCCCCGAGGAGGCGG
AAGCGGACACGAAGAAGATGGAGGACAGCCTCAGGAGCGCCACGTTCGAC
GTGGACGAGGATCTCTTCGGAGACACCGCGAGCGACTCATCGGCGAAGCC
CTCGCCACCTCCGCTGCCGGCCTCAGAGTCGTCGCTTTCTCCTGAAGCAG
CGCGAGAGCGAGCGACTCATCGGCGAAGCCCTCGCCACCTCCGCTGCCGG
CCTCAGAGTCGTCGCTTTCTCCTGAAGCAGCGCGAGAGAAAAGAGAGGAT
GACCACACGGCCGAGGGTGCAGGCGTCGCGTCGACCGCCGCAGACGCAAC
AGTTGCCGAAGAAGCTACGCAAGCCTCTGTCGACGGCGGCGAGGGCTCCG
CATCGTCCCGCGCCCGAGCTGCGGAGGAATATTCCCCGGTCGCGCCCTCG
TCGGAGCCCGCCTCGGTAACGCCTCTTCCGATGAAGGAGGAGAAACCCAA
GCGGCGAGGCCCGATGATGAACCTTTTCAAGCGGGACTCCGGGTCGCAAA
GGGCGACTACCCTCGAGCAAGCTTTAAGCGCCGAGAAAAGAGAGGATGAC
CACACGGCCGAGGGTGCAGGCGTCGCGTCGACCGCCGCAGACGCAACAGT
TGCCGAAGAAGCTACGCAAGCCTCTGTCGACGGCGGCGAGGGCTCCGCAT
CGTCCCGCGCCCGAGCTGCGGAGGAATATTCCCCGGTCGCGCCCTCGTCG
GAGCCCGCCTCGGTAACGCCTCTTCCGATGAAGGAGGAGAAACCCAAGCG
GCGAGGCCCGATGATGAACCTTTTCAAGCGGGACTCCGGGTCGCAAAGGG
CGACTACCCTCGAGCAAGCTTTAAGCGCCGAGAGCCCTGACGTTGCTGCG
TTTCGACAAGCAACGGCTGCCGTGCTCGCGCGGTCCGCTCCGAGGGACAG
GTTCGTGGTCAAGGAGCCCGCAGTTCTGGAGGAGGCGTCCATAACTCCCG
TGGACGGGGAGGGAGAAGCGAGCCCTGACGTTGCTGCGTTTCGACAAGCA
ACGGCTGCCGTGCTCGCGCGGTCCGCTCCGAGGGACAGGTTCGTGGTCAA
GGAGCCCGCAGTTCTGGAGGAGGCGTCCATAACTCCCGTGGACGGGGAGG
GAGAAGCG
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