mRNA_H-elongata_contig52057.12492.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52057.12492.1
Unique NamemRNA_H-elongata_contig52057.12492.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52057.12492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52057contigH-elongata_contig52057:2927..3696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930851.2747135-CDS-H-elongata_contig52057:2926..30041622930851.2747135-CDS-H-elongata_contig52057:2926..3004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52057 2927..3004 -
1691679597.5522168-CDS-H-elongata_contig52057:2926..30041691679597.5522168-CDS-H-elongata_contig52057:2926..3004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52057 2927..3004 -
1622930851.2902615-CDS-H-elongata_contig52057:3615..36961622930851.2902615-CDS-H-elongata_contig52057:3615..3696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52057 3616..3696 -
1691679597.5625815-CDS-H-elongata_contig52057:3615..36961691679597.5625815-CDS-H-elongata_contig52057:3615..3696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52057 3616..3696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52057.12492.1prot_H-elongata_contig52057.12492.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52057 2927..3696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52057.12492.1

>prot_H-elongata_contig52057.12492.1 ID=prot_H-elongata_contig52057.12492.1|Name=mRNA_H-elongata_contig52057.12492.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MEKILFRGFLGRKNKEESTIASAAINKICCLCDAQAAGIVTERKAAAVPV
LY*
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mRNA from alignment at H-elongata_contig52057:2927..3696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52057.12492.1 ID=mRNA_H-elongata_contig52057.12492.1|Name=mRNA_H-elongata_contig52057.12492.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=770bp|location=Sequence derived from alignment at H-elongata_contig52057:2927..3696- (Himanthalia elongata Himel1 dioecious)
ATGGAAAAAATCTTGTTCAGAGGCTTCCTGGGAAGGAAAAACAAAGAAGA
AAGTACAATTGCGAGCGCGGCAATTAACAAGGTGAAACCTTTCAGGGGTT
TAAGATGCTGAAACCACGCCCCTAGAAGTTGTGGCGATTACCCTCTAACT
TGACAATGACGTATGCGATTTCAATTTTGTTTTCTTCTCGTTGACCACAA
CCTTATGTCGGTTATATATGTTCCGCCATGAAAGTTCTCAATCGGTAATC
TTCGGTTCCAAAATTACCCAAACATACTCACTCTTTTTTGTTAAATCTGA
GTCCTCGCATCACCAATATACTGTTTTCATGGTGCTAAGAAGGCGTGGAT
GTTCGAAGGGTTCTAATGAGTTCATATATTTTAAAATAAAAATACCAAGC
GCTTGGAGCGATCCCACGAGGACTGCCCTTGCGATCCATAGTGCTGGACT
CCCAAGAGATAAAATGTGTATCTCACGCTTTAACTCGCGGGCGGCATACT
GGTTGATCGCGGGCGCCTGGCGTTTTTTGGGTGCGTTTTGCCGAACGCGA
CGTTTGTTTCGTCTTAGGCGCAAAATACACGCGGGGGCCAGCGATTAAAG
TACCGCACAAGAAGGCTCAAGTGACTACTACAAAGCAAACGTACTTCTAC
CGCAAGAACAATACGGGTTCCATTAACATCGTTCGATTACAGATATGCTG
TTTGTGTGATGCACAGGCTGCGGGGATTGTGACGGAAAGGAAGGCTGCCG
CTGTCCCTGTGCTTTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig52057:2927..3696-

>mRNA_H-elongata_contig52057.12492.1 ID=mRNA_H-elongata_contig52057.12492.1|Name=mRNA_H-elongata_contig52057.12492.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig52057:2927..3696- (Himanthalia elongata Himel1 dioecious)
ATGGAAAAAATCTTGTTCAGAGGCTTCCTGGGAAGGAAAAACAAAGAAGA
AAGTACAATTGCGAGCGCGGCAATTAACAAGATGGAAAAAATCTTGTTCA
GAGGCTTCCTGGGAAGGAAAAACAAAGAAGAAAGTACAATTGCGAGCGCG
GCAATTAACAAGATATGCTGTTTGTGTGATGCACAGGCTGCGGGGATTGT
GACGGAAAGGAAGGCTGCCGCTGTCCCTGTGCTTTATTAAATATGCTGTT
TGTGTGATGCACAGGCTGCGGGGATTGTGACGGAAAGGAAGGCTGCCGCT
GTCCCTGTGCTTTATTAA
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