mRNA_H-elongata_contig53937.12757.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: D8LPN6_ECTSI (GDT1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN6_ECTSI) HSP 1 Score: 241 bits (614), Expect = 8.960e-78 Identity = 137/165 (83.03%), Postives = 149/165 (90.30%), Query Frame = 1
Query: 4 ALLAAAAATTSQILPHAAVAA-ENTLPLVSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEGKKTTW 495
ALLA A A + Q+LPHAAVAA E +P+ SAAV LVE+LTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVL+GLAFHSVPSVFTSGLPLDD+IAAAAFLYFG+ TLKDAY LP DSN+GI EE+AEAEES+KE+EGKKT W
Sbjct: 95 ALLALAGAVSCQLLPHAAVAATETAVPIASAAVDGTLVERLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 259
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A6H5L6M0_9PHAE (GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M0_9PHAE) HSP 1 Score: 241 bits (614), Expect = 1.250e-76 Identity = 137/165 (83.03%), Postives = 149/165 (90.30%), Query Frame = 1
Query: 4 ALLAAAAATTSQILPHAAVAA-ENTLPLVSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEGKKTTW 495
ALLA A A + Q+LPHAAVAA E +P+ SAAV LVE+LTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVL+GLAFHSVPSVFTSGLPLDD+IAAAAFLYFG+ TLKDAY LP DSN+GI EE+AEAEES+KE+EGKKT W
Sbjct: 94 ALLALAGAVSCQLLPHAAVAATETAVPIASAAVDGTLVERLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 258
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A836CPU7_9STRA (GDT1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPU7_9STRA) HSP 1 Score: 155 bits (393), Expect = 2.720e-43 Identity = 90/146 (61.64%), Postives = 109/146 (74.66%), Query Frame = 1
Query: 10 LAAAAATTSQILPHAAVAAENTLPLVSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKA 447
L AA A S LP AA AA ++ A+ + + TS+GF QAFSLVFVSEIGDKTFFIA LLAAKTSRLISFAGS+ AL+VMTVL+ L+G+AFHSVPS T+G+P DD IA AAFLYFG++TL+DA ++P D N G+ E A
Sbjct: 100 LVAAVALLSHALPAAAAAAVTAGAPLTGAIADGTLTEATSNGFVQAFSLVFVSEIGDKTFFIAGLLAAKTSRLISFAGSIAALSVMTVLSCLIGVAFHSVPSTLTNGIPFDDYIAVAAFLYFGLVTLRDASQIPDDDNSGMEAEAA 245
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A7S2U7L4_9STRA (GDT1 family protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7L4_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.760e-36 Identity = 75/130 (57.69%), Postives = 101/130 (77.69%), Query Frame = 1
Query: 112 VEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEGKK--TTW 495
++ L+ +GF+QAFSLVFVSEIGDKTFFIA LLA KTSRLISF GS+GALAVMT+++VL+G FH+VPS + GLPLDD+ A AAF +FG+ TLK+A ++ + ++EE A+AEE+++ + K T W
Sbjct: 156 LDSLSQTGFYQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFIGSIGALAVMTIISVLIGQIFHAVPSGLSQGLPLDDIAAVAAFAFFGIKTLKEAIEMDEEGVSAMDEEFADAEEAVEGSDSIKQITAW 285
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: W7TMF8_9STRA (GDT1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMF8_9STRA) HSP 1 Score: 137 bits (345), Expect = 5.770e-36 Identity = 74/131 (56.49%), Postives = 98/131 (74.81%), Query Frame = 1
Query: 109 LVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEG--KKTTW 495
+V KL +SGF QAFSLVFVSEIGDKTFFIA LLA KTSRLISF GS+ AL+VMT+++VL+G AFH++P G D +A AAF YFG+ TLKD+Y + + G++EE+AEAE++++E ++T W
Sbjct: 164 VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPW 294
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A7S2HML6_9STRA (GDT1 family protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HML6_9STRA) HSP 1 Score: 134 bits (338), Expect = 4.060e-35 Identity = 79/140 (56.43%), Postives = 102/140 (72.86%), Query Frame = 1
Query: 91 AAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEG---INEEKAEAEESIKEIEG--KKTTW 495
AA S +EK+ +GF+QAFSLVFVSEIGDKTFFIA LLA KTSR +S GSVGALAVMT+++VL+G FH+VPS G+PLDDV A AF +FG TLK+++ D EG ++EE AEAEE+++E + ++T W
Sbjct: 137 AASASSFMEKVAETGFYQAFSLVFVSEIGDKTFFIAGLLAMKTSRFVSLVGSVGALAVMTIISVLIGQIFHAVPSGIAQGIPLDDVAAVLAFAFFGFKTLKESF----DMEEGESVMDEELAEAEETVEESDTIRQRTAW 272
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A7S1CXU9_CYCTE (GDT1 family protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXU9_CYCTE) HSP 1 Score: 133 bits (334), Expect = 9.190e-35 Identity = 72/125 (57.60%), Postives = 98/125 (78.40%), Query Frame = 1
Query: 91 AAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESI 465
A+ + L + LT +GF+QAFSLVF+SEIGDKTFFIA LLA KTSR++S+ GS+GALAVMT+L+VL+G FH+VP+ G+PLDDV A AF +FG+ TLK+A ++ D + ++EE AEAEE++
Sbjct: 110 ASTAASLFDSLTETGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSRVVSYLGSMGALAVMTILSVLIGQIFHAVPAGIAQGIPLDDVAAVLAFAFFGLKTLKEAIEMDSDGST-MDEEFAEAEETV 233
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A8J6C509_DIALT (GDT1 family protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C509_DIALT) HSP 1 Score: 132 bits (333), Expect = 1.190e-34 Identity = 71/140 (50.71%), Postives = 98/140 (70.00%), Query Frame = 1
Query: 76 LPLVSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEGKKTTW 495
L A++ P+ L S FFQA SL+FVS++GDKTFFIA +LAAKTSRL++F G+ GALAVMTV++V +G FH+VP+ FT G+P+DD+IA A+F YFG+ +L DA + + G+ E+ EAEE + I K+ W
Sbjct: 93 LASAGASLVEPVTRSLLDSPFFQALSLIFVSDLGDKTFFIATILAAKTSRLLTFVGAAGALAVMTVISVAIGQVFHAVPTGFTRGIPIDDIIAIASFSYFGLKSLADAAAIEDGDDSGMAAEQREAEEELAAIGDKRGRW 232
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A7S1FYG6_9STRA (GDT1 family protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYG6_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.700e-34 Identity = 76/139 (54.68%), Postives = 100/139 (71.94%), Query Frame = 1
Query: 85 VSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEGKK--TTW 495
++ A + +E S+GF+QAFSLVF+SEIGDKTFFIA LLA KTS+ +SF GS+GALAVMTV++ ++G FH+VPS T GLPLDDV A AF +FG TLKD+Y L D ++EE A+AE++++ E K T W
Sbjct: 139 IAGAPAASFIESFASTGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSKFVSFVGSLGALAVMTVISCILGQIFHAVPSGITQGLPLDDVAAVVAFAFFGFKTLKDSYDLE-DGESVMDEELADAEDAVEGSETIKQVTPW 276
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A7S2K988_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K988_9STRA) HSP 1 Score: 132 bits (331), Expect = 9.680e-34 Identity = 73/130 (56.15%), Postives = 97/130 (74.62%), Query Frame = 1
Query: 76 LPLVSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESI 465
L +S A S +V + + SGF+QAFSLVF+SEIGDKTFFIA LLA KTSRL+SF GS+GALA MTVL+VL+G FH+VP+ G+PLDDV A AF +FG+ TLK+A + ++ ++EE EA+E++
Sbjct: 176 LDSMSVADASAMVGRFSESGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSRLVSFIGSMGALAAMTVLSVLIGQIFHAVPAGIAQGIPLDDVAAVLAFTFFGLKTLKEASDMDPEAGSVMDEEFEEAQEAV 305 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53937.12757.1 >prot_H-elongata_contig53937.12757.1 ID=prot_H-elongata_contig53937.12757.1|Name=mRNA_H-elongata_contig53937.12757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp AALLAAAAATTSQILPHAAVAAENTLPLVSAAVGSPLVEKLTSSGFFQAFback to top mRNA from alignment at H-elongata_contig53937:403..900- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53937.12757.1 ID=mRNA_H-elongata_contig53937.12757.1|Name=mRNA_H-elongata_contig53937.12757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at H-elongata_contig53937:403..900- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53937:403..900- >mRNA_H-elongata_contig53937.12757.1 ID=mRNA_H-elongata_contig53937.12757.1|Name=mRNA_H-elongata_contig53937.12757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig53937:403..900- (Himanthalia elongata Himel1 dioecious)back to top |