mRNA_H-elongata_contig53871.12747.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53871.12747.1
Unique NamemRNA_H-elongata_contig53871.12747.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Match: D8LS54_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS54_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 2.600e-60
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 1 
Query:    1 MIPPHNSLVKYNNAVLVSTTTNNHDSKGGKKRAQAPAVERHTSQTEDILNSILPPREWTDEGQLWVQYVSSTPATRLDVTNLQEKLDQKLQQRQARETGICPVREELYSQCFGE 342
            MIPPHNSLVKY+N +LVSTT  N   KG KK+ QAP VER +SQTEDILNSILPPREWTD+GQLWVQYVSSTPATRLDVTNLQE+LDQKLQQRQARETGICPVREELYSQCF E
Sbjct:    1 MIPPHNSLVKYDNPILVSTT-GNRGGKGAKKKGQAPTVERPSSQTEDILNSILPPREWTDDGQLWVQYVSSTPATRLDVTNLQEQLDQKLQQRQARETGICPVREELYSQCFDE 113
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BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Match: A0A7S2XZP0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZP0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.980e-56
Identity = 91/114 (79.82%), Postives = 101/114 (88.60%), Query Frame = 1 
Query:    1 MIPPHNSLVKYNNAVLVSTTTNNHDSKGGKKRAQAPAVERHTSQTEDILNSILPPREWTDEGQLWVQYVSSTPATRLDVTNLQEKLDQKLQQRQARETGICPVREELYSQCFGE 342
            MIPPHNSLVKY+N +LVSTT +    KG KKR+Q   VER T+QTEDILNSILPPREWT++GQLWVQYVSSTPATRLDV NLQE+LDQKLQQRQARETGICP+REELY+QCF E
Sbjct:    1 MIPPHNSLVKYDNPILVSTTKDK--GKGAKKRSQLAPVERQTTQTEDILNSILPPREWTEDGQLWVQYVSSTPATRLDVINLQEQLDQKLQQRQARETGICPIREELYAQCFDE 112
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BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Match: A0A7S2C1N4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1N4_9STRA)

HSP 1 Score: 174 bits (442), Expect = 9.110e-53
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1 
Query:    1 MIPPHNSLVKYNNAVLVSTTTNNHDSKGGKKRAQA-PAVERHTSQTEDILNSILPPREWTDEGQLWVQYVSSTPATRLDVTNLQEKLDQKLQQRQARETGICPVREELYSQCFGE 342
            MIPPH SLVKY+NA+LVSTT      K  KK+ Q+ P VER ++QTEDILNSILPPREWT++GQLWVQYVSSTPATRLDV NLQE+LD+KLQQRQARETGICPVREELY+QCF E
Sbjct:    1 MIPPHESLVKYDNAILVSTTKEKQ--KNSKKKQQSLPPVERQSTQTEDILNSILPPREWTEDGQLWVQYVSSTPATRLDVINLQEQLDRKLQQRQARETGICPVREELYAQCFDE 113
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BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Match: A0A7S2SN15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN15_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.410e-52
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1 
Query:    1 MIPPHNSLVKYNNAVLVSTTTNNHDSKGGKKRAQAPAVERHTSQTEDILNSILPPREWTDEGQLWVQYVSSTPATRLDVTNLQEKLDQKLQQRQARETGICPVREELYSQCFGE 342
            M PPH+SLVKY+NA+LVSTT        GKK  Q P VER  +QTEDILNSILPPREWT++GQLWVQYVSSTPATRLDV  LQE+LD+KLQQRQARETGICP+REELY+QCF E
Sbjct:   15 MNPPHDSLVKYDNAILVSTTKEKQKKSKGKKGQQLPPVERQGTQTEDILNSILPPREWTEDGQLWVQYVSSTPATRLDVITLQEQLDRKLQQRQARETGICPIREELYAQCFDE 128
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BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Match: F0XX65_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX65_AURAN)

HSP 1 Score: 167 bits (423), Expect = 7.060e-50
Identity = 86/118 (72.88%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:    1 MIPPHNSLVKYNNAVLVSTTTNNHDSKGGKKRAQAPA----VERHTSQTEDILNSILPPREWTDEGQLWVQYVSSTPATRLDVTNLQEKLDQKLQQRQARETGICPVREELYSQCFGE 342
            MIPPH+SLVKY+N +LVSTT      KGGK     P+    VER  +QTEDILNSILPPREWT++G LWVQYVSSTPATRLDV NLQE+LD+KLQQRQARETGICP+REELY+QCF E
Sbjct:    1 MIPPHDSLVKYDNPILVSTTKE----KGGKXXXTTPSSLPPVERANTQTEDILNSILPPREWTEDGTLWVQYVSSTPATRLDVINLQEQLDRKLQQRQARETGICPIREELYAQCFDE 114
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BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Match: A0A5B8N0L6_9CHLO (Light chain of dynein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0L6_9CHLO)

HSP 1 Score: 167 bits (422), Expect = 1.030e-49
Identity = 86/116 (74.14%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:    1 MIPPHNSLVKYNNAVLVSTTTNNHDSKGGKKRAQAPAVERHT--SQTEDILNSILPPREWTDEGQLWVQYVSSTPATRLDVTNLQEKLDQKLQQRQARETGICPVREELYSQCFGE 342
            MIPP  SLVKY++ VLVSTT +    KGG+K+   P VE+ +  +QTEDILNSILPPREWT++GQLWVQYVSSTPATRLDV NLQEKLDQ+LQ RQARETGICPVREELY+QCF E
Sbjct:    1 MIPPLISLVKYDSPVLVSTTKDKGKEKGGRKKKDLPPVEQKSGMTQTEDILNSILPPREWTEDGQLWVQYVSSTPATRLDVINLQEKLDQQLQLRQARETGICPVREELYAQCFDE 116
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BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Match: A0A7S0N8F2_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N8F2_9CHLO)

HSP 1 Score: 163 bits (413), Expect = 2.370e-48
Identity = 85/116 (73.28%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:    1 MIPPHNSLVKYNNAVLVSTTTNNHDSKGGKKRAQAPAVERHT--SQTEDILNSILPPREWTDEGQLWVQYVSSTPATRLDVTNLQEKLDQKLQQRQARETGICPVREELYSQCFGE 342
            MIPP  SLVKY+N VLVSTT +        K+   P VE+    SQTEDILNSILPPREWT++GQLWVQYVSSTPATRLDV NLQE+LDQ+LQQRQARETGICPVREELY+QCF E
Sbjct:    1 MIPPLQSLVKYDNPVLVSTTKDKRGKDKKSKKGPLPPVEQKPGLSQTEDILNSILPPREWTEDGQLWVQYVSSTPATRLDVINLQERLDQQLQQRQARETGICPVREELYAQCFDE 116
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BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Match: A0A836CKF3_9STRA (Axonemal dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF3_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.510e-48
Identity = 84/113 (74.34%), Postives = 93/113 (82.30%), Query Frame = 1 
Query:    7 PPHNSLVKYNNAVLVSTTTNNHDSKGGKKRAQAPAVERHTSQTEDILNSILPPREWTDEGQLWVQYVSSTPATRLDVTNLQ-EKLDQKLQQRQARETGICPVREELYSQCFGE 342
            PPH+SLVKY+  VLVSTT      K GK +AQ   +E+ T+QTEDILNSILPPREWT  GQLWVQYVSSTPATRLD+ NLQ E+LD KLQQRQARETGICPVREELY+QCF E
Sbjct:    1 PPHSSLVKYDTPVLVSTT----QGKKGKGKAQQSGLEKQTTQTEDILNSILPPREWTSNGQLWVQYVSSTPATRLDIINLQQEQLDHKLQQRQARETGICPVREELYAQCFDE 109
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BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Match: A0A250XE66_9CHLO (Uncharacterized protein n=3 Tax=Chlamydomonadales TaxID=3042 RepID=A0A250XE66_9CHLO)

HSP 1 Score: 162 bits (410), Expect = 8.940e-48
Identity = 86/117 (73.50%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    1 MIPPHNSLVKYNNAVLVSTTTNNHDSKGGK-KRAQAPAVERHT--SQTEDILNSILPPREWTDEGQLWVQYVSSTPATRLDVTNLQEKLDQKLQQRQARETGICPVREELYSQCFGE 342
            MIPP  SLVKY+N+VLVS + +    KG   K+   P VE+    +QTEDILNSILPPREWT+EGQLWVQYVSSTPATRLDV NLQEKLDQ+LQQRQARETGICPVREELY+QCF E
Sbjct:    1 MIPPLQSLVKYDNSVLVSASKDKGKGKGAPGKKGTLPPVEQKPGLTQTEDILNSILPPREWTEEGQLWVQYVSSTPATRLDVINLQEKLDQQLQQRQARETGICPVREELYAQCFDE 117
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BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Match: A0A830HMA8_9CHLO (28 kDa inner dynein arm light chain, axonemal n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HMA8_9CHLO)

HSP 1 Score: 158 bits (400), Expect = 1.950e-46
Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:    1 MIPPHNSLVKYNNAVLVSTTTNNHDSKGGKKRAQAPAVER--HTSQTEDILNSILPPREWTDEGQLWVQYVSSTPATRLDVTNLQEKLDQKLQQRQARETGICPVREELYSQCFGE 342
            MIPP  SLVKY++ VLVST   N D KG K + + P VE   + + TEDILNSILPPREWT+EGQLWVQYV+STPATRLDV NLQE LD +LQQRQARETGICPVREELY+QCF E
Sbjct:    1 MIPPLQSLVKYDSPVLVST---NKDKKGAKGKGKLPPVETKPNLTPTEDILNSILPPREWTEEGQLWVQYVASTPATRLDVINLQESLDLQLQQRQARETGICPVREELYAQCFDE 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53871.12747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS54_ECTSI2.600e-6085.09p28, 28 kDa light chain of axonemal inner dynein a... [more]
A0A7S2XZP0_9STRA3.980e-5679.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2C1N4_9STRA9.110e-5377.39Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SN15_9STRA1.410e-5275.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0XX65_AURAN7.060e-5072.88Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A5B8N0L6_9CHLO1.030e-4974.14Light chain of dynein n=1 Tax=Chloropicon primus T... [more]
A0A7S0N8F2_9CHLO2.370e-4873.28Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A836CKF3_9STRA5.510e-4874.34Axonemal dynein light chain n=1 Tax=Tribonema minu... [more]
A0A250XE66_9CHLO8.940e-4873.50Uncharacterized protein n=3 Tax=Chlamydomonadales ... [more]
A0A830HMA8_9CHLO1.950e-4672.4128 kDa inner dynein arm light chain, axonemal n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53871contigH-elongata_contig53871:789..1940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.5e-40
Seed eggNOG ortholog44056.XP_009032194.1
Preferred nameIDA4
KEGG koko:K10410
KEGG Pathwayko05016,map05016
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045504,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG4001@1,KOG4001@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930877.7363262-CDS-H-elongata_contig53871:788..9551622930877.7363262-CDS-H-elongata_contig53871:788..955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53871 789..955 +
1691679608.2527697-CDS-H-elongata_contig53871:788..9551691679608.2527697-CDS-H-elongata_contig53871:788..955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53871 789..955 +
1622930877.7500012-CDS-H-elongata_contig53871:1750..19401622930877.7500012-CDS-H-elongata_contig53871:1750..1940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53871 1751..1940 +
1691679608.2748299-CDS-H-elongata_contig53871:1750..19401691679608.2748299-CDS-H-elongata_contig53871:1750..1940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53871 1751..1940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53871.12747.1prot_H-elongata_contig53871.12747.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53871 789..1940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53871.12747.1

>prot_H-elongata_contig53871.12747.1 ID=prot_H-elongata_contig53871.12747.1|Name=mRNA_H-elongata_contig53871.12747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MIPPHNSLVKYNNAVLVSTTTNNHDSKGGKKRAQAPAVERHTSQTEDILN
SILPPREWTDEGQLWVQYVSSTPATRLDVTNLQEKLDQKLQQRQARETGI
CPVREELYSQCFGEYTGR*
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mRNA from alignment at H-elongata_contig53871:789..1940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53871.12747.1 ID=mRNA_H-elongata_contig53871.12747.1|Name=mRNA_H-elongata_contig53871.12747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1152bp|location=Sequence derived from alignment at H-elongata_contig53871:789..1940+ (Himanthalia elongata Himel1 dioecious)
ATGATTCCACCCCACAACTCATTGGTAAAGTATAACAACGCGGTGCTTGT
GAGTACGACCACCAATAATCACGACAGCAAAGGAGGAAAGAAGAGGGCGC
AGGCCCCGGCCGTCGAGCGACACACCTCCCAAACGGAGGATATTCTCAAC
TCCATCCTTCCCCCAAGGTGCGCGACATGTCCTATGTAGACAACGTGGCG
TGGATCGCGTGCCGTCTTACCACGACGCCGTGGGGATGAAGGTTATCATT
CTCCGATGGCAAGCCGTCATTATCTTGCCACTTTTCTTTGGTGTTGATGC
CGCATCCGTCTAGTAGGTGATTCCGTGGCAACTCTTTGCTCAAATGAACA
TACAGAGCTAGTTTGTGAACCAATTCTGGGGCTTCTCTTCCGTCTTTGAT
ATTCCAACTTCGATTCTACCGGTGGCCGTGGTAAATAGGAGCTGATCATG
GGAAATACAAACAACGTACCAGGTAGTATGCCGCGGTGTTTCCGTTTTTA
AAACGCTTCGTAATTTTTATTTAAAACATATGAACTCATTAAACCCTCCG
AACATCCACCACACCTTCTTAGTTCTATGAGAGGTGTAGTCCAGAGGACA
GGACCAATTATCGTCAGGTTCGAATGTGGACATTGCTGCATTTAAGCACA
AAATCGTCATAATATGTGATTATTTGTGTTCCACGGTGGTAGACGCTCGT
GCAAAAAATCGCTAGTTTTATGAGTTGGCTGTGGTGGGGATGCTGCCATC
ATAAAAATGTCGCGTTTTTGAGCGCACAGCGAGGCACGAAGTTGTCTGTT
TCCCGGGCGACGAATCGACCACGCCTCACCCAGACGTTCAATGATAACTA
AATGTCTCTCAAGATAATTTATTCTGGTCTTCGCAAACACTATTATTATT
ATAGAGTCGCATTTTAGACTAAACATCGGTTCGTCTTATTCGACGTTGTC
TCGCCGCCAAAGGGAATGGACGGACGAAGGACAGCTGTGGGTGCAGTACG
TCTCAAGCACACCGGCGACTCGTCTAGACGTGACCAATCTGCAGGAAAAG
TTGGACCAGAAGTTGCAGCAGCGACAGGCCAGAGAGACAGGAATTTGCCC
GGTTAGGGAGGAGCTGTATTCGCAGTGCTTTGGTGAGTACACAGGGCGAT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig53871:789..1940+

>mRNA_H-elongata_contig53871.12747.1 ID=mRNA_H-elongata_contig53871.12747.1|Name=mRNA_H-elongata_contig53871.12747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig53871:789..1940+ (Himanthalia elongata Himel1 dioecious)
ATGATTCCACCCCACAACTCATTGGTAAAGTATAACAACGCGGTGCTTGT
GAGTACGACCACCAATAATCACGACAGCAAAGGAGGAAAGAAGAGGGCGC
AGGCCCCGGCCGTCGAGCGACACACCTCCCAAACGGAGGATATTCTCAAC
TCCATCCTTCCCCCAAGATGATTCCACCCCACAACTCATTGGTAAAGTAT
AACAACGCGGTGCTTGTGAGTACGACCACCAATAATCACGACAGCAAAGG
AGGAAAGAAGAGGGCGCAGGCCCCGGCCGTCGAGCGACACACCTCCCAAA
CGGAGGATATTCTCAACTCCATCCTTCCCCCAAGGGAATGGACGGACGAA
GGACAGCTGTGGGTGCAGTACGTCTCAAGCACACCGGCGACTCGTCTAGA
CGTGACCAATCTGCAGGAAAAGTTGGACCAGAAGTTGCAGCAGCGACAGG
CCAGAGAGACAGGAATTTGCCCGGTTAGGGAGGAGCTGTATTCGCAGTGC
TTTGGTGAGTACACAGGGCGATGAGGAATGGACGGACGAAGGACAGCTGT
GGGTGCAGTACGTCTCAAGCACACCGGCGACTCGTCTAGACGTGACCAAT
CTGCAGGAAAAGTTGGACCAGAAGTTGCAGCAGCGACAGGCCAGAGAGAC
AGGAATTTGCCCGGTTAGGGAGGAGCTGTATTCGCAGTGCTTTGGTGAGT
ACACAGGGCGATGA
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