mRNA_H-elongata_contig53799.12738.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53799.12738.1
Unique NamemRNA_H-elongata_contig53799.12738.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Match: D7G1B5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B5_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 2.130e-107
Identity = 169/237 (71.31%), Postives = 193/237 (81.43%), Query Frame = 1
Query:    1 AKANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRLTVKEPHRAPATSSSTXXXXXDSARESG-----------TDKNFTFKQSSKLIFQKPLIQLLMLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSFLGGYAADRWEKAGETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFFLFLEYLVAECWFGPAISVLQKSLPPRVR 678
            A+ANG+FAFGVYVGGGLSSLSI MA+ IGWRGSA+ VA +GL+LS LVR TV+EP R PA ++         A E G            +K++T ++S+KLIF  PLI LL+ GGM+RFMAGYAIGSYLPDF+SQIYP DNTIYSYLNASVVSVGGALSS+ GGYAADRWEKAG+ RAR+YIPAIGALLGAPTFFLVI  PNFY +MFFLF+EYLVAECWFGPAISVLQK+LP RVR
Sbjct:  153 AQANGVFAFGVYVGGGLSSLSIAMAQGIGWRGSAFTVAGYGLLLSLLVRFTVREPARTPAVTAPAPANRTSEAEEGGGYAPTNGSSGDAEKDYTARESAKLIFGNPLIVLLIFGGMVRFMAGYAIGSYLPDFFSQIYPDDNTIYSYLNASVVSVGGALSSYAGGYAADRWEKAGQHRARMYIPAIGALLGAPTFFLVIVTPNFYGAMFFLFVEYLVAECWFGPAISVLQKALPARVR 389          
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Match: A0A7S2XUC5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUC5_9STRA)

HSP 1 Score: 230 bits (586), Expect = 9.680e-70
Identity = 119/226 (52.65%), Postives = 153/226 (67.70%), Query Frame = 1
Query:    1 AKANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRLTVKEPHRAPATSSSTXXXXXDSARESGTDKNFTFKQSSKLIFQKPLIQLLMLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSFLGGYAADRWEKAGETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFFLFLEYLVAECWFGPAISVLQKSLPPRVR 678
            AKANGIFAFGVYVGGGL S+SI MA  +GWRG+ + VA FG +L+ +V  T+KEP R+    +ST       ++ S  D+  +  ++   IF   L+  + +   +RFM GYAIGSY+  F++  YP  NTIYSYLNASVV+ GGA SSF GG+AAD WEK+G+  AR++IPAIGA+   P   + +   NFY SM  LF EYL AECWFGP +SVLQ +L PRVR
Sbjct:  172 AKANGIFAFGVYVGGGLGSMSIAMALGMGWRGATFIVAIFGFILAGVVLSTIKEPQRSAGDKASTK------SQSSSDDEKVSVVEAFNEIFSSSLVVTIFIASSIRFMGGYAIGSYMAVFFADSYPEYNTIYSYLNASVVACGGAASSFFGGWAADEWEKSGQRNARVWIPAIGAIASLPFMMMCVLSGNFYLSMAGLFFEYLFAECWFGPIMSVLQSALSPRVR 391          
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Match: A0A7S2Y1D3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1D3_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.040e-59
Identity = 104/225 (46.22%), Postives = 149/225 (66.22%), Query Frame = 1
Query:    1 AKANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRLTVKEPHRAPATSSSTXXXXXDSARESGTDKNFTFKQSSKLIFQKPLIQLLMLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSFLGGYAADRWEKAGETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFFLFLEYLVAECWFGPAISVLQKSLPPRV 675
            A ANGIFA+GVY+GGGLSSLSI MA+ IGWR + + VA  G VL+A+  LTV+EP R             D   ++  +++ +  +S K +    LI  L+  G +R++ G AI +YLP ++   +P  +  YSY+NASVV+ GGALSS++GG+ ADRWE +G   AR+++PA+G+LL  P   L +A  NF+ +M  L+ E+L AECWFGP +SV+Q +LPPR+
Sbjct:  151 ATANGIFAWGVYLGGGLSSLSITMAESIGWRSTTFLVAMVGFVLAAVFVLTVQEPTR------------HDVPNDTPKEESLSMIESFKKVLSNRLIITLLAAGTMRYIGGNAISAYLPVYFDAAFPEQSKAYSYINASVVAFGGALSSYMGGWIADRWEMSGGRHARVWVPALGSLLACPFVVLTMAASNFHVAMMGLYFEFLFAECWFGPTMSVIQSTLPPRL 363          
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Match: A0A836CG38_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG38_9STRA)

HSP 1 Score: 202 bits (514), Expect = 2.020e-59
Identity = 110/229 (48.03%), Postives = 142/229 (62.01%), Query Frame = 1
Query:    1 AKANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRLTVKEPHRAPATSSSTXXXXXDSARESGTDKN---FTFKQSSKLIFQKPLIQLLMLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSFLGGYAADRWEKAGETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFFLFLEYLVAECWFGPAISVLQKSLPPRVR 678
            A+ANG+FAFG+YVGGG+ SLS+ MA   GWR + Y  A  G  L+ L R TV+EP R+ A   S                     +  ++++ I  + L+  LML   +RFMAGY+IGSY+P FY   +P D  +YSYLNASVV+VGGALS++ GG AAD+W  +G+ RA L +PAIGA    P   L +  P+F  SM  LFLEYL AECWFGPA+S LQ +LP   R
Sbjct:  143 AEANGVFAFGIYVGGGMGSLSLAMAMAFGWRATCYAAAASGGALALLTRATVREPPRSGAXXXSLKPHVEQPLXXXXXXXXXXALSLAEAARAIAGRRLVVALMLASCVRFMAGYSIGSYMPVFYRARFPDDAALYSYLNASVVAVGGALSAYFGGLAADKWGASGQRRANLLVPAIGAAAAVPALALALYAPSFGLSMAGLFLEYLAAECWFGPAMSALQGALPAGAR 371          
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Match: A0A835YUX0_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX0_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.850e-49
Identity = 91/228 (39.91%), Postives = 134/228 (58.77%), Query Frame = 1
Query:    1 AKANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRLTVKEPHRAPATSSSTXXXXXDSARESGTDK--NFTFKQSSKLIFQKPLIQLLMLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSFLGGYAADRWEKAGETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFFLFLEYLVAECWFGPAISVLQKSLPPRVR 678
            A+ANG++A G+Y+G  + S S+ +A  +GWR   Y  A  GLVL+ L+ ++V+EP R    + +       S            T  Q+ + +  + L+  ++   M+R+MAGY IG+++P FY   +P D  +YSYLNAS++++GGA+S+++GG  ADRW  AG+ RA L IP  GA    P     +  P+F  SM  LF EYL AE W GPA+S LQ +LPP  R
Sbjct:  147 AEANGVYAVGMYMGASMGSFSLSIAMAVGWRNVCYGCAASGLVLAMLLLMSVREPQRVKKLADAACGAPVASXXXXXXXXXLKLTLPQALRAVLSRRLVLAIIAAAMVRYMAGYTIGTFMPVFYGARFPDDADVYSYLNASIIAIGGAVSAYVGGRTADRWAAAGQRRAYLLIPGAGAAAAVPLLAAALYAPSFGLSMAALFAEYLCAEVWSGPAVSALQGALPPGAR 374          
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Match: A0A7S4E4V1_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4V1_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.110e-45
Identity = 87/222 (39.19%), Postives = 133/222 (59.91%), Query Frame = 1
Query:    1 AKANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRLTVKEPHRAPATSSSTXXXXXDSARESGTDKNFTFKQSSKLIFQKPLIQLLMLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSFLGGYAADRWEKAGETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFF-LFLEYLVAECWFGPAISVLQKSL 663
            ++ANG+FA GVY+GGG++S+ I M+  +GWR + + +AT G  +S +  ++++EP R    S             +   KNF   Q+   IF   L+ L+     LR+M GY I  YLP  ++ ++P+ +  YSY+NA VV+ GG +SS+LGG  AD+W +A E RAR+Y+P  G     P   +     +FY S+F  LF+EYL+AECWFGP ++ +Q +L
Sbjct:  165 SQANGLFACGVYIGGGMASMCISMSADLGWRNTCFLIATIGFCISVIEVVSIREPQRPSRKSKLPALNAEGGHIPAAAKKNFV--QAIWAIFSNELVVLVFAASSLRYMGGYVIAGYLPALFASVFPNFDDQYSYINAYVVAGGGFISSWLGGMLADKW-RAVEPRARMYLPVCGCFGSLPFMAICCLASDFYVSIFLGLFVEYLIAECWFGPVVATMQSAL 383          
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Match: A0A7S3PPS4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PPS4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.660e-45
Identity = 95/258 (36.82%), Postives = 140/258 (54.26%), Query Frame = 1
Query:    1 AKANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRLTVKEPHRA-PATSSS-------------------------------TXXXXXDSARESGTDKNFTFKQSSKLIFQKPLIQLLMLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSFLGGYAADRWEKAGETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFFLFLEYLVAECWFGPAISVLQKSLPPRVR 678
            A ANGIF+ GVYVGGGLSSLS++++  IGWR +++ ++     +        KEP  A P  S +                                     DSA  S   K    KQ+++++F    +  + +   LRF  G+AI S+LP F+ + YP +N +Y  LNA VVSVGGALS+ LGG+  D++ +  + R +++IPA+  +LG   FF+V+   NFY SM  LF EY++AECWFGP I+++Q  +P   R
Sbjct:  193 AFANGIFSLGVYVGGGLSSLSLLLSTCIGWRETSFVISICSFAIGLGTMALTKEPRYANPKVSQAENDITQHELLLSDNEGTRGRGYEAIESSLDENTDELNDSAVNSLDVKKAALKQAARMVFSDSCVCFIFVASGLRFFGGFAIASFLPIFFKRKYPDENVLYGTLNAFVVSVGGALSATLGGWVTDKYSQVFDERVKVWIPAVAFVLGFGPFFVVLFADNFYLSMAALFFEYILAECWFGPVIAIIQNRIPAEAR 450          
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Match: A0A7S2WU90_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU90_9STRA)

HSP 1 Score: 154 bits (390), Expect = 9.440e-41
Identity = 98/249 (39.36%), Postives = 133/249 (53.41%), Query Frame = 1
Query:    4 KANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRLTVKEPHRA------------PATSSSTXXXXXDSARESGTDKNFTFKQSSKLIFQKPLIQLLMLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSFLGGYAADRWEKA-----------GETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFF-LFLEYLVAECWFGPAISVLQKSLPPRVR 678
            +ANGIFA GVYVGGGL+S+S  +A+++GWR + Y  A  G +L  L+  T+ EP R              A   S      +   E  + +  T     K +   P   +L +   +RFM GYAI  YLP FY   + S +T YSY+NA VV+ GG  SS+ GG     W+++           G  +A  Y+P IGALLG P   +     +FY S+   LFLEYLVAECWFGP +S LQ+ +PP +R
Sbjct:  152 QANGIFASGVYVGGGLASISESLAEEMGWRYTCYLTAAVGGLLCTLLLCTMSEPPRQNLDEMDKIEEEDEAVQGSQEATEVEEQAEKPSQQQSTLSVI-KWLLTDPHTLVLFIAASVRFMGGYAIAGYLPYFYDYAFSSYSTQYSYINAYVVAFGGFCSSWGGGKITTLWKESANHEDPSRRWPGAEKANYYVPMIGALLGIPFICICCLASDFYVSLCVGLFLEYLVAECWFGPYMSALQEGVPPTMR 399          
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Match: D8LBY9_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBY9_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 5.360e-40
Identity = 86/235 (36.60%), Postives = 134/235 (57.02%), Query Frame = 1
Query:    7 ANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRLTVKEPHRAPATSSSTXXXXXDSARESGTDKNF-----------TFKQSSKLIFQKPLIQLLMLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSFLGGYAADRWEKAGETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFFLFLEYLVAECWFGPAISVLQKSLPPRVR 678
            AN I++ GVY+GG L+SLS+++   IGWR S   VA  G+ ++ L  L ++EP R   T+        D+      DK             +F+++  ++F+   ++L+ L    RF AG+ IG +   F+   +PS+++ Y+ LNA VV+ GG LSSFLGG  +D++    + R R ++P  G +L  P +  V+   NFY S+ FL  EY+ AECWFG  +++LQ+ LPP VR
Sbjct:  276 ANSIYSSGVYLGGALASLSLLLNGAIGWRDSHLVVAAVGVAVAVLSALLIQEPTREFPTAGEPGAGAGDNTAAKSGDKGGGGAGEESEERESFQEALGIVFKSNTVRLVFLATAFRFCAGFGIGVWCAPFFRGRFPSNSSEYAVLNAFVVAGGGLLSSFLGGVISDKYSVE-DPRVRAWVPMAGCILAIPCWIGVVTGTNFYVSLAFLLAEYIAAECWFGGTVTILQEGLPPNVR 509          
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Match: A0A2R5G269_9STRA (Hexuronate transporter n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G269_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.470e-39
Identity = 93/271 (34.32%), Postives = 143/271 (52.77%), Query Frame = 1
Query:    1 AKANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRLTVKEPH----RAPATSSSTXXXXXDSARESGTD-----------------------------------------KNFTFKQSSKLIFQKPLIQLLMLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSFLGGYAADRWEKAGETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFFLFLEYLVAECWFGPAISVLQKSLPPRVR 678
            A+ANGI++FG+Y+G GLSSLS++MA+  GWR ++  +    ++ S L+ + V EP      APA  ++T     + A  SG++                                         K  +   +  +I        L +   LRF+ G+A+G++LP ++++ +PS ++ YS LNA ++SV GA S++LGG+ +DRW +  + R   ++PAI    G   F  V+   NFY +MF L LEYL+AE WFGPAIS+LQ  LP  VR
Sbjct:  182 AQANGIYSFGIYLGNGLSSLSLVMAQLFGWRAASLVIGFASMLSSLLLAVFVSEPRFDATAAPAAVAATVSTSSEQASVSGSNHGAQTPLLQDHDHHREGESHADAGEHDEECELPXXXPVTQGKAMSLGATLSIIVSDRPTLFLFIAAPLRFLGGFAVGAFLPQYFNRRFPSYSSQYSTLNAILLSVAGASSAYLGGFLSDRWRRT-DPRGAAWVPAIAGACGFIPFLGVLFADNFYLAMFSLMLEYLIAEGWFGPAISILQSRLPGTVR 451          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53799.12738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1B5_ECTSI2.130e-10771.31MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2XUC5_9STRA9.680e-7052.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2Y1D3_9STRA1.040e-5946.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CG38_9STRA2.020e-5948.03Major facilitator superfamily domain-containing pr... [more]
A0A835YUX0_9STRA4.850e-4939.91Major facilitator superfamily domain-containing pr... [more]
A0A7S4E4V1_9STRA2.110e-4539.19Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3PPS4_9STRA2.660e-4536.82Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A7S2WU90_9STRA9.440e-4139.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LBY9_ECTSI5.360e-4036.60MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2R5G269_9STRA1.470e-3934.32Hexuronate transporter n=1 Tax=Hondaea fermentalgi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53799contigH-elongata_contig53799:58..3622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.5
Seed ortholog evalue6.2e-88
Seed eggNOG ortholog2880.D7G1B5
EggNOG free text desc.sphingolipid transporter activity
EggNOG OGsCOG0477@1,KOG1330@2759
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-17_003910.1
Exons5
Model size681
Cds size681
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53799.12738.1prot_H-elongata_contig53799.12738.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53799 58..3622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930876.8092184-CDS-H-elongata_contig53799:57..3171622930876.8092184-CDS-H-elongata_contig53799:57..317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53799 58..317 +
1691679607.8321364-CDS-H-elongata_contig53799:57..3171691679607.8321364-CDS-H-elongata_contig53799:57..317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53799 58..317 +
1622930876.826653-CDS-H-elongata_contig53799:1086..12231622930876.826653-CDS-H-elongata_contig53799:1086..1223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53799 1087..1223 +
1691679607.845093-CDS-H-elongata_contig53799:1086..12231691679607.845093-CDS-H-elongata_contig53799:1086..1223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53799 1087..1223 +
1622930876.8439517-CDS-H-elongata_contig53799:1578..16541622930876.8439517-CDS-H-elongata_contig53799:1578..1654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53799 1579..1654 +
1691679607.856735-CDS-H-elongata_contig53799:1578..16541691679607.856735-CDS-H-elongata_contig53799:1578..1654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53799 1579..1654 +
1622930876.8631206-CDS-H-elongata_contig53799:2916..30481622930876.8631206-CDS-H-elongata_contig53799:2916..3048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53799 2917..3048 +
1691679607.866229-CDS-H-elongata_contig53799:2916..30481691679607.866229-CDS-H-elongata_contig53799:2916..3048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53799 2917..3048 +
1622930876.8770528-CDS-H-elongata_contig53799:3546..36221622930876.8770528-CDS-H-elongata_contig53799:3546..3622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53799 3547..3622 +
1691679607.8742442-CDS-H-elongata_contig53799:3546..36221691679607.8742442-CDS-H-elongata_contig53799:3546..3622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53799 3547..3622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53799.12738.1

>prot_H-elongata_contig53799.12738.1 ID=prot_H-elongata_contig53799.12738.1|Name=mRNA_H-elongata_contig53799.12738.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
AKANGIFAFGVYVGGGLSSLSIIMAKKIGWRGSAYFVATFGLVLSALVRL
TVKEPHRAPATSSSTSSSREDSARESGTDKNFTFKQSSKLIFQKPLIQLL
MLGGMLRFMAGYAIGSYLPDFYSQIYPSDNTIYSYLNASVVSVGGALSSF
LGGYAADRWEKAGETRARLYIPAIGALLGAPTFFLVIAVPNFYASMFFLF
LEYLVAECWFGPAISVLQKSLPPRVR*
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mRNA from alignment at H-elongata_contig53799:58..3622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53799.12738.1 ID=mRNA_H-elongata_contig53799.12738.1|Name=mRNA_H-elongata_contig53799.12738.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3565bp|location=Sequence derived from alignment at H-elongata_contig53799:58..3622+ (Himanthalia elongata Himel1 dioecious)
GCGAAGGCCAACGGGATTTTTGCGTTCGGGGTTTACGTTGGGGGAGGCCT GAGCTCTCTTAGCATTATCATGGCTAAGAAAATCGGCTGGCGGGGCAGCG CGTACTTCGTGGCCACGTTTGGCCTGGTGCTCTCTGCCCTGGTGCGCTTA ACAGTGAAGGAGCCCCACCGAGCTCCGGCCACTTCGTCTTCCACGTCGTC CTCTAGGGAGGATAGCGCGCGGGAAAGCGGGACAGACAAGAACTTCACTT TCAAACAGAGGTGGAAGGCTTGTGTTTGTGAAGGAGGGGGCATACGATTT TGGTACATAGTTTAGGTGGGTTTGTCGTTGTTTCTGTTATGTTTTCGAGG ACGGTATATAGGTAGGGAGAGGGATGTTTTTTCGTGGTGGGGTTTGCTAG TTTTACGTTGTATGTTGATGAGTTAGGGAGGGAGAGAGTTTTTTTTTTTT TTTTTTTTTTTTTTGTTGGTTTTTTGTTTTTTTTTTTTGTTGTTGTGTTT TTTTTGTTTTTGTTTTGGGGGGGGTGGGTGGGGGGGGGGGGGGGTTTTTT TTTTTTTTTTTTTTTTTTGCGTGGTGCTTATGTTGTCTCTCGTGCATGTG TGCTTGACCACGGTCTCGGCGGGACTTTATAATTGCATGTTAAGGCATAT TTCCCCTCCTCCCTGCTTCCCCTCTCTTTCTACGAGCAAATAAGGCCGAT GGTTCAAAGGTATATCAATCCGCCTGGTTTTGTTTTTTACAGACTTGCGG GATTTGGCGACTTGCGCGGTATGTGCAGTGGGATAGTTTTCTCGCAACCT TGTGGCGAAGGTTTTATGTAGCTAGCAGCCGCCGCGATGCTTGAAACTCC CTTCCCCACCCCCCGATCGAGAGCCGTAACACTGCCATCGGTCCCGAAGC CTTGCATCGCTGACGCGCCCGCTCTCCCGGTGTACCCCTCTGCCGCTCTT TTTTTGTCACCTTCGCTGCCACCACGTTCCCATCATTTACTCCCTCGCTC GTCCCCCGCCCCTTGATTATTTCTTGCAGCTCGAAGCTAATTTTCCAAAA GCCACTGATTCAGCTCTTAATGCTTGGAGGGATGCTCCGGTTCATGGCGG GGTACGCCATCGGGTCCTATCTGCCGGACTTCTACAGTCAGATCTACCCT AGCGACAACACTATATGTGAGAGAGAGACGTACCATGACGTGAGATGTGT GGTGTGTGGTGTCTTGTGTGCTTGAAGCGGACAGGAGTATATTTCCATTT CGAGTCCCGCTCTCGATTTTCTTCTTGTCGTCTGGTCCTATGCTGTCCTG TCCAGGCCAAATACTCCGCGTGTGATTGGTTGCTGACGTTGGTATCGATA TGAAGTGTTTTCGTTTGTTGATTTTCAGTTTTATTGTTGATGTAGGCGTT TTTTTATAATTTGCTGTTTGTGCCCCGTATCACTGTCGAATCATACCGCA CGGGATGGGATACCTCTGGTGGTCCCGCGCATTGCTCCGCGCCCACGCCC TCCTGCGTTTCGTCTTCACAGATAGTTACCTCAACGCCTCCGTTGTGTCC GTCGGCGGAGCGCTTTCCTCGTTCTTGGGGGGTTACGCCGCCGACAGGTT GGTTATACACAAGAAGAGTACGCACGCAGCTCTCAAGAAGAGCGCTCGCT CACAAACACGCAACTAGATCCTGCTCATGCGCGGTGCTACTGTGACGTTA CATTTTTTGCGTACACTTCGTAGTTTGTTCAGGATGTAAATAGAAAAGAG ACCGCGTACATATAGATCGAAAGGAGGACGGTTAGGGGGTTCTGAAAGCG TTGGGGGTATGTGTGTGTGTGTGTGTGTGTATGTATGTTTTGCCGATCCC CAGTTTTTAAAAGTAAAATCTACAGCTTTGAATTGAAGCCTTCTCCGCAA AAAGTAAGGGCACTGTAAGGTCATTTTTCATGATTTATTTTATTTTAAAA ATATCGTCTCTTGCATCCTTTTTGCTGGGACGTCCCATTTCGCCTCGACA TTGAGGAATCCAAGACGATCTTTACGTACGTAGCAGTAGTATTGCTTACA TAGTATATTTGTGTTAAGGGGAGGCCTCCCTCCCCTACGCCGGTGTATCT TGAGCCGGAACGGGAAGGCTAAGCATCTATGGCGCGGATCCCGGGGTTTC GTATAGTAGTATCTGGGATGTTACGCCGAAGGAGGGCGGGGGAGGTAAAT TAGTAACTGGACGGGGACGAAATAAGACCCAGCTACTCGTACTTTATTTT TCTGCGCTGCCTCGAATTAATCGCATTAAATGTACGAAACGCATTAAAAC GCATGAAAGGCATTAAACGCACAGGCTGTAGAGCTCTACCGATACGAACC GACAAGACATAATATGGGATAACGCGTGGTCAAAAGTATCACACCGAAGT TATGCAAAACTAGAGTACGCCCCTCCCTCACCCACCCCCACGCCCCAAAA CACTGGAAGAAACACTGCAGACGAGAAGCCGCAAGAGCGCAATGTCGCAT CGCTCCCCCCGGTACACACGAGTAGAGTAAAGTTATACTAATTGATCGTG CGGTAATGTATTGCTGTGTTGTTTACTTAATTAACTATAATGACGTAAAG TATAGTTAAGCTACCAGTACATTATTTTTGTTTTTCCGAAGCTTGTTTTG GAGTAGCCAAAAGTGTCCTCGCCTGGTATTTCTTTACAGAACACATAAAA AGTTCCCCCCCCCCCTCTCCACTGCCCCATCCCTTTCTTCTCGAAACGTT TTCGACTTCCTTGGCACTTCTGTGTTTGTTTTTTGCGTTTCTTTTTTATA CGTTGGTGTGCGTTTTGTTTTTCATTTCTTAATTATGTTTTATGCTTTTG TTTTCCAAGGTGGGAGAAGGCTGGGGAGACCCGGGCCCGGCTGTACATAC CCGCCATCGGAGCGCTGCTTGGAGCCCCCACGTTTTTCCTCGTGATCGCT GTCCCCAACTTCTACGCCTCCATGTTCTTCCTATTCCTCGAGTGAGTTAT AGAGATTACAGGCGGTATAAGGAAGGGGTATAGGAGGGTAGGGTCGGTTT AGGTATGTAGAGACGGGAAAAGGCAAACGCTGAGGTGCTCGCATGGTGCA ACCAGCCCCCAAACTTGCGAGTATAGTATCAAGCGCTATACAATTTTGGA TTTCGACTGCTTTATACAGTAGTTCGTTTGCTTTCCCCCTCCGCGGACAC ATTGTCTGTCTGTGTGTCTCGGGTTAGGAGACGATGTGAGCAGGTAGCAG CCCCGATTCTCCTACCCATTCCACCTTTCGAGGTGTGCGCGAGCGTCGAT TCGTTTTTGATTCAGTTTGAGCATCACCGCCACTCTTTTCAAAGCCTTTG GACGCCTTTCGGGACATTATATATATATTACCTGGCACAATGTATTCATG GTCTTAGCTACACAATGTATTCATGCGAGTCTGAATATTTGGCACAATAC ACTTAATCTCCCGCTCTCTCTCTCCCTCTCTGTCTGTAGGTACCTGGTGG CGGAGTGCTGGTTCGGCCCGGCCATCTCTGTGCTCCAGAAGTCTCTCCCG CCGAGGGTCCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig53799:58..3622+

>mRNA_H-elongata_contig53799.12738.1 ID=mRNA_H-elongata_contig53799.12738.1|Name=mRNA_H-elongata_contig53799.12738.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig53799:58..3622+ (Himanthalia elongata Himel1 dioecious)
GCGAAGGCCAACGGGATTTTTGCGTTCGGGGTTTACGTTGGGGGAGGCCT
GAGCTCTCTTAGCATTATCATGGCTAAGAAAATCGGCTGGCGGGGCAGCG
CGTACTTCGTGGCCACGTTTGGCCTGGTGCTCTCTGCCCTGGTGCGCTTA
ACAGTGAAGGAGCCCCACCGAGCTCCGGCCACTTCGTCTTCCACGTCGTC
CTCTAGGGAGGATAGCGCGCGGGAAAGCGGGACAGACAAGAACTTCACTT
TCAAACAGAGGCGAAGGCCAACGGGATTTTTGCGTTCGGGGTTTACGTTG
GGGGAGGCCTGAGCTCTCTTAGCATTATCATGGCTAAGAAAATCGGCTGG
CGGGGCAGCGCGTACTTCGTGGCCACGTTTGGCCTGGTGCTCTCTGCCCT
GGTGCGCTTAACAGTGAAGGAGCCCCACCGAGCTCCGGCCACTTCGTCTT
CCACGTCGTCCTCTAGGGAGGATAGCGCGCGGGAAAGCGGGACAGACAAG
AACTTCACTTTCAAACAGAGCTCGAAGCTAATTTTCCAAAAGCCACTGAT
TCAGCTCTTAATGCTTGGAGGGATGCTCCGGTTCATGGCGGGGTACGCCA
TCGGGTCCTATCTGCCGGACTTCTACAGTCAGATCTACCCTAGCGACAAC
ACTATATCTCGAAGCTAATTTTCCAAAAGCCACTGATTCAGCTCTTAATG
CTTGGAGGGATGCTCCGGTTCATGGCGGGGTACGCCATCGGGTCCTATCT
GCCGGACTTCTACAGTCAGATCTACCCTAGCGACAACACTATATATAGTT
ACCTCAACGCCTCCGTTGTGTCCGTCGGCGGAGCGCTTTCCTCGTTCTTG
GGGGGTTACGCCGCCGACAGATAGTTACCTCAACGCCTCCGTTGTGTCCG
TCGGCGGAGCGCTTTCCTCGTTCTTGGGGGGTTACGCCGCCGACAGGTGG
GAGAAGGCTGGGGAGACCCGGGCCCGGCTGTACATACCCGCCATCGGAGC
GCTGCTTGGAGCCCCCACGTTTTTCCTCGTGATCGCTGTCCCCAACTTCT
ACGCCTCCATGTTCTTCCTATTCCTCGAGTGGGAGAAGGCTGGGGAGACC
CGGGCCCGGCTGTACATACCCGCCATCGGAGCGCTGCTTGGAGCCCCCAC
GTTTTTCCTCGTGATCGCTGTCCCCAACTTCTACGCCTCCATGTTCTTCC
TATTCCTCGAGTACCTGGTGGCGGAGTGCTGGTTCGGCCCGGCCATCTCT
GTGCTCCAGAAGTCTCTCCCGCCGAGGGTCCGGTGAGTACCTGGTGGCGG
AGTGCTGGTTCGGCCCGGCCATCTCTGTGCTCCAGAAGTCTCTCCCGCCG
AGGGTCCGGTGA
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