mRNA_H-elongata_contig52134.12503.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52134.12503.1
Unique NamemRNA_H-elongata_contig52134.12503.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Match: D8LIC7_ECTSI (Intraflagellar transport protein 80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC7_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 4.920e-99
Identity = 149/184 (80.98%), Postives = 163/184 (88.59%), Query Frame = 1 
Query:    1 VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHSRNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILVNPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFNWNTPHILDMRSGASLIVQAETHFLTLDISQGVQV 552
            VWDSFGRQ++QSGGLGY ITSVKWCPNGE+FAVGAFNTLRLCDKTGWSHSR+RPQSGS+TSLTWT DGTQLAAAG NG VV GQVIER LEW  FEA+LV+P KI+VSDV SE+VE+L+F GGRV+EMSL FGHLVAAT NQV IYSV NWNTP+ILDMR   SLIVQAET FLTLD  QGVQ+
Sbjct:  207 VWDSFGRQMFQSGGLGYTITSVKWCPNGETFAVGAFNTLRLCDKTGWSHSRDRPQSGSLTSLTWTPDGTQLAAAGGNGSVVFGQVIERSLEWDIFEAVLVSPFKIKVSDVGSEVVEELDFSGGRVVEMSLGFGHLVAATHNQVLIYSVTNWNTPYILDMRGATSLIVQAETQFLTLDTVQGVQI 390
[Close]
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Match: A0A7S2G6X5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6X5_9STRA)

HSP 1 Score: 233 bits (594), Expect = 3.560e-69
Identity = 110/182 (60.44%), Postives = 132/182 (72.53%), Query Frame = 1 
Query:    1 VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHSRNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILVNPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFNWNTPHILDMRSGASLIVQAETHFLTLDISQGV 546
            VWD++GRQL+QS      ITS+ WCPNGE FAVGAFN+LRLCDKTGWS+SR +PQSGSI  + WT DGTQLA AG NG VV  Q+++R LEW NFE  L+ P  I V D S +  E LEF   RV+EM+L +GHLV AT  Q FIY V NWNTPHI D+R+  SLI  A+ +FLT+D + GV
Sbjct:  213 VWDAYGRQLFQSQPNASVITSISWCPNGECFAVGAFNSLRLCDKTGWSYSREQPQSGSIMEIAWTSDGTQLAGAGGNGSVVFAQLVQRKLEWENFEVTLIEPKLINVQDASIDQYERLEFPRERVVEMALGWGHLVVATATQCFIYGVNNWNTPHIFDLRATPSLISLADGYFLTMDPTHGV 394
[Close]
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Match: A0A8K1CRT4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRT4_PYTOL)

HSP 1 Score: 229 bits (583), Expect = 1.260e-67
Identity = 104/184 (56.52%), Postives = 131/184 (71.20%), Query Frame = 1 
Query:    1 VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHSRNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILVNPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFNWNTPHILDMRSGASLIVQAETHFLTLDISQGVQV 552
            VWD+FGRQLYQS  +G+ ITSV WCPNGE+FAVG++N LRLCDKTGWS+ R RP+ GS+  + W  D TQL  AG NG  V  QV++R L W   E  LV+P KI V DV +E +E+++F+  RVIEMS   G L+  T  Q FIY+  NWNTPHI D+RS  +LI+Q+E HFLT+D   G+QV
Sbjct:  209 VWDAFGRQLYQSPAVGHVITSVAWCPNGETFAVGSYNMLRLCDKTGWSYCRERPKCGSLMDIAWASDSTQLVGAGGNGATVFAQVVDRVLSWNKIEIKLVDPRKIHVHDVMNETLEEIDFVRDRVIEMSFGHGFLIVCTATQCFIYNSQNWNTPHIFDLRSTVNLIIQSECHFLTVDNFNGLQV 392
[Close]
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Match: A0A0P1B1S3_PLAHL (WD40 repeat-containing protein CHE-2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1S3_PLAHL)

HSP 1 Score: 225 bits (573), Expect = 3.500e-66
Identity = 105/184 (57.07%), Postives = 128/184 (69.57%), Query Frame = 1 
Query:    1 VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHSRNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILVNPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFNWNTPHILDMRSGASLIVQAETHFLTLDISQGVQV 552
            VWD+FGRQLYQS    + ITS+ WCPNG  FAVG++N LRLCD+TGWS+ R RPQSGS+  L W+ D TQL AAG NG  V  QV+ R L W   E  LV+P KI V DV +E +E+L+F   RV+EMS A G LV  T  Q FIY   +WNTPHI D+R+  SL+VQ+E HFLT+D   G+QV
Sbjct:  209 VWDAFGRQLYQSPAGEHVITSIAWCPNGNCFAVGSYNLLRLCDQTGWSYCRQRPQSGSLMDLAWSSDSTQLVAAGGNGATVFAQVVGRMLPWKKVEVTLVDPRKIHVHDVVNETLEELDFARDRVVEMSFAHGFLVVCTATQCFIYDAQSWNTPHIFDLRAAVSLLVQSENHFLTVDHFNGIQV 392
[Close]
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Match: A0A2D4BW51_PYTIN (Intraflagellar Transport protein 80 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW51_PYTIN)

HSP 1 Score: 227 bits (579), Expect = 3.520e-66
Identity = 104/184 (56.52%), Postives = 130/184 (70.65%), Query Frame = 1 
Query:    1 VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHSRNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILVNPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFNWNTPHILDMRSGASLIVQAETHFLTLDISQGVQV 552
            VWD+FGRQLYQS    + ITSV WCPNGE+FAVG++N LRLCDKTGWS+ R RP  GS+  + W  D TQL AAG NG  V  QV+ER L W   E  LV+P KI V DV +E +E+++F+  RVIEMS  +G L+  T  Q FIY+  NWNTPHI D+R+  +LIVQ+E HF+T+D   G+QV
Sbjct:  209 VWDAFGRQLYQSSAGEHVITSVAWCPNGETFAVGSYNLLRLCDKTGWSYCRERPNCGSLMDIAWASDSTQLVAAGGNGATVFAQVVERVLAWNKIEIKLVDPRKIHVHDVMNETLEEIDFVRDRVIEMSFGYGFLIVCTATQCFIYNSQNWNTPHIFDLRTTVNLIVQSECHFITVDNFNGIQV 392
[Close]
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Match: H3GA28_PHYRM (Uncharacterized protein n=27 Tax=Peronosporaceae TaxID=4777 RepID=H3GA28_PHYRM)

HSP 1 Score: 224 bits (572), Expect = 4.880e-66
Identity = 105/184 (57.07%), Postives = 128/184 (69.57%), Query Frame = 1 
Query:    1 VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHSRNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILVNPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFNWNTPHILDMRSGASLIVQAETHFLTLDISQGVQV 552
            VWD+FGRQLYQS    + +TSV WCPNG  FAVG++N LRLCD+TGWS+ R RPQSGS+  L W  D TQL AAG NG  V  QV+ R L W   E  LV+P KI V DV +E +E+L+F   RV+EMS A G LV  T  Q FIY   +WNTPHI D+R+  SL+VQ+E+HFLT+D   G+QV
Sbjct:  209 VWDAFGRQLYQSPAGEHVVTSVAWCPNGSCFAVGSYNMLRLCDQTGWSYCRQRPQSGSLMDLAWASDSTQLIAAGGNGATVFAQVVGRILPWKKVEVTLVDPRKIHVHDVVNETLEELDFARDRVVEMSFAHGFLVVCTATQCFIYDAQSWNTPHIFDLRAAVSLLVQSESHFLTVDNFNGIQV 392
[Close]
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Match: A0A835ZN10_9STRA (Intraflagellar transport protein 80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZN10_9STRA)

HSP 1 Score: 224 bits (571), Expect = 7.000e-66
Identity = 99/184 (53.80%), Postives = 131/184 (71.20%), Query Frame = 1 
Query:    1 VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHSRNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILVNPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFNWNTPHILDMRSGASLIVQAETHFLTLDISQGVQV 552
            VWD+FGR L+ S  LG+ +T+V W P GE+FAVGAFN LR+CD+TGW+ +R RPQ GS+ ++ W  DGTQL   G NG +VV QV+ R L W  +EA+LV   K+ ++DV  E  E+LEF   RV++M+L  GHLV AT +Q ++Y+  NWNTPHILDMR+ ASL+  A  HFLT+D   GVQ+
Sbjct:  207 VWDAFGRALFASAPLGHVVTAVAWAPGGEAFAVGAFNALRVCDRTGWTRARERPQCGSVMAIAWAADGTQLVGGGGNGKLVVAQVVGRSLHWDRYEAVLVESHKVAIADVGGETREELEFARDRVVDMALGHGHLVVATASQCYVYAAPNWNTPHILDMRAPASLLALAAKHFLTVDALSGVQI 390
[Close]
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Match: K3WVM6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVM6_GLOUD)

HSP 1 Score: 224 bits (570), Expect = 9.240e-66
Identity = 102/184 (55.43%), Postives = 130/184 (70.65%), Query Frame = 1 
Query:    1 VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHSRNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILVNPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFNWNTPHILDMRSGASLIVQAETHFLTLDISQGVQV 552
            VWD+FGRQLYQS    + ITS+ WCPNG +FAVG++N LRLCDKTGWS+ R RP+ GS+  + W  D TQL AAG NG  V  QVIER + W   E  LV+P KI V DV +E +E+++F+  RVIEMS  FG L+  T  Q FIY+  NWNTPHI D+R+  +LI+Q+E HF+T+D   G+QV
Sbjct:  208 VWDAFGRQLYQSPAGEHVITSIAWCPNGGTFAVGSYNMLRLCDKTGWSYCRERPKCGSLMDIAWASDSTQLVAAGGNGATVFAQVIERVVTWNKIEIKLVDPRKIHVHDVMNETLEEIDFVRDRVIEMSFGFGFLIVCTATQCFIYNSQNWNTPHIFDLRATVNLIIQSECHFITVDNFNGIQV 391
[Close]
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Match: A0A485L4J2_9STRA (Aste57867_15463 protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A485L4J2_9STRA)

HSP 1 Score: 224 bits (570), Expect = 9.890e-66
Identity = 101/184 (54.89%), Postives = 130/184 (70.65%), Query Frame = 1 
Query:    1 VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHSRNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILVNPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFNWNTPHILDMRSGASLIVQAETHFLTLDISQGVQV 552
            VWD FGRQLYQS    + ITS+ W P G++FAVGAFN LRLCDKTGWS+ R RP+SGS+  + W  DGTQL AAG NG  V  QV++R L+W   E  L +P KI V DV +E VE+L+F+  RVI+MSL +G L+  T  Q FIY+  NWNTPHI D+R+  + I+Q+E HF+T+D   G+Q+
Sbjct:  209 VWDGFGRQLYQSPVCEHVITSIAWSPKGDTFAVGAFNMLRLCDKTGWSYCRERPKSGSLMDIAWASDGTQLVAAGGNGATVFAQVVDRHLQWNKIEVTLKDPRKIHVHDVLNETVEELDFVRDRVIDMSLGYGFLIVCTATQCFIYNFQNWNTPHIFDLRAAVNFILQSECHFITVDNFYGIQI 392
[Close]
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Match: A0A6G0X3K3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3K3_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.900e-65
Identity = 102/184 (55.43%), Postives = 126/184 (68.48%), Query Frame = 1 
Query:    1 VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHSRNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILVNPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFNWNTPHILDMRSGASLIVQAETHFLTLDISQGVQV 552
            VWD FGRQLYQS    + I+S+ W P GE FAVGAFN LRLCDKTGWS+SR RP  GS+  + W  DGTQL AAG NG  +  QV+ER L+W   E  L  P KI V DV +E VE+L+F   RVIEMSL +G L+  T  Q F+Y+  NWNTPHI D+R+  + I+Q+E HFLT+D   G+Q+
Sbjct:  209 VWDGFGRQLYQSPVCDHVISSISWSPKGELFAVGAFNMLRLCDKTGWSYSRERPTCGSLMDIAWASDGTQLVAAGGNGATLFAQVVERHLQWNKIEVTLKEPRKIHVHDVLNETVEELDFARDRVIEMSLGYGFLIVCTATQCFLYNFQNWNTPHIFDLRAAVNFIIQSECHFLTVDNFAGIQI 392
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52134.12503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIC7_ECTSI4.920e-9980.98Intraflagellar transport protein 80 n=2 Tax=Ectoca... [more]
A0A7S2G6X5_9STRA3.560e-6960.44Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1CRT4_PYTOL1.260e-6756.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1B1S3_PLAHL3.500e-6657.07WD40 repeat-containing protein CHE-2 n=1 Tax=Plasm... [more]
A0A2D4BW51_PYTIN3.520e-6656.52Intraflagellar Transport protein 80 n=1 Tax=Pythiu... [more]
H3GA28_PHYRM4.880e-6657.07Uncharacterized protein n=27 Tax=Peronosporaceae T... [more]
A0A835ZN10_9STRA7.000e-6653.80Intraflagellar transport protein 80 n=1 Tax=Tribon... [more]
K3WVM6_GLOUD9.240e-6655.43Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A485L4J2_9STRA9.890e-6654.89Aste57867_15463 protein n=9 Tax=Aphanomyces TaxID=... [more]
A0A6G0X3K3_9STRA1.900e-6555.43Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52134contigH-elongata_contig52134:1981..3376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue1.4e-82
Seed eggNOG ortholog2880.D8LIC7
Preferred nameIFT80
KEGG koko:K19678
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006935,GO:0006996,GO:0007275,GO:0008150,GO:0009593,GO:0009605,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0017015,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0030990,GO:0030992,GO:0032501,GO:0032502,GO:0032991,GO:0036064,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040017,GO:0040018,GO:0040024,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045927,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051606,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090325,GO:0090326,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903844,GO:1903845,GO:1905515
EggNOG free text desc.cilium assembly
EggNOG OGsCOG2319@1,KOG1524@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size552
Cds size552
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52134.12503.1prot_H-elongata_contig52134.12503.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52134 1981..3376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.429921-CDS-H-elongata_contig52134:1980..21381622930852.429921-CDS-H-elongata_contig52134:1980..2138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52134 1981..2138 +
1691679598.1030066-CDS-H-elongata_contig52134:1980..21381691679598.1030066-CDS-H-elongata_contig52134:1980..2138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52134 1981..2138 +
1622930852.448669-CDS-H-elongata_contig52134:2402..25321622930852.448669-CDS-H-elongata_contig52134:2402..2532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52134 2403..2532 +
1691679598.1138532-CDS-H-elongata_contig52134:2402..25321691679598.1138532-CDS-H-elongata_contig52134:2402..2532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52134 2403..2532 +
1622930852.4626439-CDS-H-elongata_contig52134:2969..31071622930852.4626439-CDS-H-elongata_contig52134:2969..3107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52134 2970..3107 +
1691679598.1245112-CDS-H-elongata_contig52134:2969..31071691679598.1245112-CDS-H-elongata_contig52134:2969..3107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52134 2970..3107 +
1622930852.4763172-CDS-H-elongata_contig52134:3250..33761622930852.4763172-CDS-H-elongata_contig52134:3250..3376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52134 3251..3376 +
1691679598.1320293-CDS-H-elongata_contig52134:3250..33761691679598.1320293-CDS-H-elongata_contig52134:3250..3376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52134 3251..3376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52134.12503.1

>prot_H-elongata_contig52134.12503.1 ID=prot_H-elongata_contig52134.12503.1|Name=mRNA_H-elongata_contig52134.12503.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp
VWDSFGRQLYQSGGLGYAITSVKWCPNGESFAVGAFNTLRLCDKTGWSHS
RNRPQSGSITSLTWTLDGTQLAAAGANGDVVVGQVIERFLEWGNFEAILV
NPGKIRVSDVSSEMVEDLEFLGGRVIEMSLAFGHLVAATQNQVFIYSVFN
WNTPHILDMRSGASLIVQAETHFLTLDISQGVQV
back to top

mRNA from alignment at H-elongata_contig52134:1981..3376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52134.12503.1 ID=mRNA_H-elongata_contig52134.12503.1|Name=mRNA_H-elongata_contig52134.12503.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1396bp|location=Sequence derived from alignment at H-elongata_contig52134:1981..3376+ (Himanthalia elongata Himel1 dioecious)
GTCTGGGACAGCTTCGGTCGTCAATTGTACCAGAGTGGGGGCCTGGGTTA
CGCGATCACGTCGGTGAAGTGGTGTCCCAATGGTGAGAGCTTCGCAGTCG
GAGCGTTCAACACCCTCCGGCTGTGCGATAAAACAGGTTGGAGCCACTCC
AGGAACAGGTGAGGCGGCCCATTTCTCCTGCCTCTTTAGATATTTATATA
TATATATAACTAATGAAAACAGTTTTCATACTGACTTCAGCTTCCACACT
GACTTAACTGTCTGCTTCCGATCGGTTGTCCATTGTCTGCTTCCGTCAGC
AAGGTCCACACTCAATTCGCATTTGAATGACAACTGCTGGTGAACTGATA
TACAGACCAGAGTCAAAATTGTCCTCCAATACAGTAGTTAAGCATAATAA
TGCAAACTATACCCGAATGCAGGCCTCAAAGCGGCAGCATCACAAGCCTA
ACGTGGACACTGGACGGCACGCAGCTCGCTGCAGCCGGGGCAAACGGGGA
TGTTGTGGTCGGACAGGTTATTGAACGTTTCCTTGAGTGGGGAAACTTTG
AGGTAAGCAAAAATGAATGAACATCGCTGATGAAGTTAAACATATCCGAA
AATCTCGACGTGGCGTGCTGTGCACCACTGCGTTCATAGCAACACGCCTA
CCCAAGGTAATCGGCGGCAACATATATTACCATGCAGTTGGGTTTAGCAT
TATGTCCTCCCGTGCTGCAATGTGAGCTACCACAGAATGCCACGCTACCC
CGGAAGTAAATAACACGCTACCCTTGTATGTACTAAATCTACAACTATAA
ATATAAACCCTTCGTAGCAAGGTTTTCATCAATGGGCAATCATCGTTAAG
ACATCGTTCAACGGATCTTGGAGGTTCGAGAATGGCGAAGTTGCCCTTCG
GAGCCGAATATATCCGTCTGAAGTTTTTATGAACAACCAAGCTTATGATT
ATTCGTGTTCACCGTTTCTTCGGATGGTCCTGTGAGTAGGCCATCTTGGT
AAACCCCGGGAAAATCAGGGTAAGCGATGTGAGCAGCGAGATGGTCGAAG
ATCTGGAATTTCTGGGCGGACGAGTCATCGAGATGTCGCTTGCTTTCGGG
CATCTTGTGGCGGCTACGCAGAACCAAGTACGGCAGCAGCGGTGTTCGCT
TTTTCGTCGCAAACACCATCCGTTCGGCCCCCCGTAGTCACCAGACTTGG
CGTGTGTATTGTGCGTTGAGCTAAACGATGAAATGTTTACGTGTATTTCT
TCCTCGCTGATGGGAGGTAGGTATTCATCTACTCCGTGTTCAACTGGAAC
ACCCCACATATCCTTGACATGAGAAGTGGAGCCTCGCTCATCGTACAAGC
GGAGACTCATTTCTTGACGCTCGACATTTCGCAGGGAGTTCAGGTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig52134:1981..3376+

>mRNA_H-elongata_contig52134.12503.1 ID=mRNA_H-elongata_contig52134.12503.1|Name=mRNA_H-elongata_contig52134.12503.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at H-elongata_contig52134:1981..3376+ (Himanthalia elongata Himel1 dioecious)
GTCTGGGACAGCTTCGGTCGTCAATTGTACCAGAGTGGGGGCCTGGGTTA
CGCGATCACGTCGGTGAAGTGGTGTCCCAATGGTGAGAGCTTCGCAGTCG
GAGCGTTCAACACCCTCCGGCTGTGCGATAAAACAGGTTGGAGCCACTCC
AGGAACAGGTCTGGGACAGCTTCGGTCGTCAATTGTACCAGAGTGGGGGC
CTGGGTTACGCGATCACGTCGGTGAAGTGGTGTCCCAATGGTGAGAGCTT
CGCAGTCGGAGCGTTCAACACCCTCCGGCTGTGCGATAAAACAGGTTGGA
GCCACTCCAGGAACAGGCCTCAAAGCGGCAGCATCACAAGCCTAACGTGG
ACACTGGACGGCACGCAGCTCGCTGCAGCCGGGGCAAACGGGGATGTTGT
GGTCGGACAGGTTATTGAACGTTTCCTTGAGTGGGGAAACTTTGAGGCCT
CAAAGCGGCAGCATCACAAGCCTAACGTGGACACTGGACGGCACGCAGCT
CGCTGCAGCCGGGGCAAACGGGGATGTTGTGGTCGGACAGGTTATTGAAC
GTTTCCTTGAGTGGGGAAACTTTGAGGCCATCTTGGTAAACCCCGGGAAA
ATCAGGGTAAGCGATGTGAGCAGCGAGATGGTCGAAGATCTGGAATTTCT
GGGCGGACGAGTCATCGAGATGTCGCTTGCTTTCGGGCATCTTGTGGCGG
CTACGCAGAACCAAGCCATCTTGGTAAACCCCGGGAAAATCAGGGTAAGC
GATGTGAGCAGCGAGATGGTCGAAGATCTGGAATTTCTGGGCGGACGAGT
CATCGAGATGTCGCTTGCTTTCGGGCATCTTGTGGCGGCTACGCAGAACC
AAGTATTCATCTACTCCGTGTTCAACTGGAACACCCCACATATCCTTGAC
ATGAGAAGTGGAGCCTCGCTCATCGTACAAGCGGAGACTCATTTCTTGAC
GCTCGACATTTCGCAGGGAGTTCAGGTCGTATTCATCTACTCCGTGTTCA
ACTGGAACACCCCACATATCCTTGACATGAGAAGTGGAGCCTCGCTCATC
GTACAAGCGGAGACTCATTTCTTGACGCTCGACATTTCGCAGGGAGTTCA
GGTC
back to top