mRNA_H-elongata_contig525.12554.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig525.12554.1
Unique NamemRNA_H-elongata_contig525.12554.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 9.080e-36
Identity = 68/116 (58.62%), Postives = 88/116 (75.86%), Query Frame = 1
Query:  187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
            V +TNFY RL+ ATIGP+VVLGALA+ + ++  RN HS   ++ A +KHLS+ +F++F++YSSVS+ IFQTFVC+ +D GV YLRADY L C TDTH A   YAG+M  VYP GIP
Sbjct:  112 VVDTNFYGRLLFATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIP 227          
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 7.340e-33
Identity = 65/116 (56.03%), Postives = 87/116 (75.00%), Query Frame = 1
Query:  187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
            V++TNFY+RL++ATIGP++VLG L   + +A  RN H   AMR    +HLSV +F++F++Y++VSYTIF+TFVCD +D G +YLRADY L C T  H A+  YAG+  LVYPVGIP
Sbjct:  768 VYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIP 883          
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 9.980e-33
Identity = 65/116 (56.03%), Postives = 87/116 (75.00%), Query Frame = 1
Query:  187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
            V++TNFY+RL++ATIGP++VLG L   + +A  RN H   AMR    +HLSV +F++F++Y++VSYTIF+TFVCD +D G +YLRADY L C T  H A+  YAG+  LVYPVGIP
Sbjct:  749 VYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIP 864          
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.270e-32
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1
Query:  187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
            + + NFY RL   T+GP+VV G LA  + ++  RN HS   M+ A +KHLS+ +F+ F++YSSVS+ IFQTFVC+ +D GV YLRADY L C T  H A M YAG+M LVYPVGIP
Sbjct:  788 IVDVNFYGRLFFTTVGPLVVFGGLAATYAISRSRNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIP 903          
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.880e-31
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 1
Query:  187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
            V ETNFY RL  +T+ P+ +LG LA  H +A   N HS   MR A +KHLS+ +F++F  YSSVS+TIFQTF+C+ +D  V YLRADY L C T TH     YAG+M LVYP+GIP
Sbjct:   70 VVETNFYGRLAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIP 185          
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.050e-31
Identity = 64/114 (56.14%), Postives = 80/114 (70.18%), Query Frame = 1
Query:  193 ETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
            ETNFY RL  +TI P+ +LG LA  H +A   N HS   MR A +KHLS+ +F++F +YSSVS+TIFQTF+C+ +D  V YLRADY L C T TH     YAG+M LVYP+GIP
Sbjct:   94 ETNFYGRLAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIP 207          
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.320e-31
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
            + ++NFY     ATI P+VV GA A+ + ++  RN HS   M+ A +KHLS+ +F++F++YSSV + IFQTFVC+ +D+G+ YLRADY L C T  HKA M YAG+M  VYPVGIP
Sbjct:   77 IVDSNFYGCRFFATICPLVVFGAQAVTYTVSKSRNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIP 192          
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.980e-29
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
            V  T+F++RL++ATIGP+VVL  LA+   +   RN  S  A+R   NKHLS  +F++F +YSSVS+T+FQTFVCD +D GV+YLRADY L C T  + AF  YA +M  VYP+GIP
Sbjct:  760 VVITDFFDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIP 875          
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.780e-28
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
            V +T+FY+RL+L TI P VVLG L           G +  AM V  ++HLSV +F++F++Y++VSYTIF+TFVCD +D G +YLR+DY L C T+TH A+  YAG+M LVYPVGIP
Sbjct:  773 VCDTDFYDRLLLTTICPAVVLGLL-----------GCTYLAMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIP 877          
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 9.100e-26
Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  193 ETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVAN--NKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
            + +F++RL+L T+GP+V +G L + +R+AV RNG +       N  +KHLS ++ L F++YSSVS T+FQTF C+ +D G+ YLR DY + C    HKAF  YAGIM +VYPVGIP
Sbjct:  767 DIDFHDRLLLGTLGPLVAVGFLVMTYRVAVRRNGTAGGQTPADNTRHKHLSALLLLTFLIYSSVSSTVFQTFACETLDDGIEYLRVDYTIHCTDAKHKAFEVYAGIMVVVYPVGIP 882          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF7_ECTSI9.080e-3658.62Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7FTT9_ECTSI7.340e-3356.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE9.980e-3356.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI3_9PHAE3.270e-3255.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB5_ECTSI1.880e-3155.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHA3_9PHAE2.050e-3156.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8S0_ECTSI3.320e-3152.59Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5JSF5_9PHAE3.980e-2954.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI6.780e-2853.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7J9_9PHAE9.100e-2650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig525contigH-elongata_contig525:13623..14339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue3.5e-19
Seed eggNOG ortholog2880.D7FTU5
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size534
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig525.12554.1prot_H-elongata_contig525.12554.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig525 13623..13847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.57392-CDS-H-elongata_contig525:13622..138471622930857.57392-CDS-H-elongata_contig525:13622..13847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig525 13623..13847 -
1691679600.0575166-CDS-H-elongata_contig525:13622..138471691679600.0575166-CDS-H-elongata_contig525:13622..13847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig525 13623..13847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.5908568-UTR-H-elongata_contig525:13847..139701622930857.5908568-UTR-H-elongata_contig525:13847..13970Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig525 13848..13970 -
1691679600.0666962-UTR-H-elongata_contig525:13847..139701691679600.0666962-UTR-H-elongata_contig525:13847..13970Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig525 13848..13970 -
1622930857.6160557-UTR-H-elongata_contig525:13990..140751622930857.6160557-UTR-H-elongata_contig525:13990..14075Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig525 13991..14075 -
1691679600.074539-UTR-H-elongata_contig525:13990..140751691679600.074539-UTR-H-elongata_contig525:13990..14075Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig525 13991..14075 -
1622930857.6376925-UTR-H-elongata_contig525:14238..143391622930857.6376925-UTR-H-elongata_contig525:14238..14339Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig525 14239..14339 -
1691679600.0820048-UTR-H-elongata_contig525:14238..143391691679600.0820048-UTR-H-elongata_contig525:14238..14339Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig525 14239..14339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig525.12554.1

>prot_H-elongata_contig525.12554.1 ID=prot_H-elongata_contig525.12554.1|Name=mRNA_H-elongata_contig525.12554.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLE
CLTDTHKAFMTYAGIMTLVYPVGIP
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mRNA from alignment at H-elongata_contig525:13623..14339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig525.12554.1 ID=mRNA_H-elongata_contig525.12554.1|Name=mRNA_H-elongata_contig525.12554.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=717bp|location=Sequence derived from alignment at H-elongata_contig525:13623..14339- (Himanthalia elongata Himel1 dioecious)
GGTGGGAGAGGTGGCTCTTGGACTTCCGAGATATGGTTGTACGCGCCATC CCGCTCACCGCTATCAAGATCGTGTTTATTACGTGGCAGATCATCACGCA GGTAAGGTTTAGTACTCTCCAATGGAGTCACGATTGTATATAACGTATAT GTAAGCTGTGTAATATAGGAGCTGGTGCATGCACGAAGCCAGCCTAGGGG GTCGTCTTCGATCTCATTTTACGCTTCCGTACTTTGTGCCGTAATTCTCC CCTAAATGGCACAGATTTCCGGTGTGATGACCGTCGAGTACCCTCCAGCG TACGAAAACTTCCTGGCAGCTCTGAGCGTTGTCAATTTGAATCTGGGGTC TGTCCTGTCACTTTCGTGTGTCTTCGAGACCAATTTTTATGAACGCCTCG TTTTGGCAACTATTGGGCCGATCGTAGTGCTTGGTGCGCTGGCGATTATC CACCGGTTGGCAGTAATACGGAATGGCCACTCGATCCGCGCGATGAGGGT GGCAAATAATAAGCACCTCTCCGTCGTAGTGTTTCTACTCTTTATCTTGT ATTCTTCTGTGTCTTACACGATCTTCCAGACGTTCGTTTGCGATCTTATG GATTCCGGGGTAGCCTATCTGCGCGCCGATTACGGCCTTGAGTGCTTGAC CGATACCCACAAAGCCTTCATGACGTACGCAGGAATCATGACACTAGTGT ATCCAGTTGGAATCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig525:13623..14339-

>mRNA_H-elongata_contig525.12554.1 ID=mRNA_H-elongata_contig525.12554.1|Name=mRNA_H-elongata_contig525.12554.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig525:13623..14339- (Himanthalia elongata Himel1 dioecious)
ATGAGGGTGGCAAATAATAAGCACCTCTCCGTCGTAGTGTTTCTACTCTT
TATCTTGTATTCTTCTGTGTCTTACACGATCTTCCAGACGTTCGTTTGCG
ATCTTATGGATTCCGGGGTAGCCTATCTGCGCGCCGATTACGGCCTTGAG
TGCTTGACCGATACCCACAAAGCCTTCATGACGTACGCAGGAATCATGAC
ACTAGTGTATCCAGTTGGAATCCCGATGAGGGTGGCAAATAATAAGCACC
TCTCCGTCGTAGTGTTTCTACTCTTTATCTTGTATTCTTCTGTGTCTTAC
ACGATCTTCCAGACGTTCGTTTGCGATCTTATGGATTCCGGGGTAGCCTA
TCTGCGCGCCGATTACGGCCTTGAGTGCTTGACCGATACCCACAAAGCCT
TCATGACGTACGCAGGAATCATGACACTAGTGTATCCAGTTGGAATCCCG
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