mRNA_H-elongata_contig5298.12626.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5298.12626.1
Unique NamemRNA_H-elongata_contig5298.12626.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 4.990e-94
Identity = 149/346 (43.06%), Postives = 218/346 (63.01%), Query Frame = 1
Query:   13 HVLVLMDDVSRFVWPEEAVSCSMEVAARAVLKWCTSFGVPKAFTNDGGTQFTGKVI*MVSSRLGVVHHFGVANVSWSQGTVKRMNREVVKTFRAVLSERRRSPGEWRLAWGAVQWALNSANREHMGTTPFQMMTGRPPVKAMSVLAGEYGDGWTVEELDVSGEKMKVWVAGWVREQEYLRRDVVKRVREQRERVRELSGLGHLPVFEVGDYVLVAWVRKPGRVRKLVQTWTGPWRVLPGGSEHVHVVEDIVTGETQKVHVVRMRPYADSSLVVRAEVREVFEMTKHQGEFEMADVISVGKDPARVGE-YRVKIAWVGLEDENLTWEPMSTIYADAPKYIEQNLRKI 1047
            ++LV+MDD+S F W E   +C+  + A+ +L WC + GVP+ + +D  T F   V+  +   LGV   F VAN  WS GT +RM REVV+T +AVL ERRR+  +W     AVQWALN+A RE   +TP+ +M GR P  + S LA   G+ W ++ LD +  K+K  V   ++ Q  L + + ++V   R R R  +  G LP F VGDYV+VA VR+ G   KL  TWTGPWRV+    +HV+ V++IV G+ + VHV R+R YADS L V +++++VF+ +  QGE EM  ++++G  PA  G  Y V++ W G E++  TW+P+S IY DAP++++Q LRK+
Sbjct:   67 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDAT--KLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 408          
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 7.710e-87
Identity = 149/346 (43.06%), Postives = 218/346 (63.01%), Query Frame = 1
Query:   13 HVLVLMDDVSRFVWPEEAVSCSMEVAARAVLKWCTSFGVPKAFTNDGGTQFTGKVI*MVSSRLGVVHHFGVANVSWSQGTVKRMNREVVKTFRAVLSERRRSPGEWRLAWGAVQWALNSANREHMGTTPFQMMTGRPPVKAMSVLAGEYGDGWTVEELDVSGEKMKVWVAGWVREQEYLRRDVVKRVREQRERVRELSGLGHLPVFEVGDYVLVAWVRKPGRVRKLVQTWTGPWRVLPGGSEHVHVVEDIVTGETQKVHVVRMRPYADSSLVVRAEVREVFEMTKHQGEFEMADVISVGKDPARVGE-YRVKIAWVGLEDENLTWEPMSTIYADAPKYIEQNLRKI 1047
            ++LV+MDD+S F W E   +C+  + A+ +L WC + GVP+ + +D  T F   V+  +   LGV   F VAN  WS GT +RM RE+V+T +AVL ERRR+  +W     AVQWALN+A RE   +TP+ +M GR P  + S LA   G+ W ++ LD +  K+K  V   ++ Q  L + V ++V   R R R  +  G LP F VGDYV+VA VR+ G   KL  TWTGPWRV+    +HV+ V++IV G+ + VHV R+R YADS L V +++++VF+ +  QGE EM  ++++G  PA  G  Y V++ W G E++  TW+P+S IY DAP++++Q LRK+
Sbjct: 1290 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDAT--KLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 1631          
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 3.850e-65
Identity = 130/346 (37.57%), Postives = 202/346 (58.38%), Query Frame = 1
Query:   10 EHVLVLMDDVSRFVWPEEAVSCSMEVAARAVLKWCTSFGVPKAFTNDGGTQFTGKVI*MVSSRLGVVHHFGVANVSWSQGTVKRMNREVVKTFRAVLSERRRSPGEWRLAWGAVQWALNSANREHMGTTPFQMMTGRPPVKAMSVLAGEYGDGWTVEELDVSGEKMKVWVAGWVREQEYLRRDVVKRVREQRERVRELSGLGHLPVFEVGDYVLVAWVRKPGRVRKLVQTWTGPWRVLPGGSEHVHVVEDIVTGETQKVHVVRMRPYADSSLVVRAEVREVFEMTKHQGEFEMADVISVGKDPARVGEYRVKIAWVGLEDENLTWEPMSTIYADAPKYIEQNLRKI 1047
            +++LV+MDD+S +VW E   +C+  + A+ +L WC   GVP+ + +D  + F   ++  + + LGV  +F VAN  WS GT +RM REVV+T +A++ E R    +W     AVQWALN+A RE  G+TP+ +M GR P  A+S LA   G  W V+ LD    ++KV     V  Q +L ++V+ +V+  R + R  + +G LP F VGDYV+VA  R                        HV+ V++IV+GE + VHV R+R YAD++L + AE++EVF+    QGEFEMA ++ +       G + V++ WVG + E  TWE +S ++  AP++++  LR++
Sbjct: 1391 KYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLKVQHV--VEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVIVAAERL-----------------------HVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELRRL 1710          
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.540e-41
Identity = 106/349 (30.37%), Postives = 183/349 (52.44%), Query Frame = 1
Query:   13 HVLVLMDDVSRFVWPEEAVSCSMEVAARAVLKWCTSFGVPKAFTNDGGTQFTGKVI*MVSSRLGVVHHFGVANVSWSQGTVKRMNREVVKTFRAVLSERRRSPGEWRLAWGAVQWALNSANREHMGT-TPFQMMTGRPPVKAMSVLAGEYGDGWTVEELDVSGEKMKVWVAGWVREQEYLRRDVVKRVREQRERVRELS-GLGHLPVFEVGDYVLVAWVRKPGRVR--KLVQTWTGPWRVLPGGSEHVHVVEDIVTGETQKVHVVRMRPYADSSLVVRAEVREVFEMTKHQGEFEMADVISVGKDPARVGEYRVKIAWVGLEDENLTWEPMSTIYADAP----KYIEQN 1035
            +VLVL D+++ F     A S   EV   ++L W   FG+P+++ +D G+ F  +V+  +  RL     F  A   W  GTV+R+NR++++  RA+L E +   G W      +Q  LN +    +G   P ++  G P   A+  +A     G  +  +D   E++   V    R    +R++     +++++R+ E++   G +  F VGD+VL  W R   R++  KL+  W GP+RV+    +H  ++E ++T +  +VH  R++ Y DSSL V AE++E   + K      +  +++   +P    E+ V++AW+GLED   +WEP+  IYAD P    +YI+ N
Sbjct:   22 YVLVLKDELTHFCELVPADSAGSEVVVASILDWFKRFGLPESWESDNGSHFKAEVMASLCERLKANQSFVPAYTPWINGTVERINRDILQVLRAMLLEFQLDTGNWLYLLPLIQANLNHSPVASLGNHAPIEVFMGLPAPSALDTIAVPSDKGTRLVPVDP--ERVSAHVEKLRRSLHAMRKEAT--TQKEKKRLYEMARAKGGICNFAVGDFVL--WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQEYIDSN 360          
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.830e-40
Identity = 71/152 (46.71%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  595 RELSGLGHLPVFEVGDYVLVAWVRKPGRVRKLVQTWTGPWRVLPGGSEHVHVVEDIVTGETQKVHVVRMRPYADSSLVVRAEVREVFEMTKHQGEFEMADVISVGKDPARVGE-YRVKIAWVGLEDENLTWEPMSTIYADAPKYIEQNLRKI 1047
            R  +  G LP F VGDYV+VA VR+ G   KL  TWTGPWRV+    +HV+ V++IV G+ + VHV R+R YADS L V +++++VF+ +  QGE EM  ++++G  PA  G  Y V++ W G E++  TW+P+S IY DAP++++Q LRK+
Sbjct:    4 RAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 153          
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Match: A0A6G0WRF7_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRF7_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.750e-38
Identity = 103/347 (29.68%), Postives = 174/347 (50.14%), Query Frame = 1
Query:   10 EHVLVLMDDVSRFVWPEEAVSCSMEVAARAVLKWCTSFGVPKAFTNDGGTQFTGKVI*MVSSRLGVVHHFGVANVSWSQGTVKRMNREVVKTFRAVLSERRRSPGEWRLAWGAVQWALNSANREHMG-TTPFQMMTGRPPVKAMSVLAGE-----YGDGWTVEELDVSGEKMKVWVAGWVREQEYLRRDVVKRVREQRERVREL-SGLGHLPVFEVGDYVLVAWVRKPGRVRKLVQTWTGPWRVLPGGSEHVHVVEDIVTGETQKVHVVRMRPYADSSLVVRAEVREVFEMTKHQGEFEMADVISVGKDPARVGEYRVKIAWVGLEDENLTWEPMSTIYADAPKYIE 1029
            ++VLVL DD++ FV      S + +V   A+++W   F VP+ + +DGGT F   V+  ++SRL   H+  +A+  W  G+V+R+NR+++   RA+L+E R +  EW      VQ  +N    E +G  +P    TG  P   ++V+ G      + DG  + EL++    +K  +    +  + L + ++ R R  + R   L +    L V E GDYVL + V +     KL+ TW GP+RVL     +  V+E ++TG+TQ+ H  R++ YAD  L +     E+ +    QG     D     +      ++ +K  W GLE    +WE +  +Y + P  ++
Sbjct:    9 KYVLVLKDDLTHFVKLVACDSPTSQVTVDAIMEWSALFSVPQVWISDGGTHFKNTVMKELASRLKAQHNIVLAHCPWRNGSVERVNRDILSVMRAMLAESRLNETEWDYLLPVVQANMNQTPTESLGGISPMFAYTGLEPTTPLNVVVGRVNRKLHTDG--LHELNMEKTSIKNAMRNLNQSLQELHKKILDRKRAAQNRNMLLKTNTSELNVSE-GDYVLWSRVDENAHYPKLLVTWIGPYRVLEC-LPYSCVIEHLLTGKTQEAHHSRLKFYADDHLDL---TEEILDPVSLQGITLAVDAFEAARYNPGSNQWELKTHWKGLESIESSWEALPKLYGEVPGLVK 348          
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.160e-37
Identity = 79/195 (40.51%), Postives = 115/195 (58.97%), Query Frame = 1
Query:   13 HVLVLMDDVSRFVWPEEAVSCSMEVAARAVLKWCTSFGVPKAFTNDGGTQFTGKVI*MVSSRLGVVHHFGVANVSWSQGTVKRMNREVVKTFRAVLSERRRSPGEWRLAWGAVQWALNSANREHMGTTPFQMMTGRPPVKAMSVLAGEYGDGWTVEELDVSGEKMKVWVAGWVREQEYLRRDVVKRVREQRERVR 597
            ++LV+MDD+S F W E   +C+  + A+ +L WC + GVP+ + +D  T F   V+  +   LGV   F VAN  WS GT +RM RE+V+T +AVL ERRR+  +W     AVQWALN+A RE   +TP+ +M GR P  + S LA   G+ W ++ LD +  K+K  V   ++ Q  L + V ++V   R R R
Sbjct:  514 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDAT--KLKQQVQNVIQTQAVLHKQVQQKVDHNRARQR 706          
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Match: A0A6G0K007_9STRA (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6G0K007_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.570e-37
Identity = 110/351 (31.34%), Postives = 183/351 (52.14%), Query Frame = 1
Query:   10 EHVLVLMDDVSRFVWPEEAVSC---SMEVAARAVLKWCTSFGVPKAFTNDGGTQFTGKVI*MVSSRLGVVHHFGVANVSWSQGTVKRMNREVVKTFRAVLSERRRSPGEWRLAWGAVQWALNSANREHMGT-TPFQMMTGRPPVKAMS--VLAGEYGDGWTVEELDVSGEKMKVWVAGWVREQEYLRRDVVKRVREQRER--VRELSGLGH-LPV-FEVGDYVLVAWVRKPGRVRKLVQTWTGPWRVLPGGSEHVHVVEDIVTGETQKVHVVRMRPYADSSLVVRAEVREVFEMTKHQGEFEMADVISVGKDPARVGEYRVKIAWVGLEDENLTWEPMSTIYADAPKYIEQ 1032
            ++VLV+ D+ + F    E V+C   + EVAA A+L W + FG+P  + +D G+ FT KVI  ++ RL     F +A   W  G+V+R+NR++++  +A++ E + S  +W      VQ ++N +  + +    P ++ TG P    +   VL G+       +   VS  K +  +   +R+     + + K V+E RER  +R  S   +  PV F +GDYVL + V +     KL  TW GP+RV  G  E+   VE +VT ++  VH  R++ YADSSL V A   E+ +    QG     + +   +    +  + +K+ W GLE+   +WEP+ +I  D PK +++
Sbjct:  202 QYVLVMKDEATHFA---ELVACDGPTSEVAAAAILDWHSRFGIPPTWVSDSGSHFTSKVIGELNRRLKAQQKFTLAYTPWKNGSVERVNRDIIQVLKALILEFKVSAADWPYLLPLVQSSINHSPVQSLANKAPIKLFTGLPCPNILDTVVLPGK-------KARLVSLPKERPDLDNKLRQLRASLKVMHKAVKEVRERQALRYRSRRHYEQPVNFSIGDYVLRSRVDEKLHANKLSVTWVGPYRVT-GAIEYYFTVEHLVTRKSTNVHPSRLKHYADSSLNVSA---ELIDHVAPQGTLLAVEALVDHRYNTSMKMFEIKVKWQGLEEVEDSWEPLKSIVEDVPKLMKE 538          
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.750e-37
Identity = 103/350 (29.43%), Postives = 182/350 (52.00%), Query Frame = 1
Query:   10 EHVLVLMDDVSRFVWPEEAVSCSMEVAARAVLKWCTSFGVPKAFTNDGGTQFTGKVI*MVSSRLGVVHHFGVANVSWSQGTVKRMNREVVKTFRAVLSERRRSPGEWRLAWGAVQWALNSANREHMGT-TPFQMMTGRPPVKAMSVLAGEYGDGWTVEELDVSGEKMKVWVAGWVREQEYLRRDVVKRVREQRERVRELS-GLGHLPVFEVGDYVLVAWVRKPGRVR--KLVQTWTGPWRVLPGGSEHVHVVEDIVTGETQKVHVVRMRPYADSSLVVRAEVREVFEMTKHQGEFEMADVISVGKDPARVGEYRVKIAWVGLEDENLTWEPMSTIYADAP----KYIEQN 1035
            ++VLVL D+++ F     A S   EV   ++L W   FG+P+++ +D G+ F  +V+  +  RL     F      W  GTV+R+NR++++  RA+L E +     W      +Q  LN +    +G   P ++ TG P   A+  +A     G  +  +D   E++   V    R    + ++     +++++R+ E++   G +  F VGD+VL  W R   R++  KL+  W GP+RV+    +H  +++ ++T +  +VH  R++ Y DSSL V AE++E   + K      +  +++   +P    E+ V++AW+GLED   +WEP+  IYAD P    +YI+ N
Sbjct:  644 KYVLVLKDELTHFCELVPADSAGSEVVVASILDWFKRFGLPESWESDNGSHFKAEVMASLCERLKANQSFVPVYTPWINGTVERINRDILQVLRAMLLEFQLDTRNWLYLLPLIQANLNHSPVASLGNHAPIEVFTGLPAPSALDTIAVPSDKGTRLVPVDP--ERVSAHVEKLRRSLHAMHKEAT--TQKEKKRLYEMARAKGGICNFAVGDFVL--WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQEYIDSN 983          
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.180e-37
Identity = 103/350 (29.43%), Postives = 182/350 (52.00%), Query Frame = 1
Query:   10 EHVLVLMDDVSRFVWPEEAVSCSMEVAARAVLKWCTSFGVPKAFTNDGGTQFTGKVI*MVSSRLGVVHHFGVANVSWSQGTVKRMNREVVKTFRAVLSERRRSPGEWRLAWGAVQWALNSANREHMGT-TPFQMMTGRPPVKAMSVLAGEYGDGWTVEELDVSGEKMKVWVAGWVREQEYLRRDVVKRVREQRERVRELS-GLGHLPVFEVGDYVLVAWVRKPGRVR--KLVQTWTGPWRVLPGGSEHVHVVEDIVTGETQKVHVVRMRPYADSSLVVRAEVREVFEMTKHQGEFEMADVISVGKDPARVGEYRVKIAWVGLEDENLTWEPMSTIYADAP----KYIEQN 1035
            ++VLVL D+++ F     A S   EV   ++L W   FG+P+++ +D G+ F  +V+  +  RL     F      W  GTV+R+NR++++  RA+L E +     W      +Q  LN +    +G   P ++ TG P   A+  +A     G  +  +D   E++   V    R    + ++     +++++R+ E++   G +  F VGD+VL  W R   R++  KL+  W GP+RV+    +H  +++ ++T +  +VH  R++ Y DSSL V AE++E   + K      +  +++   +P    E+ V++AW+GLED   +WEP+  IYAD P    +YI+ N
Sbjct: 1060 KYVLVLKDELTHFCELVPADSAGSEVVVASILDWFKRFGLPESWESDNGSHFKAEVMASLCERLKANQSFVPVYTPWINGTVERINRDILQVLRAMLLEFQLDTRNWLYLLPLIQANLNHSPVASLGNHAPIEVFTGLPAPSALDTIAVPSDKGTRLVPVDP--ERVSAHVEKLRRSLHAMHKEAT--TQKEKKRLYEMARAKGGICNFAVGDFVL--WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQEYIDSN 1399          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5298.12626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVS6_9PHAE4.990e-9443.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE7.710e-8743.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE3.850e-6537.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0RPX5_9STRA3.540e-4130.37Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A6H5KAI3_9PHAE2.830e-4046.71Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6G0WRF7_9STRA2.750e-3829.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JCX8_9PHAE1.160e-3740.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0K007_9STRA1.570e-3731.34Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A6A4G1U2_9STRA3.750e-3729.43Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3KPV3_9STRA4.180e-3729.43Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5298contigH-elongata_contig5298:7724..8773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue2.2e-21
Seed eggNOG ortholog164328.Phyra78350
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH2U@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1050
Cds size867
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.9996288-CDS-H-elongata_contig5298:7723..85901622930864.9996288-CDS-H-elongata_contig5298:7723..8590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5298 7724..8590 -
1691679603.2467268-CDS-H-elongata_contig5298:7723..85901691679603.2467268-CDS-H-elongata_contig5298:7723..8590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5298 7724..8590 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930865.0173395-UTR-H-elongata_contig5298:8590..87731622930865.0173395-UTR-H-elongata_contig5298:8590..8773Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5298 8591..8773 -
1691679603.2685614-UTR-H-elongata_contig5298:8590..87731691679603.2685614-UTR-H-elongata_contig5298:8590..8773Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5298 8591..8773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5298.12626.1prot_H-elongata_contig5298.12626.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5298 7724..8590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5298.12626.1

>prot_H-elongata_contig5298.12626.1 ID=prot_H-elongata_contig5298.12626.1|Name=mRNA_H-elongata_contig5298.12626.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
MVSSRLGVVHHFGVANVSWSQGTVKRMNREVVKTFRAVLSERRRSPGEWR
LAWGAVQWALNSANREHMGTTPFQMMTGRPPVKAMSVLAGEYGDGWTVEE
LDVSGEKMKVWVAGWVREQEYLRRDVVKRVREQRERVRELSGLGHLPVFE
VGDYVLVAWVRKPGRVRKLVQTWTGPWRVLPGGSEHVHVVEDIVTGETQK
VHVVRMRPYADSSLVVRAEVREVFEMTKHQGEFEMADVISVGKDPARVGE
YRVKIAWVGLEDENLTWEPMSTIYADAPKYIEQNLRKI*
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mRNA from alignment at H-elongata_contig5298:7724..8773-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5298.12626.1 ID=mRNA_H-elongata_contig5298.12626.1|Name=mRNA_H-elongata_contig5298.12626.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-elongata_contig5298:7724..8773- (Himanthalia elongata Himel1 dioecious)
CACGATCCAGAGCATGTGCTAGTGTTGATGGATGATGTGAGCCGGTTCGT CTGGCCGGAAGAGGCCGTGTCGTGCTCGATGGAGGTGGCGGCGCGTGCCG TGCTGAAGTGGTGTACTTCGTTTGGGGTGCCCAAGGCGTTCACCAATGAT GGTGGGACACAATTTACCGGGAAAGTGATATAAATGGTGTCGTCACGATT GGGGGTGGTCCACCATTTTGGTGTGGCAAATGTTTCGTGGTCGCAGGGGA CGGTGAAACGGATGAACCGTGAAGTCGTGAAGACGTTCCGTGCGGTCCTC AGCGAAAGGCGTCGGTCCCCGGGCGAGTGGCGGTTGGCATGGGGGGCTGT GCAATGGGCTCTCAATTCGGCGAATCGGGAGCACATGGGGACGACGCCAT TTCAGATGATGACAGGTCGACCTCCTGTGAAGGCAATGTCGGTGCTTGCA GGGGAATACGGTGACGGATGGACTGTGGAAGAGTTAGACGTGTCGGGCGA GAAAATGAAGGTCTGGGTCGCTGGTTGGGTCCGAGAGCAGGAATATTTAC GGCGTGACGTGGTGAAGCGCGTTCGTGAGCAGCGTGAGCGTGTCCGAGAG CTGAGTGGTCTTGGACATTTGCCAGTGTTTGAGGTTGGCGATTATGTCTT GGTGGCTTGGGTGCGGAAACCGGGACGTGTGCGTAAGCTCGTACAGACGT GGACTGGACCGTGGCGTGTTTTGCCTGGAGGATCAGAGCATGTTCATGTA GTGGAGGACATTGTCACGGGGGAAACCCAGAAAGTACACGTGGTGCGGAT GCGTCCGTATGCTGATTCGTCTTTGGTTGTGAGGGCAGAGGTCCGCGAAG TATTTGAAATGACCAAGCACCAGGGAGAGTTTGAAATGGCTGACGTGATC AGTGTTGGCAAGGATCCGGCGCGAGTAGGAGAATACCGGGTGAAGATCGC GTGGGTTGGTCTTGAGGATGAGAATCTGACGTGGGAACCGATGTCAACTA TCTACGCCGACGCTCCCAAGTATATAGAGCAGAATCTACGGAAGATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig5298:7724..8773-

>mRNA_H-elongata_contig5298.12626.1 ID=mRNA_H-elongata_contig5298.12626.1|Name=mRNA_H-elongata_contig5298.12626.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at H-elongata_contig5298:7724..8773- (Himanthalia elongata Himel1 dioecious)
ATGGTGTCGTCACGATTGGGGGTGGTCCACCATTTTGGTGTGGCAAATGT
TTCGTGGTCGCAGGGGACGGTGAAACGGATGAACCGTGAAGTCGTGAAGA
CGTTCCGTGCGGTCCTCAGCGAAAGGCGTCGGTCCCCGGGCGAGTGGCGG
TTGGCATGGGGGGCTGTGCAATGGGCTCTCAATTCGGCGAATCGGGAGCA
CATGGGGACGACGCCATTTCAGATGATGACAGGTCGACCTCCTGTGAAGG
CAATGTCGGTGCTTGCAGGGGAATACGGTGACGGATGGACTGTGGAAGAG
TTAGACGTGTCGGGCGAGAAAATGAAGGTCTGGGTCGCTGGTTGGGTCCG
AGAGCAGGAATATTTACGGCGTGACGTGGTGAAGCGCGTTCGTGAGCAGC
GTGAGCGTGTCCGAGAGCTGAGTGGTCTTGGACATTTGCCAGTGTTTGAG
GTTGGCGATTATGTCTTGGTGGCTTGGGTGCGGAAACCGGGACGTGTGCG
TAAGCTCGTACAGACGTGGACTGGACCGTGGCGTGTTTTGCCTGGAGGAT
CAGAGCATGTTCATGTAGTGGAGGACATTGTCACGGGGGAAACCCAGAAA
GTACACGTGGTGCGGATGCGTCCGTATGCTGATTCGTCTTTGGTTGTGAG
GGCAGAGGTCCGCGAAGTATTTGAAATGACCAAGCACCAGGGAGAGTTTG
AAATGGCTGACGTGATCAGTGTTGGCAAGGATCCGGCGCGAGTAGGAGAA
TACCGGGTGAAGATCGCGTGGGTTGGTCTTGAGGATGAGAATCTGACGTG
GGAACCGATGTCAACTATCTACGCCGACGCTCCCAAGTATATAGAGCAGA
ATCTACGGAAGATTTGAATGGTGTCGTCACGATTGGGGGTGGTCCACCAT
TTTGGTGTGGCAAATGTTTCGTGGTCGCAGGGGACGGTGAAACGGATGAA
CCGTGAAGTCGTGAAGACGTTCCGTGCGGTCCTCAGCGAAAGGCGTCGGT
CCCCGGGCGAGTGGCGGTTGGCATGGGGGGCTGTGCAATGGGCTCTCAAT
TCGGCGAATCGGGAGCACATGGGGACGACGCCATTTCAGATGATGACAGG
TCGACCTCCTGTGAAGGCAATGTCGGTGCTTGCAGGGGAATACGGTGACG
GATGGACTGTGGAAGAGTTAGACGTGTCGGGCGAGAAAATGAAGGTCTGG
GTCGCTGGTTGGGTCCGAGAGCAGGAATATTTACGGCGTGACGTGGTGAA
GCGCGTTCGTGAGCAGCGTGAGCGTGTCCGAGAGCTGAGTGGTCTTGGAC
ATTTGCCAGTGTTTGAGGTTGGCGATTATGTCTTGGTGGCTTGGGTGCGG
AAACCGGGACGTGTGCGTAAGCTCGTACAGACGTGGACTGGACCGTGGCG
TGTTTTGCCTGGAGGATCAGAGCATGTTCATGTAGTGGAGGACATTGTCA
CGGGGGAAACCCAGAAAGTACACGTGGTGCGGATGCGTCCGTATGCTGAT
TCGTCTTTGGTTGTGAGGGCAGAGGTCCGCGAAGTATTTGAAATGACCAA
GCACCAGGGAGAGTTTGAAATGGCTGACGTGATCAGTGTTGGCAAGGATC
CGGCGCGAGTAGGAGAATACCGGGTGAAGATCGCGTGGGTTGGTCTTGAG
GATGAGAATCTGACGTGGGAACCGATGTCAACTATCTACGCCGACGCTCC
CAAGTATATAGAGCAGAATCTACGGAAGATTTGA
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