mRNA_H-elongata_contig53022.12630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53022.12630.1
Unique NamemRNA_H-elongata_contig53022.12630.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Match: D7FXM4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM4_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.620e-31
Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 EKEAGMAADAFAFGMIAWEVLTGERPWAGMSTEEVNSRVSSGQRPPLSFDSICLDGCEGFGDMVRLLWAQDPTARPALRDVARRLRVLE-PEAQS 282
            +K+A   ADA+AFGMIAWEVLTG +PW G++ EEV++RVS G+RP LSF    L+  E FGD+VRLLWAQDPTARPAL+DVAR LRV E P A S
Sbjct: 1006 KKKAAFMADAYAFGMIAWEVLTGSQPWEGLTLEEVSNRVSRGERPALSFAPTALEDYENFGDLVRLLWAQDPTARPALQDVARLLRVPEQPRAPS 1100
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BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Match: A0A6H5LAT3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT3_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.340e-30
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    1 EKEAGMAADAFAFGMIAWEVLTGERPWAGMSTEEVNSRVSSGQRPPLSFDSICLDGCEGFGDMVRLLWAQDPTARPALRDVARRLRV 261
            +K+A   ADA+AFGMIAWEVLTG +PW G++ EEV++RVS G+RP LSF    L+  + FGD+VRLLWAQDPTARPAL+DVAR LRV
Sbjct:  969 KKKAAFMADAYAFGMIAWEVLTGSQPWEGLTLEEVSNRVSRGERPALSFAPTALEDYDNFGDLVRLLWAQDPTARPALQDVARLLRV 1055
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BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Match: A0A803RAH2_CANSA (Protein kinase domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803RAH2_CANSA)

HSP 1 Score: 62.4 bits (150), Expect = 4.870e-10
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   25 DAFAFGMIAWEVLTGERPWAGMSTEEVNSRVSSGQRPPLSFDSICLDGCEGFGDMVRLLWAQDPTARPALRDVARRLRVLEPEAQS 282
            D F+FG++ WE+LTGE P+A M    +   V++  RPP+   S C      +  ++   WA DP  RP+  ++ARRLRV+    QS
Sbjct:   75 DVFSFGIVLWEILTGEEPYANMHYGAIIGIVNNTLRPPVP--SYC---DSEWRLLMEQCWAPDPVGRPSFTEIARRLRVMSAACQS 155
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BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Match: A0A5B6Z5W1_DAVIN (Protein kinase domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6Z5W1_DAVIN)

HSP 1 Score: 58.2 bits (139), Expect = 5.120e-9
Identity = 27/80 (33.75%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   25 DAFAFGMIAWEVLTGERPWAGMSTEEVNSRVSSGQRPPLSFDSICLDGCEGFGDMVRLLWAQDPTARPALRDVARRLRVL 264
            D ++FGM+ WE+LTGE P+A + +EE+ + +  G   P    S C      +  ++   W+ DP +RPA  ++A+ LR +
Sbjct:   17 DVYSFGMVMWELLTGEEPYANLRSEEIIAGIIKGNLRP-EIPSWC---DPAWRSLMERCWSSDPDSRPAFSEIAKELRAM 92
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BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Match: A0A2P6TVS7_CHLSO (Carnosine synthase 1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVS7_CHLSO)

HSP 1 Score: 61.6 bits (148), Expect = 5.150e-9
Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:   19 AADAFAFGMIAWEVLTGERPWAGMSTEEVNSRVSSGQRPPLSF-------DSICLDGCEGFGDMVRLLWAQDPTARPALRDV 243
            A+D ++FG++ WEVL+ + PWA     EV  +V +G+RPP+         D+    G   +  ++R  WAQDP  RP   D+
Sbjct:  121 ASDVYSFGLVLWEVLSWQLPWARTPPFEVWRKVVNGERPPVPALSELPGPDTHAFSGLGAYLQLMRECWAQDPNVRPTFADI 202
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BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Match: A0A0A0LRS9_CUCSA (Protein kinase domain-containing protein n=6 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0LRS9_CUCSA)

HSP 1 Score: 61.6 bits (148), Expect = 5.260e-9
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:   25 DAFAFGMIAWEVLTGERPWAGMSTEEV-NSRVSSGQRPPLSFDSICLDGCEGFGDMVRLLWAQDPTARPALRDVARRLRVLEPEAQS 282
            D F+FG++ WE+LTGE P+A M    +    V++  RPP+   S C      +  ++   W+ DP ARP+  D+ARRLRV+   AQ+
Sbjct: 1201 DVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPPVP--SFC---DPDWRLLMEQCWSPDPVARPSFTDIARRLRVMSTAAQT 1282
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BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Match: A0A2P5BJY6_PARAD (Mitogen-activated protein kinase kinase kinase n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BJY6_PARAD)

HSP 1 Score: 61.6 bits (148), Expect = 5.260e-9
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:   25 DAFAFGMIAWEVLTGERPWAGMSTEEV-NSRVSSGQRPPLSFDSICLDGCEGFGDMVRLLWAQDPTARPALRDVARRLRVLEPEAQS 282
            D F+FG++ WE+LTGE P+A M    +    V+S  RPP+   S C      +  ++   WA DP ARP+  ++ARRLRV+   +QS
Sbjct: 1216 DVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNSTLRPPVP--SYC---DSEWRLLMEQCWAPDPIARPSFTEIARRLRVMSAASQS 1297
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BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Match: S4VYW6_9VIRU (Serine/threonine protein kinase n=1 Tax=Pandoravirus salinus TaxID=1349410 RepID=S4VYW6_9VIRU)

HSP 1 Score: 61.6 bits (148), Expect = 5.300e-9
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:   22 ADAFAFGMIAWEVLTGERPWAGMSTEEVNSRV-SSGQRPPLSFDSICLDGCEGFGDMVRLLWAQDPTARPALRDVARRLRVLEPEAQS 282
            AD ++FG+I WEVLT E+P+AGMS   +   V   G RP +  ++      + + D++   W +DPT RP   ++  RL  +  E+ S
Sbjct: 1012 ADVYSFGIILWEVLTREQPYAGMSPAAIAVAVIRDGARPRMPDEATMAAHPQAYVDLIHDCWHRDPTVRPTFMEIMTRLSAMHGESSS 1099
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BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Match: A0A2U7U9A6_9VIRU (Serine/threonine protein kinase n=2 Tax=Pandoravirus TaxID=2060084 RepID=A0A2U7U9A6_9VIRU)

HSP 1 Score: 61.2 bits (147), Expect = 7.240e-9
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:   22 ADAFAFGMIAWEVLTGERPWAGMSTEEVNSRVSSGQRPPLSFDSICLDGCEGFGDMVRLLWAQDPTARPALRDVARRLRVLEPEAQS 282
            AD ++FG+I WEVLT E+P+AGMS   +   V      P   D +     + + D+V   W +DPT RP   +V  RL  +  E+ S
Sbjct: 1011 ADVYSFGIILWEVLTREQPYAGMSPAAIAVAVIRDDARPRMPDDLPAAHPQAYVDLVNDCWHRDPTVRPTFMEVMTRLSAMHGESSS 1097
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BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Match: A0A2I0KQQ2_PUNGR (Protein kinase domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KQQ2_PUNGR)

HSP 1 Score: 60.1 bits (144), Expect = 1.050e-8
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:   25 DAFAFGMIAWEVLTGERPWAGMSTEEV-NSRVSSGQRPPLSFDSICLDGCEG-FGDMVRLLWAQDPTARPALRDVARRLRVLEPEAQS 282
            D F+FG++ WE+LTGE P+A M    +    V++  RPP+       + C+  +  ++   WA DP ARP   ++ARRLRV+   AQS
Sbjct:  167 DVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPPVP------NYCDPEWRLLMEQCWAPDPMARPCFTEIARRLRVMSTAAQS 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53022.12630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXM4_ECTSI3.620e-3166.32Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5LAT3_9PHAE2.340e-3066.67Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A803RAH2_CANSA4.870e-1038.37Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A5B6Z5W1_DAVIN5.120e-933.75Protein kinase domain-containing protein n=1 Tax=D... [more]
A0A2P6TVS7_CHLSO5.150e-935.37Carnosine synthase 1 n=1 Tax=Chlorella sorokiniana... [more]
A0A0A0LRS9_CUCSA5.260e-939.08Protein kinase domain-containing protein n=6 Tax=B... [more]
A0A2P5BJY6_PARAD5.260e-940.23Mitogen-activated protein kinase kinase kinase n=2... [more]
S4VYW6_9VIRU5.300e-935.23Serine/threonine protein kinase n=1 Tax=Pandoravir... [more]
A0A2U7U9A6_9VIRU7.240e-936.78Serine/threonine protein kinase n=2 Tax=Pandoravir... [more]
A0A2I0KQQ2_PUNGR1.050e-838.64Protein kinase domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53022contigH-elongata_contig53022:961..2649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.3e-25
Seed eggNOG ortholog2880.D7FXM4
KEGG koko:K15503
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine-threonine/tyrosine-protein kinase catalytic domain
Ec32 orthologEc-28_002290.1
Exons2
Model size282
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53022.12630.1prot_H-elongata_contig53022.12630.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53022 976..2649 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930865.4636545-UTR-H-elongata_contig53022:960..9751622930865.4636545-UTR-H-elongata_contig53022:960..975Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53022 961..975 +
1691679603.4758987-UTR-H-elongata_contig53022:960..9751691679603.4758987-UTR-H-elongata_contig53022:960..975Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53022 961..975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930865.481475-CDS-H-elongata_contig53022:975..10171622930865.481475-CDS-H-elongata_contig53022:975..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53022 976..1017 +
1691679603.4918363-CDS-H-elongata_contig53022:975..10171691679603.4918363-CDS-H-elongata_contig53022:975..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53022 976..1017 +
1622930865.4997358-CDS-H-elongata_contig53022:2424..26491622930865.4997358-CDS-H-elongata_contig53022:2424..2649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53022 2425..2649 +
1691679603.50685-CDS-H-elongata_contig53022:2424..26491691679603.50685-CDS-H-elongata_contig53022:2424..2649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53022 2425..2649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53022.12630.1

>prot_H-elongata_contig53022.12630.1 ID=prot_H-elongata_contig53022.12630.1|Name=mRNA_H-elongata_contig53022.12630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MAADAFAFGMIAWEVLTGERPWAGMSTEEVNSRVSSGQRPPLSFDSICLD
GCEGFGDMVRLLWAQDPTARPALRDVARRLRVLEPEAQS
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mRNA from alignment at H-elongata_contig53022:961..2649+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53022.12630.1 ID=mRNA_H-elongata_contig53022.12630.1|Name=mRNA_H-elongata_contig53022.12630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1689bp|location=Sequence derived from alignment at H-elongata_contig53022:961..2649+ (Himanthalia elongata Himel1 dioecious)
GAAAAGGAGGCCGGCATGGCGGCGGACGCCTTCGCTTTTGGCATGATTGC
TTGGGAGGTGAGACAGACAGAAGTGTAAAAGAAAACGGAGTCTCTAAGGA
GGAGGGAGATCCCTTTGTCAGGTCGGCGAGAGAGGGGTTGGAGGGTATCG
CACCGTTTCCGTACGTATTATCTGTACTATGTTGTCGTCTCGTTTTTTTG
GGAGGTCAGACTTGTGGACGCATCAGCTAGGGTAAGGGTAAGGTCACACA
GGATGAATGTCGCACAGGTTTTCTCCACCTTCCTTCTGCGGTGCTTGTCT
TAATTCAGCCGTCATAGTCCCATTTCCCTCATCGACCGTGAAGTATCTCT
AATTTTGTGTACCCACGAAATAATCGTTCTCCACATGTGAGAAAAAAAAT
CCCAGTTTCATGTGACTGCGCCGAGATTCGAACCCACGTTCCAACGTCAG
ATGGTATCGAGTTTACCAAATGAACTACCGGGGCGACGTACATCCCGGTG
GTTTACAGATCGTTTGTACGTACATCGTACCGGTACCATCAAACAAAACA
CTGTTGCGCCGTATCGTAAAAAAACACGCTAAATATTTCAGGTTCTTGCG
GGCGTCTAGTTTTTCGGAGGGGGTATGCGCCGCCTTCAAATATATATTTG
TCTCTCTCTCTCTCTCTTAATTTTCTGCTCAGCGGGCGAGGCGGCACGTA
TTAGATTCGAATCTCTGCGCCCCCTCCCCAACACCCCCTAGCTTTTTCTT
CTTAGTTTTGAACCAAAGAGGCGGTTGGTAGTTGATTGAGTCCATGCGCA
TCCTGCGACTCTCTGTTCTTCCCTCTTGATTGTGTTTTCTTGTTGTTTTT
TAAACATTTGCCGTTGGTTTTCCGTGCGTCGAAGGCGTTTTTTCTTGTGA
CCCCATCGCTATGCGTGTGTTGCCACCCTTTTGGTGCGTAGATTTTATCT
TTTTGTAAGTCATATATTCGACGAGCCTTTATTTTCTCCTTCCCTTTATT
GATTTTATATATATATATATATACATTCGTTTCGTCCACCTATATGAGTG
CGTAATTAACTCTGTTTTGATATCATCGCGTTCTCTCCCTTACCCCAAAA
GCTGCTGCTGTTGTCTGTTTCAACAATGTCTTGAGAAGAAGACTGTCTTC
TGTTGCAACAAGCATTAAAATGCGCTCTCAAATTTTGAAGAGCACCATCG
TCTTTTGAAAATGTCTTCGCGAGTTCTGACGTCTGTTGCATGTTACGTAT
GGTGGCGAAAAGCCGAAATAATATTTCGATCAGCCAATGATCAACGGAGA
CGCCTCATTTTTTCTGGATCCACGATCTTCCCCCCCCATCTTTCCTCATC
CTCCCCGTTAGTAATATCCCCGTGTGATTAAGGACATCATGCCTTGACCG
CTTGCCTTCCCCCGATGAAACTCACACCGCACTGCCTCGTACGCTTTTTG
TTGCATGGAGGAAGGTGCTCACGGGTGAGCGACCATGGGCGGGCATGAGT
ACAGAAGAGGTGAACTCCCGGGTGTCGAGTGGTCAGCGGCCCCCTCTCTC
GTTCGACTCCATATGCCTCGACGGGTGCGAAGGGTTCGGTGACATGGTGC
GGCTGCTTTGGGCGCAGGACCCGACCGCGAGGCCGGCGCTGAGGGACGTC
GCTCGGCGCCTGCGGGTGCTCGAGCCGGAGGCACAGTCA
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Coding sequence (CDS) from alignment at H-elongata_contig53022:961..2649+

>mRNA_H-elongata_contig53022.12630.1 ID=mRNA_H-elongata_contig53022.12630.1|Name=mRNA_H-elongata_contig53022.12630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig53022:961..2649+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCGGACGCCTTCGCTTTTGGCATGATTGCTTGGGAGATGGCGGC
GGACGCCTTCGCTTTTGGCATGATTGCTTGGGAGGTGCTCACGGGTGAGC
GACCATGGGCGGGCATGAGTACAGAAGAGGTGAACTCCCGGGTGTCGAGT
GGTCAGCGGCCCCCTCTCTCGTTCGACTCCATATGCCTCGACGGGTGCGA
AGGGTTCGGTGACATGGTGCGGCTGCTTTGGGCGCAGGACCCGACCGCGA
GGCCGGCGCTGAGGGACGTCGCTCGGCGCCTGCGGGTGCTCGAGCCGGAG
GCACAGTCAGTGCTCACGGGTGAGCGACCATGGGCGGGCATGAGTACAGA
AGAGGTGAACTCCCGGGTGTCGAGTGGTCAGCGGCCCCCTCTCTCGTTCG
ACTCCATATGCCTCGACGGGTGCGAAGGGTTCGGTGACATGGTGCGGCTG
CTTTGGGCGCAGGACCCGACCGCGAGGCCGGCGCTGAGGGACGTCGCTCG
GCGCCTGCGGGTGCTCGAGCCGGAGGCACAGTCA
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