mRNA_H-elongata_contig52632.12572.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52632.12572.1
Unique NamemRNA_H-elongata_contig52632.12572.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Match: A0A836CIH5_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH5_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.740e-31
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    1 KYQGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLKDVSRRVSGKDHHLLPAIAAGALTDLVTNPLWVVRTRMQTQ 261
            KY G+ P L TI  EEGI+GWY+G+TPALV VP+FWGIYF  YE  K   RR +G + H+L A+A    TD +TNP WVVRTRMQTQ
Sbjct:   54 KYTGVCPTLKTILAEEGIQGWYKGITPALVIVPVFWGIYFGVYEHSKGFFRRTTGNEQHVLSAMATSGFTDTITNPFWVVRTRMQTQ 140
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BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Match: A0A835Z5U5_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U5_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.910e-31
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:    1 KYQGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLKDVSRRVSGKDHHLLPAIAAGALTDLVTNPLWVVRTRMQTQ 261
            KY+G+ P L TI  EEG+RGWY+G+TPALV VPIFWGIYF  YER K     V+G + H+L AI+AG + D+ TNP WVVRTRMQTQ
Sbjct:   60 KYRGVLPTLRTILAEEGVRGWYQGITPALVIVPIFWGIYFGVYERAKRGFVSVTGAEQHVLSAISAGLVADVCTNPFWVVRTRMQTQ 146
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BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Match: A0A7S3Y9R4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9R4_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 8.450e-24
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    7 QGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLKD--VSRRVSGKDH---HLLPAIAAGALTDLVTNPLWVVRTRMQTQ 261
            QG+   L  I  EEG+RGWY+G+ PA+++VP+FWGIYF  YE++K   V   +  K+    HL+ A++AG   D+VTNP+WVVRTR+QTQ
Sbjct:   42 QGLIGTLKHIRAEEGVRGWYKGIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQ 131
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BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Match: A0A7S3VXV9_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VXV9_EMIHU)

HSP 1 Score: 98.6 bits (244), Expect = 1.040e-23
Identity = 49/92 (53.26%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 KYQGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLKDVSRRVSGKDH-----HLLPAIAAGALTDLVTNPLWVVRTRMQTQ 261
            +Y G+  AL  I++EEGIRGWY GLTP+L SV IFW  YF  YE  K    R SG        HL  A  AG +TD++TNP WVVRTR+ TQ
Sbjct:   78 RYDGVLSALRLIYREEGIRGWYHGLTPSLCSVGIFWACYFPCYEHAKSAIARGSGASGESPGVHLTAAGLAGLVTDVITNPFWVVRTRLTTQ 169
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BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Match: A0A7S3STG0_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3STG0_9SPIT)

HSP 1 Score: 100 bits (250), Expect = 1.150e-23
Identity = 50/92 (54.35%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 KYQGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLKDVSRRVSGKDH-----HLLPAIAAGALTDLVTNPLWVVRTRMQTQ 261
            KY G+  AL TI++EEG+RGWY GLTP + SV IFW  YF  YE  K      SG        HL  A +AG +TD+VTNPLWVVRTR+ TQ
Sbjct:    8 KYDGVLRALTTIYREEGVRGWYHGLTPTICSVAIFWSCYFPCYEYAKTHIAEASGSTPESPRVHLAAAGSAGLITDVVTNPLWVVRTRLTTQ 99
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BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Match: A0A7S0NRK6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NRK6_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 4.600e-23
Identity = 49/92 (53.26%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 KYQGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLKD--VSRRVSGKDH---HLLPAIAAGALTDLVTNPLWVVRTRMQTQ 261
            KY+G+  AL TI++EEG+RGWY+G+TP + SV +FW  YF  Y+  K    S   SG D    H+  A  +G LTD+VTNPLWVVRTRM TQ
Sbjct:   73 KYRGVFGALRTIYQEEGVRGWYQGITPMIFSVGVFWSCYFPCYDYAKSSIASSSGSGADSSFVHISAAGLSGLLTDVVTNPLWVVRTRMATQ 164
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BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Match: A0A6U0PVR8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A6U0PVR8_9VIRI)

HSP 1 Score: 97.8 bits (242), Expect = 2.480e-22
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    4 YQGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLKDVSRRVSGKD-----HHLLPAIAAGALTDLVTNPLWVVRTRMQT 258
            Y G+   L  I+ +EG+RGW+RGL P+LV+VP+FW +YF  Y+  K   R  SG D      HL  A++AGA+ DL+TNPLWV+RTR+QT
Sbjct:   97 YTGVVAPLRHIYTQEGVRGWFRGLVPSLVNVPVFWSLYFPMYDAAKQAVRS-SGWDLPETMEHLAGAVSAGAVCDLITNPLWVLRTRLQT 185
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BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Match: A0A7R9UD11_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD11_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.590e-22
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    4 YQGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLKDVSRRVSGKD----HHLLPAIAAGALTDLVTNPLWVVRTRMQTQ 261
            Y+GI   + TI+ EEG  G+YRGL PAL +VPIFWG+YF  YE LK + RR  G+       +  AI AGA+ D+ TNPLWVVRTRMQTQ
Sbjct:  117 YKGILRTVRTIFAEEGFAGFYRGLGPALFTVPIFWGLYFPTYEALKSLLRR-DGQQLTTAEIVSAAIGAGAIVDVATNPLWVVRTRMQTQ 205
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BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Match: A0A7S1XSX1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSX1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.330e-21
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    4 YQGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLK-DVSRRVSGKD----HHL-LPAIAAGALTDLVTNPLWVVRTRMQTQ 261
            Y GI   + T+  EEG  G+YRGLTPALV+VPIFWG+YF  YE LK  +  R  G++    H + L A+ AG + D+ TNPLWVVRTRMQTQ
Sbjct:  113 YHGILRTVRTMVMEEGAAGFYRGLTPALVTVPIFWGLYFPTYEGLKATLEARNPGRERLQTHEIILAAMGAGIIVDITTNPLWVVRTRMQTQ 204
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BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Match: A0A7S2AZA3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZA3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.990e-21
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 KYQGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLK-DVSRR----VSGKDHHLLPAIAAGALTDLVTNPLWVVRTRMQTQ 261
            KY GI  +L TI  EEGI+GW+RG T A+++VP+FW  YF  YE +K ++S R    V+     +  A+ AG +TD +TNPLWV+RTR+ TQ
Sbjct:   54 KYHGIVRSLRTILAEEGIKGWFRGYTTAVMTVPLFWACYFPTYEFMKTELSSRTSLPVTSTPVRVSAAMCAGVITDTLTNPLWVIRTRLVTQ 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52632.12572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIH5_9STRA1.740e-3160.92Mitochondrial carrier domain-containing protein n=... [more]
A0A835Z5U5_9STRA4.910e-3163.22Mitochondrial carrier domain-containing protein n=... [more]
A0A7S3Y9R4_HETAK8.450e-2451.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3VXV9_EMIHU1.040e-2353.26Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S3STG0_9SPIT1.150e-2354.35Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S0NRK6_9EUKA4.600e-2353.26Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A6U0PVR8_9VIRI2.480e-2251.11Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7R9UD11_9STRA2.590e-2256.67Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XSX1_9STRA1.330e-2155.43Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S2AZA3_9STRA5.990e-2148.91Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52632contigH-elongata_contig52632:2360..2620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.3
Seed ortholog evalue7.8e-15
Seed eggNOG ortholog248742.XP_005644233.1
KEGG koko:K15115
KEGG TC2.A.29.10.1,2.A.29.10.2,2.A.29.10.3,2.A.29.10.5
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0006862,GO:0008150,GO:0015215,GO:0015605,GO:0015748,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0035352,GO:0043132,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051724,GO:0055085,GO:0071702,GO:0071705,GO:1901679
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGs34H9F@3041,37MF2@33090,COG4266@1,KOG0757@2759
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.7158742-CDS-H-elongata_contig52632:2359..26201622930859.7158742-CDS-H-elongata_contig52632:2359..2620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52632 2360..2620 +
1691679601.0745192-CDS-H-elongata_contig52632:2359..26201691679601.0745192-CDS-H-elongata_contig52632:2359..2620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52632 2360..2620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52632.12572.1prot_H-elongata_contig52632.12572.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52632 2360..2620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52632.12572.1

>prot_H-elongata_contig52632.12572.1 ID=prot_H-elongata_contig52632.12572.1|Name=mRNA_H-elongata_contig52632.12572.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
KYQGITPALLTIWKEEGIRGWYRGLTPALVSVPIFWGIYFYAYERLKDVS
RRVSGKDHHLLPAIAAGALTDLVTNPLWVVRTRMQTQ
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mRNA from alignment at H-elongata_contig52632:2360..2620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52632.12572.1 ID=mRNA_H-elongata_contig52632.12572.1|Name=mRNA_H-elongata_contig52632.12572.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig52632:2360..2620+ (Himanthalia elongata Himel1 dioecious)
AAGTACCAAGGTATCACGCCGGCGCTTTTGACAATCTGGAAAGAGGAAGG
GATCCGTGGGTGGTACAGGGGGCTGACCCCCGCCCTCGTCTCCGTGCCTA
TATTCTGGGGGATCTACTTTTACGCCTACGAGCGGTTGAAAGACGTCTCC
AGGCGCGTGTCCGGAAAAGACCACCACCTACTCCCGGCGATCGCTGCGGG
GGCGCTAACGGACCTTGTCACCAACCCTCTCTGGGTAGTCCGGACGAGAA
TGCAAACGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig52632:2360..2620+

>mRNA_H-elongata_contig52632.12572.1 ID=mRNA_H-elongata_contig52632.12572.1|Name=mRNA_H-elongata_contig52632.12572.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig52632:2360..2620+ (Himanthalia elongata Himel1 dioecious)
AAGTACCAAGGTATCACGCCGGCGCTTTTGACAATCTGGAAAGAGGAAGG
GATCCGTGGGTGGTACAGGGGGCTGACCCCCGCCCTCGTCTCCGTGCCTA
TATTCTGGGGGATCTACTTTTACGCCTACGAGCGGTTGAAAGACGTCTCC
AGGCGCGTGTCCGGAAAAGACCACCACCTACTCCCGGCGATCGCTGCGGG
GGCGCTAACGGACCTTGTCACCAACCCTCTCTGGGTAGTCCGGACGAGAA
TGCAAACGCAGAAGTACCAAGGTATCACGCCGGCGCTTTTGACAATCTGG
AAAGAGGAAGGGATCCGTGGGTGGTACAGGGGGCTGACCCCCGCCCTCGT
CTCCGTGCCTATATTCTGGGGGATCTACTTTTACGCCTACGAGCGGTTGA
AAGACGTCTCCAGGCGCGTGTCCGGAAAAGACCACCACCTACTCCCGGCG
ATCGCTGCGGGGGCGCTAACGGACCTTGTCACCAACCCTCTCTGGGTAGT
CCGGACGAGAATGCAAACGCAG
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