mRNA_H-elongata_contig52749.12589.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52749.12589.1
Unique NamemRNA_H-elongata_contig52749.12589.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52749.12589.1 vs. uniprot
Match: D7G7I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I0_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-7
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 ARLKAELAVFDLGFFEELEDLKYSYAKLKRETEALAKR 114
            A+L++EL VFDLGFFEE+EDLKYSYA L+RE + LA++
Sbjct:  428 AKLRSELEVFDLGFFEEVEDLKYSYASLRREADKLARK 465
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BLAST of mRNA_H-elongata_contig52749.12589.1 vs. uniprot
Match: A0A6H5JNM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-7
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 ARLKAELAVFDLGFFEELEDLKYSYAKLKRETEALAKR 114
            A+L++EL VFDLGFFEE+EDLKYSYA L+RE + LA++
Sbjct:  419 AKLRSELEVFDLGFFEEVEDLKYSYASLRREADKLARK 456
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52749.12589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7I0_ECTSI1.330e-768.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNM1_9PHAE1.330e-768.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52749contigH-elongata_contig52749:1161..1292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.6488442-CDS-H-elongata_contig52749:1160..12921622930861.6488442-CDS-H-elongata_contig52749:1160..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52749 1161..1292 -
1691679601.9104779-CDS-H-elongata_contig52749:1160..12921691679601.9104779-CDS-H-elongata_contig52749:1160..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52749 1161..1292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52749.12589.1prot_H-elongata_contig52749.12589.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52749 1161..1292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52749.12589.1

>prot_H-elongata_contig52749.12589.1 ID=prot_H-elongata_contig52749.12589.1|Name=mRNA_H-elongata_contig52749.12589.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
ARLKAELAVFDLGFFEELEDLKYSYAKLKRETEALAKRKVKNPR
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mRNA from alignment at H-elongata_contig52749:1161..1292-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52749.12589.1 ID=mRNA_H-elongata_contig52749.12589.1|Name=mRNA_H-elongata_contig52749.12589.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig52749:1161..1292- (Himanthalia elongata Himel1 dioecious)
GCCAGGCTTAAGGCCGAGCTTGCAGTGTTCGATCTGGGCTTTTTCGAAGA
GTTAGAAGACCTCAAGTATAGCTACGCTAAGCTAAAGCGGGAGACGGAAG
CGTTAGCGAAAAGGAAGGTGAAGAACCCCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig52749:1161..1292-

>mRNA_H-elongata_contig52749.12589.1 ID=mRNA_H-elongata_contig52749.12589.1|Name=mRNA_H-elongata_contig52749.12589.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig52749:1161..1292- (Himanthalia elongata Himel1 dioecious)
GCCAGGCTTAAGGCCGAGCTTGCAGTGTTCGATCTGGGCTTTTTCGAAGA
GTTAGAAGACCTCAAGTATAGCTACGCTAAGCTAAAGCGGGAGACGGAAG
CGTTAGCGAAAAGGAAGGTGAAGAACCCCCGCGCCAGGCTTAAGGCCGAG
CTTGCAGTGTTCGATCTGGGCTTTTTCGAAGAGTTAGAAGACCTCAAGTA
TAGCTACGCTAAGCTAAAGCGGGAGACGGAAGCGTTAGCGAAAAGGAAGG
TGAAGAACCCCCGC
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