mRNA_H-elongata_contig5365.12720.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5365.12720.1 vs. uniprot
Match: D8LS70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS70_ECTSI) HSP 1 Score: 511 bits (1316), Expect = 3.600e-160 Identity = 410/1077 (38.07%), Postives = 487/1077 (45.22%), Query Frame = 2
Query: 17 GKERVQKGQPRALSNLLFDEGGASGKEQSGGAVDGRSPTG-----------------------WIWRGPQPPSVWYALDMSGREVGASVEIKLTVNSSAP------ASDASRSALDSPSAWQMGPY--STTVGGEDDAGPGCATGNGA----LCPLDEAL-FKLTVAVRAGALPEVDGNGTAQDDTWVLQTSDAVRVAVERVPCPSPSSGEDENAISGENSRATDDLSMRWSTTFVWSVTRPPQLRPARAGG-AGLEKGDLATTLFVVIYGETIDDAVRRTKIRGEERQGADGVVRGGDGRERGRRLA---------GGSDDAEELLWGLGVAPQVAFRYCTEEACPAEKGVCRPTRGGDEDDYVTISKCHCFYGYGGEACAYRVVSTASLIWQFLVFVCSNLAVIPGVRVALRLGHATGAAPAVVLSLAGMASALYHTCDLELTCAAGLLSRHSLQAIDFFFSFFSVVALVLHLCPMPWDEPFVPHPIHS----------------------------------------------------------------------------------------------------------SREKATATAAEDGSDGL----------------------------------AGSICSDDGSYGHLIEDAGEGEVAVAVAHEGHHVG--------------KDDDNGNDDRAVSGKEGDG----TRLAALYACLTLPLLAGATEPPTAGVNLAIVFAMCGALLAFCWWRLVVRDFRD-------------------WRAEAAAKLDPERMERDVEVSDGGAAAQGRGAFFD-------------GAGKEAV--YGPTIMPSSAWDQRDKRKGDGRGHRKKRGDGGMTRYLNSSSPRRYSPLCGRDPAVDEG--SGNADRYGGGSD-----DDSAGGDFLESLPLVPPVDLRVSAKCQRPSFGYSSGCRGGGMEDADQR-------------------QSRLGRVREVLRSLRRVTVDRGLLDWRQLCVGVAAFALGLMFSALQRAPTTINTFHLYHGAWRVLAMGSTAPLLRARRWGVVET 2455
G R+ +GQPRALSN + DEGGA+ AV G S +G W+WRGP PPS+WYAL+MSGREVGAS+EI+L+VNSSAP A+ AS SA SPSAW MGP S +VG DAG G G GA P++ A L+VA+R GALP VD NGTA++ T VL T+DA+ E P P + +A DL WSTTF W++T PP L PA GG AGL +G ATTLFVV+ GET +A R K R G G G DG+ R RR A GG D+ LW LGVAP+V FRYC E+ CP +G CR RGG DDYVT+SKC+CFYGYGGEAC RVVS SL+WQF + V SNLAV+P VRVALRLG ATGAAPAVVL L G ASA YH CDLELTCA G+LS HSLQA+DFFFSFFSV ALVLHLCPMPWDEP V P S KA A E SD + AG + S G L + + A + AH G + A +G+E DG +RLA+LY CL PLL G T+ PTAG NLA+VFAMCG LLA W RLV RD R+ WRAE+A K V +G PSS W R++ + +G G + + + G L GRD A +G GGG DD+ P L V ++ + S G S C GGG+ +RLGR+ +LRSLRRV RGLLDWRQL +GVA FA GL A+Q T +HL+HGAW VLAMGS P+LRARRWG E+
Sbjct: 120 GAARIHEGQPRALSNFVRDEGGAAA------AVAGLSESGXXXXXXXXXXXXXXXXXAKQAPRWLWRGPGPPSLWYALEMSGREVGASMEIRLSVNSSAPLMTTATAAAASLSAHGSPSAWHMGPRFSSPSVG---DAGGG---GGGAPVVQSVPVENASSMNLSVAMRVGALPVVDPNGTAREGTVVLWTADALSEPGEASDRPPPPYDDSSDAAGAA------DLPW-WSTTFTWNLTHPPPLHPAAVGGGAGLGRGTAATTLFVVVSGETEAEASGRAK-----RYGGVGSTGGRDGKLR-RRAAEREVEEGEGGGGDEVGVSLWTLGVAPEVTFRYCDEDVCPIGRGECRAARGGSGDDYVTVSKCYCFYGYGGEACGQRVVSYVSLLWQFCLLVLSNLAVVPAVRVALRLGLATGAAPAVVLGLNGAASAFYHMCDLELTCAGGMLSFHSLQALDFFFSFFSVAALVLHLCPMPWDEPLVRSPPPSLLASTIALPSNSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFAGRQEGPSDRVLLLGDRDQHYPRXXXXXXXXXXAHGRSQPRNRSHAGGVASS--RKGSLASVSVDSPAAGSGAHRRGGTGGXXXXXXXXXXXXXXXXXXXXXNPAKAGEEADGGGAGSRLASLYVCLIPPLLVGVTDHPTAGANLAVVFAMCGGLLASNWGRLVRRDLRERALAEEXXXXXXXXXXQGHWRAESAESAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALSRSKRGVVNHGVVASPSSGWSFREEEE-EGEGEQNEEKELGKEXXXXXXXXAEDEGLVGRDRAKSSSHTAGTRVLRGGGXXXXXXHDDTDASTINNDFIPCNPSSLSVLSRPRARSLGGSR-C-GGGVRXXXXXXXXXXXXXXXXXXXXXXXXSTRLGRIFRLLRSLRRVAFRRGLLDWRQLGLGVAGFAAGLTCFAVQGTSATAGWYHLWHGAWHVLAMGSAVPILRARRWGPAES 1166
BLAST of mRNA_H-elongata_contig5365.12720.1 vs. uniprot
Match: A0A6H5JJD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD0_9PHAE) HSP 1 Score: 494 bits (1272), Expect = 1.090e-149 Identity = 393/1068 (36.80%), Postives = 479/1068 (44.85%), Query Frame = 2
Query: 17 GKERVQKGQPRALSNLLFDEGGASGKEQSGGAVDGR--------------------SPTGWIWRGPQPPSVWYALDMSGREVGASVEIKLTVNSSAPASDASRS-------ALDSPSAWQMGP-YSTTVGGEDDAGPGCATGNGALCPLDEALFKLTVAVRAGALPEVDGNGTAQDDTWVLQTSDAVRVAVERVPCPSPSSGEDENAISGENSRATDDLSMRWSTTFVWSVTRPPQLRPARAGG-AGLEKGDLATTLFVVIYGETIDDAVRRTK-IRGEERQGA-DGVVRGGDG-RERGRRLAGGSDDAEELLWGLGVAPQVAFRYCTEEACPAEKGVCRPTRGGDEDDYVTISKCHCFYGYGGEACAYRVVSTASLIWQFLVFVCSNLAVIPGVRVALRLGHATGAAPAVVLSLAGMASALYHTCDLELTCAAGLLSRHSLQAIDFFFSFFSVVALVLHLCPMPWDEPFVPHPIHSSRE------------------------------------------------------------------------------------------------------KATATAAEDGSDGL------------------------------------AGSICSDDGSYGHLIEDAGEGEVAVAVAHEGHHVG--------------KDDDNGNDDRAVSGKEGDGT----RLAALYACLTLPLLAGATEPPTAGVNLAIVFAMCGALLAFCWWRLVVRDFRD-------------------WRAEAAAKLDPERMERDVEVSDGGAAAQ--------------GRGAFFDGAGKEAV-YGPTIMPSSAW------DQRDKRKGDGRGHRKK------RGDGGMTRYLNSSSPRRYSPLCGRDPAVDEGSGNADRYGGGSDDDSAGGDFLESLPLVPPVDLRVSAKCQRPSFGYSSGCRGG--------GMEDAD-------------QRQSRLGRVREVLRSLRRVTVDRGLLDWRQLCVGVAAFALGLMFSALQRAPTTINTFHLYHGAWRVLAMGSTAPLLRARRWGVVET 2455
G R+ +GQPRALSN + DEGGA+ +P+ W+W+GP PPS+WYAL+MSGREVGAS++I+L+VNSSAP + A+ A SPSAW MGP +S+ GG+ G G A ++ D + L+VA+R GALP VD NGTA++ T VL T+DA+ E P DL WSTTF W++T PP L PA GG AGL +G ATTLFVV+ GET +A R K G G DG++R RE + GG D+ LW LGVAP+V FRYC E+ CP +G CR RGG DDYVT+SKC+CFYGYGGEAC RVVS SL+WQF + V SNLAV+P VRVALRLG ATGAAPAVVL L G ASA YH CDLELTCA G+LS HSLQA+DFFFSFFSV ALVLHLCPMPWDEP V P SS +A A E SD + AG + S S G L + +G A + AH G + A +G+E DG+ RLA+LY CL PLL G T+ PTAG NLA+VFAMC LLA W RLV RD R+ WRAE+A GR G+ + V +G PSS W +Q D + +G+ H G G + + S G V G G D++ + P L V ++ + S G S RGG G AD +RLGR+ +LRSLRRV V GLLDWRQL +GVA FA GL A+Q T +HL+HGAW VLAMGS P+LRARRWG E+
Sbjct: 690 GAARIHEGQPRALSNFVRDEGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPS-WLWQGPGPPSLWYALEMSGREVGASMQIRLSVNSSAPLTTAAXXXXXXXXXAHGSPSAWHMGPRFSSRSGGDAGGGDGGAPVVQSVPVEDASSMNLSVAMRVGALPVVDPNGTAREGTVVLWTADALSEPGEANDRPXXXXXXXXXXXXXXXXXXXXDLPW-WSTTFTWNLTHPPPLHPAAVGGGAGLGRGTAATTLFVVVSGETEAEASGRAKRYEGVGPPGGRDGMIRRRAAEREVEQGEGGGGDEVGVSLWTLGVAPEVTFRYCDEDVCPVGRGECRAARGGSGDDYVTVSKCYCFYGYGGEACGQRVVSYVSLLWQFCLLVLSNLAVVPAVRVALRLGLATGAAPAVVLGLNGAASAFYHMCDLELTCAGGMLSFHSLQALDFFFSFFSVAALVLHLCPMPWDEPLVCSPPPSSLASTIALPSNSAVVSANPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGAGGRAFAGRQEGPSDRVMLLGDRDQHYPRRSSGXXXXXXXXAHGRSRPRNRSHAGGVASS--SRGSLASVSVDGPAAGSGAHRRGGTGGXXXXXXXXWVXXXXXXXXXXXNPAKAGEEADGSGAGSRLASLYVCLIPPLLVGVTDHPTAGANLAVVFAMCSGLLASNWGRLVRRDLRERALAEEXXXXXXXXXXXGHWRAESAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRENALSGSKRGVVNHGVAAPPSSGWSFREEEEQGDSDQNEGKEHXXXXXXXXGEGQAGDQGLVERDKAKSSSHTAGT--RVLRGGGXXXXXXXXXHDNTDTSTIINDFIPSNPSSLSVLSRPRARSLGGSR--RGGXXXXXGSSGWTGADVSSNELXXXXXXXXXSTRLGRIFPLLRSLRRVAVRWGLLDWRQLGLGVAGFAAGLTCFAVQGTSATAGWYHLWHGAWHVLAMGSAVPILRARRWGPAES 1749
BLAST of mRNA_H-elongata_contig5365.12720.1 vs. uniprot
Match: A0A835Z3I3_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I3_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.290e-21 Identity = 62/150 (41.33%), Postives = 87/150 (58.00%), Query Frame = 2
Query: 872 VAPQVAFRYCTEEACPAEKGVCRPTRGGDEDDYVTISKCHCFYGYGGEACAYRVVSTASLIWQFLVFVCSNLAVIPGVRVALRLGHATGAA--PAVVLSLAGMASALYHTCDLELTCAAGLLSRHSLQAIDFFFSFFSVVALVLHLCPMP 1315
V P V+F C+ +ACP KG C + G E V + C+C YG+GGE CA R+VST ++ Q V +NLAV+P V +A RL T +A P V +AG +SALYH CD+ + C GL ++Q++D FS+ S A+ +L P
Sbjct: 540 VQPMVSFTRCSSQACPQSKGSCSVSMGTAEG--VLVGTCYCKYGWGGEGCADRLVSTQTIALQAAALVLTNLAVVPSVVLAYRLRKVTDSAAGPGAVFGVAGASSALYHLCDIGIACIGGL-RYGAIQSLDILFSYMSSAAVATYLAYWP 686
BLAST of mRNA_H-elongata_contig5365.12720.1 vs. uniprot
Match: UPI0005CAF851 (uncharacterized protein LOC101311331 isoform X1 n=3 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005CAF851) HSP 1 Score: 66.6 bits (161), Expect = 1.930e-7 Identity = 52/166 (31.33%), Postives = 78/166 (46.99%), Query Frame = 2
Query: 851 ELLWGLGV----APQVAFRYCTE-----EACP---AEKGVCRPTRGGDEDDYVTISKCHCFYGYGGEACAYRVVSTASLIWQFLVFVCSNLAVIPGVRVALRLGHATGAAPAVVLSLAGMASALYHTCDLELTCAAGLLSRHSLQAIDFFFSFFSVVALVLHLCPM 1312
E WG G+ A +A + T E CP + G C+ D + S C C +GG C+ +VS IWQ ++ V SN A +LR A V+ + +G+AS +YH CD+ C LL +SLQ +DF+ SF ++V+ ++L M
Sbjct: 509 EGTWGFGLRHLDATSIASKVQTTMSLSLERCPRRCSSHGKCQDVL--DASGLTSYSYCSCDRDHGGFDCSIEIVSRHGHIWQSILLVASNAAAALPAFYSLR---QKALAEWVIFTSSGIASGIYHACDVGAWC---LLDFNSLQFMDFWLSFMAIVSTFVYLATM 666
BLAST of mRNA_H-elongata_contig5365.12720.1 vs. uniprot
Match: A0A2I4DWI5_JUGRE (uncharacterized protein LOC108984128 n=6 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4DWI5_JUGRE) HSP 1 Score: 65.1 bits (157), Expect = 5.740e-7 Identity = 60/191 (31.41%), Postives = 85/191 (44.50%), Query Frame = 2
Query: 845 AEELLWGLGV---------APQVAFRYCTEEACP---AEKGVCRPTRGGDEDDYVTISKCHCFYGYGGEACAYRVVSTASLIWQFLVFVCSNLAVIPGVRVALRLGHATGAAPAVVLSLAGMASALYHTCDLELTCAAGLLSRHSLQAIDFFFSFFSVVALVLHLCPMPWDEPFVPHPIHSSREKATATAA 1381
A E WG G+ + + E CP + G CR D + S C C +GG C+ +VS IWQ + SN A + ALR A VV + +G+AS LYH CD+ CA L+ + LQ +DF+ SF +VV+ ++L + DE F IH++ TA A
Sbjct: 505 AREGTWGFGLRYLNTSGSASKDQTIMSVSLERCPKRCSSHGDCRVAF--DASGLTSYSFCSCDRRHGGFDCSVEIVSHQGHIWQSFCLIASNAAAVLPAFWALR---RKALAEWVVFTCSGIASGLYHACDVGTWCA---LTYNVLQFMDFWLSFMAVVSTFVYLATI--DEVFK-RAIHTAVAILTALMA 684
BLAST of mRNA_H-elongata_contig5365.12720.1 vs. uniprot
Match: A0A067BLW3_SAPPC (EGF-like domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BLW3_SAPPC) HSP 1 Score: 61.2 bits (147), Expect = 8.580e-6 Identity = 49/150 (32.67%), Postives = 72/150 (48.00%), Query Frame = 2
Query: 860 WGLGVAPQVAFRYCTEEACPAEKGVC--RPTRGGDEDDYVTISKCHCFYGYGGEACAYRVVSTASLIWQFLVFVCSNLAVIPGVRVALRLGHATGAAPAVVLSLAGMASALYHTCDLELTCAAGLLSRHSLQAIDFFFSFFSVVALVLHL 1303
W G+ Q + C+++ C + G C + T G + S+C C YGY G C V+ W V +N+A++P A+R H AV+ G+AS+LYH CDL CA L +L ++DF SF S++ V HL
Sbjct: 467 WTQGLVLQA--QGCSDDMC-GDSGYCVTKTTYQG-----LVYSRCVCAYGYAGPFC--DTVTIVEEQWHGWFLVITNVAIVPATVAAIR-RHLY--VEAVLFGALGVASSLYHACDLNWFCA---LPFSALLSLDFGLSFNSILLCVFHL 600
BLAST of mRNA_H-elongata_contig5365.12720.1 vs. uniprot
Match: A0A371E291_MUCPR (Transmembrane protein 8B (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371E291_MUCPR) HSP 1 Score: 59.3 bits (142), Expect = 3.430e-5 Identity = 51/165 (30.91%), Postives = 76/165 (46.06%), Query Frame = 2
Query: 845 AEELLWGLGVAPQVAFRYCTE---------EACPAE---KGVCRPTRGGDEDDYVTISKCHCFYGYGGEACAYRVVSTASLIWQFLVFVCSNLAVIPGVRVALRLGHATGAAPAVVLSLAGMASALYHTCDLELTCAAGLLSRHSLQAIDFFFSFFSVVALVLHL 1303
A E WGLG+ Y + E CP + G C+ + D + S C C +GG C+ +VS I Q + + SN A I +LR A V+ + +G+AS LYH CD+ CA L+ + LQ +DF+ SF +VV+ ++L
Sbjct: 488 AREGTWGLGLRHLYTSSYSLKGKTVMSISLEGCPKQCSSHGDCKYSF--DASGLTSYSFCSCDRNHGGFDCSIEIVSHKGHILQSIFLIGSNAAAILPAYWSLR---QKAFAEWVLFTSSGIASGLYHACDVGTWCA---LNFNVLQFMDFWLSFMAVVSTFVYL 644 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5365.12720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5365.12720.1 >prot_H-elongata_contig5365.12720.1 ID=prot_H-elongata_contig5365.12720.1|Name=mRNA_H-elongata_contig5365.12720.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=803bp MSGREVGASVEIKLTVNSSAPASDASRSALDSPSAWQMGPYSTTVGGEDDback to top mRNA from alignment at H-elongata_contig5365:3..5488+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5365.12720.1 ID=mRNA_H-elongata_contig5365.12720.1|Name=mRNA_H-elongata_contig5365.12720.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5486bp|location=Sequence derived from alignment at H-elongata_contig5365:3..5488+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5365:3..5488+ >mRNA_H-elongata_contig5365.12720.1 ID=mRNA_H-elongata_contig5365.12720.1|Name=mRNA_H-elongata_contig5365.12720.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4818bp|location=Sequence derived from alignment at H-elongata_contig5365:3..5488+ (Himanthalia elongata Himel1 dioecious)back to top |