mRNA_H-elongata_contig52902.12615.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52902.12615.1
Unique NamemRNA_H-elongata_contig52902.12615.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52902.12615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52902contigH-elongata_contig52902:55..2041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_001810.1
Exons2
Model size1621
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52902.12615.1prot_H-elongata_contig52902.12615.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52902 1025..1288 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.1799138-UTR-H-elongata_contig52902:54..10241622930864.1799138-UTR-H-elongata_contig52902:54..1024Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52902 55..1024 -
1691679602.9369318-UTR-H-elongata_contig52902:54..10241691679602.9369318-UTR-H-elongata_contig52902:54..1024Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52902 55..1024 -
1622930864.2125254-UTR-H-elongata_contig52902:1288..13521622930864.2125254-UTR-H-elongata_contig52902:1288..1352Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52902 1289..1352 -
1691679602.969922-UTR-H-elongata_contig52902:1288..13521691679602.969922-UTR-H-elongata_contig52902:1288..1352Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52902 1289..1352 -
1622930864.224825-UTR-H-elongata_contig52902:1718..20411622930864.224825-UTR-H-elongata_contig52902:1718..2041Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52902 1719..2041 -
1691679602.9800434-UTR-H-elongata_contig52902:1718..20411691679602.9800434-UTR-H-elongata_contig52902:1718..2041Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52902 1719..2041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.1985388-CDS-H-elongata_contig52902:1024..12881622930864.1985388-CDS-H-elongata_contig52902:1024..1288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52902 1025..1288 -
1691679602.9585395-CDS-H-elongata_contig52902:1024..12881691679602.9585395-CDS-H-elongata_contig52902:1024..1288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52902 1025..1288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52902.12615.1

>prot_H-elongata_contig52902.12615.1 ID=prot_H-elongata_contig52902.12615.1|Name=mRNA_H-elongata_contig52902.12615.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MWTRKRRFDEAAEDGEGEEGRYPAVFVEAAATAAANAVRKSHFAHLGSVA
RRRVEREAFRVRVHEHVQRELRRRSIEAAGVFATAML*
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mRNA from alignment at H-elongata_contig52902:55..2041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52902.12615.1 ID=mRNA_H-elongata_contig52902.12615.1|Name=mRNA_H-elongata_contig52902.12615.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1987bp|location=Sequence derived from alignment at H-elongata_contig52902:55..2041- (Himanthalia elongata Himel1 dioecious)
GACTTGCGTGTATGTATGTATGTATGTTTGTGTGGTCATCACATATATCA
GAGTAAGATCAACCGGATTTGGTTGCCTCCTGCTCGTGGTCAGCTGAACA
GGGAAAAATCATGTTCCTTGTCCCCGTTCGCGCCTGAGAATTGGCCTCGC
GAGACAAGTTCGGCCCGTCCCGTCCTGCGTCAGCCTGCTTATTCTCCCCA
CTCAGGCTGAATCGGGTGCGTACTCCCGGGATCCTCTCGATATTTTCGTT
TTCCGCCATAGTGGCGGCCATCCCTACCGTCAACCGTATAGCACAGCATT
GATCGCTGTCCTCATGACAGGCAGTCGAGTGCTGGCCAACTAGCACTTGT
ACGAGGTAGTGCTGTTGCCGATGCCGTAAGGTGGGTCAACTCGATTAGCG
CAAGAGCTAGTCAATCAATCAAAAGGGGAACGCCTCTTTGTGATTTCTCC
CATTCCTCCAGCCAGGTATCGACGCAAGCCAGCCCCAGTTCCCAGAAAGG
ATCAGAGTGGCTCCCCGCTTGCCCCTCCACACCCCGCGCTTTGCGAACGA
CCCCGTAATCAACAACCTACTGCGTTAGTTACTCCTTTGCGGTGATACGT
CTCTTTTCATCCTGCCGACGATCATCCCGTGTGACACAGGCTAGCAGTGC
ACGCAGGGCAAAATATCGGCGCCGGGAACACCATCATAGAGGCTTCTCCC
CCACCTACTTCGCCAACAACACCTCCACCACAAGCTCGACCTTGTTGAAA
ACGATGTGGACGAGAAAAAGGCGTTTCGATGAAGCGGCGGAGGACGGAGA
GGGGGAAGAAGGAAGATACCCCGCCGTGTTCGTCGAGGCGGCAGCCACGG
CGGCGGCGAACGCCGTTCGGAAGTCGCACTTCGCGCATCTCGGCAGCGTC
GCCCGCCGGCGGGTGGAGCGAGAGGCGTTCAGAGTCAGGGTGCACGAGCA
CGTCCAGAGGGAGCTGAGGAGGCGGAGCATCGAGGCGGCAGGGGTGTTCG
CCACGGCCATGTTGTAAATAAGTTGGTTGCAAAAATGAATTAAAACTACC
CGCGATGTTCAGAAGAAGAGCGCCCCCTCCTCGAGATAAGACGTTTGACT
TTCCCTTTGTATTTTTCGTGATTTTACGGAGAGAAAAGCCGTATGGGAGA
AGCGCGACAGGGTATGCTGCGCAATGCCGTTTTTCGGGGAATAGTAGGGA
GGGGTGGGGGGGGGGAAGGTCTGTCCTCGAAGAAGGATTATCTCTTAACG
TACGCTACTACGCCAGATGGATTGCAGCTTCTGGGAGATGTATGGACGCG
CTAGCTGCTGCGTAAAATGGCAAGGCGTTAGACATATTCTCCACCGACTG
AGAAGAAAGGCGGTTGCCGTCTTGTAGGCGCGGGGAGTTGGAGTTCGTCG
TCGTACGTTGTAACTTTGCGCCGTCCCTGGGAAAGCCACAAGGGGCAAGG
CTTGAACGCTGCTCCGTTTAAAATAATCGTTCGCGCCTTAATTAGCATAT
ACCGTTTTTGTACTTCGCGTGGCGCGGTCAGTTGGTCGTCTCTTGACGTC
ATCACAAGAATAAATTTGCCGTAATTCACAACAAGAGAACTCGGCAGTAC
GCGTAAGTATTTTGAGGCGTGCGTTTGTGGTCATGACATAAAGTAGATTA
TGGATCAACCGGAGGTGTTCGCCAATTCTGCTGGTGGTCAGCTGAAAAGG
AAACATTAAATTTATTTTATGTCCCCACACAGACTGAATCTGATATGGTA
AAATAGGGTGTGTTACTGATCGCATCCCTTAGCTATTTTTATAAATACCA
ACGGCTTCGCCCACATACCCCCCCCCCGGCGATTTGGACACACTGGACCG
CGTCTCACAACGACACGTCAGTCTGTTGTATCATGTCGGGCCTGGATATA
GCCTCTACGAGCAGGCCAGCGTAAGACTCATCGATCGGGTTGCATCCTAG
AAAGAGAACGCGATATGAATATTTTGATTGAATTGAA
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Coding sequence (CDS) from alignment at H-elongata_contig52902:55..2041-

>mRNA_H-elongata_contig52902.12615.1 ID=mRNA_H-elongata_contig52902.12615.1|Name=mRNA_H-elongata_contig52902.12615.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig52902:55..2041- (Himanthalia elongata Himel1 dioecious)
ATGTGGACGAGAAAAAGGCGTTTCGATGAAGCGGCGGAGGACGGAGAGGG
GGAAGAAGGAAGATACCCCGCCGTGTTCGTCGAGGCGGCAGCCACGGCGG
CGGCGAACGCCGTTCGGAAGTCGCACTTCGCGCATCTCGGCAGCGTCGCC
CGCCGGCGGGTGGAGCGAGAGGCGTTCAGAGTCAGGGTGCACGAGCACGT
CCAGAGGGAGCTGAGGAGGCGGAGCATCGAGGCGGCAGGGGTGTTCGCCA
CGGCCATGTTGTAAATGTGGACGAGAAAAAGGCGTTTCGATGAAGCGGCG
GAGGACGGAGAGGGGGAAGAAGGAAGATACCCCGCCGTGTTCGTCGAGGC
GGCAGCCACGGCGGCGGCGAACGCCGTTCGGAAGTCGCACTTCGCGCATC
TCGGCAGCGTCGCCCGCCGGCGGGTGGAGCGAGAGGCGTTCAGAGTCAGG
GTGCACGAGCACGTCCAGAGGGAGCTGAGGAGGCGGAGCATCGAGGCGGC
AGGGGTGTTCGCCACGGCCATGTTGTAA
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