mRNA_H-elongata_contig5203.12486.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5203.12486.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 117 bits (293), Expect = 5.290e-25 Identity = 87/237 (36.71%), Postives = 117/237 (49.37%), Query Frame = 1
Query: 400 GTTYFASNNAVFNGGAIGGSATADTFYG--DSRLIANGSMTLMNNTCGGNGGAIDLTG-ISFVIHGN--VSFLGNSALSFGGALYASRVNIGLKLYNVKFSGNIAEAGGGSFFSEAGAFQSGSTTD-SYYKEYYASEFINCIFEGXXXXXXXXXXXXXXXTYFVQGTIFTRNSAELGGAIRSSGTISLLNSSFIENMSEEGGGPAISNGGVISEMLGLQFSGNGYQCSPDAFMGFNK 1092
G T F SN A F+GGAI S D+ Y +S L NG+ T NN CGGNGG + L G + VI +SF+ N+A GGA++ S GL F N A+ GG F SG + + + F C F G F T F N+A GGA+R +GT S++N SF+EN S +GGG A+SN G++S + FSGNG+ C F+ +N+
Sbjct: 685 GVTNFTSNQAFFDGGAIV-SPQLDSEYNPSESTLNFNGTTTFFNNRCGGNGGGMALYGGCALVIDTEMGISFIENTAAVSGGAVFVSSAGTGLAFPTTSFVSNSAQIGGA-----VATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNE 915
BLAST of mRNA_H-elongata_contig5203.12486.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 108 bits (271), Expect = 3.500e-22 Identity = 77/217 (35.48%), Postives = 108/217 (49.77%), Query Frame = 1
Query: 454 GSATADTFYG--DSRLIANGSMTLMNNTCGGNGGAIDLTG-ISFVIH-GNVSFLGNSALSFGGALYASRVNIGLKLYNVKFSGNIAEAGGGSFFSEAGAFQSGSTTDSYYKEYYASEFINCIFEGXXXXXXXXXXXXXXXTYFVQGTIFTRNSAELGGAIRSSGTISLLNSSFIENMSEEGGGPAISNGGVISEMLGLQFSGNGYQCSPDAFMGFNK 1092
GS +D+ DS L +G +NNT G NGGA+ L G +S ++ G SF+ NSA GGA+Y S IG +V F N A+ GG + SG+ + + F C F + T+F N A GGA+R +G SL+N SF+EN+S++G G A+SN GVISE+ FSGN + C+PD F+ +
Sbjct: 304 GSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGA-----VSSLGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNYTS 515
BLAST of mRNA_H-elongata_contig5203.12486.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 107 bits (268), Expect = 7.950e-22 Identity = 83/243 (34.16%), Postives = 113/243 (46.50%), Query Frame = 1
Query: 370 LYNDVVVRNEGTTYFASNNAVFNGGAIGGSATADTFYG--DSRLIANGSMTLMNNTCGGNGGAIDLTG-ISFVIHGNVS-FLGNSALSFGGALYASRVNIGLKLYNVKFSGNIAEAGGGSFFSEAGAFQSGSTTDSYYKEYYASEFINCIFEGXXXXXXXXXXXXXXXTYFVQGTIFTRNSAELGGAIRSSGTISLLNSSFIENMSEEGGGPAISNGGVISEMLGLQFSGNGYQCSPDAFMGF 1086
L N V + G T N A+ +GGA+G S +D+ DS L +G +NNT G NGGA+ L G +S ++ S F+ NSA GG +Y S IG +V F N A GG + F C F + T+F N A GGA+R +G SL N SF+EN+S+EG G A+SN G+ISE+ FSGN + C+PD F+ +
Sbjct: 287 LLNGSYVSSTGDTKVVRNGALVDGGAVG-SVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGELSISVNTEESSFVDNSADLAGGTVYVSDTAIGPTFSDVIFDSNFAHVGGALL---------------------PTTFSRCRFTYNRETATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNY 507
BLAST of mRNA_H-elongata_contig5203.12486.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 106 bits (264), Expect = 3.420e-21 Identity = 77/215 (35.81%), Postives = 107/215 (49.77%), Query Frame = 1
Query: 454 GSATADTFYG--DSRLIANGSMTLMNNTCGGNGGAIDLTG-ISFVIHGN-VSFLGNSALSFGGALYASRVNIGLKLYNVKFSGNIAEAGGGSFFSEAGAFQSGSTTDSYYKEYYASEFINCIFEGXXXXXXXXXXXXXXXTYFVQGTIFTRNSAELGGAIRSSGTISLLNSSFIENMSEEGGGPAISNGGVISEMLGLQFSGNGYQCSPDAFMGF 1086
GS +D+ DS L +G +NNT G NGGA+ L G +S ++ +F+ NSA GGA+Y S IG +V F N A+ GG A SG+ + + F C F + T+F N A GGA+R +G SL+N SF+EN+S+EG G A+SN GVISE+ FSGN + C+PD F+ +
Sbjct: 2217 GSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGA-----VSALGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGNVFNCAPDTFLNY 2426
BLAST of mRNA_H-elongata_contig5203.12486.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 8.890e-18 Identity = 75/220 (34.09%), Postives = 105/220 (47.73%), Query Frame = 1
Query: 439 GGAIGGSATADTFYGDSRLIANGSMTLMNNTCGGNGGAIDLTGISFVIHG--NVSFLGNSALSFGGALYASRVNIGLKLYNVKFSGNIAEAGGGSFFSEAGAFQSGSTTDSYYKEYYASEFINCIF-EGXXXXXXXXXXXXXXXTYFVQGTIFTRNSAELGGAIRSSGTISLLNSSFIENMSEEGGGPAISNGGVISEMLGLQFSGNGYQCSPDAFMGFN 1089
GG IG +T S L+ NG+ +NNTCG NGGA+ L G V G NVSF+GN+A GGA++ S G +F N A+ GG S G+ D + F +C F + FV T F N A GG +R +GT SL SF++N+S++ GG A+SN G + + + FSGN + C P ++ +N
Sbjct: 537 GGVIGSFSTDSVSNQGSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGA--VSTVGSGNLKENADISPPN--PTTFDHCHFIDNRATATGGAIDSAAGQDAFVNST-FQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYN 751
BLAST of mRNA_H-elongata_contig5203.12486.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 1.920e-12 Identity = 64/204 (31.37%), Postives = 93/204 (45.59%), Query Frame = 1
Query: 487 SRLIANGSMTLMNNTCGGNGGAID-LTGISFVIH-GNVSFLGNSALSFGGALYASRVNIGLKLYNVKFSGNIAEAGGGSFFSEAGAFQSGSTTDSYYKEYYA-SEFINCIFEGXXXXXXXXXXXXXXXTYFVQGTIFTRNSAELGGAIRSSGTISLLNSSFIENMSEEGGGPAISNGGVISEMLGLQFSGNGYQCSPDAFMGFN 1089
S L+ NG +NNTCGG+GG + G+S I V+F GN+A GGA++ S +G F SG+ + E+ + + F C F G G +F N A GGA+R +GT S+ N SF++N+S++G G A+SN G IS+M + FS N + C F+ N
Sbjct: 523 STLLINGPTAFVNNTCGGSGGGLAAFDGLSVDIDTAGVTFSGNAAEVAGGAVFVSGAGVGFV-----FXXXXXXXXXXXXXXAVSIVGSGNLKGFFDLEWPSPTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLN 721
BLAST of mRNA_H-elongata_contig5203.12486.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 3.330e-10 Identity = 52/167 (31.14%), Postives = 76/167 (45.51%), Query Frame = 1
Query: 589 NVSFLGNSALSFGGALYASRVNIGLKLYNVKFSGNIAEAGGGSFFSEAGAFQSGSTTDSYYKEYYA---SEFINCIFEGXXXXXXXXXXXXXXXTYFVQGTIFTRNSAELGGAIRSSGTISLLNSSFIENMSEEGGGPAISNGGVISEMLGLQFSGNGYQCSPDAFM 1080
N F+GN+A GGA++ S +G N+ N A+ GG +G S+ E Y + F C F ++F N+A GGA+R +GT + N SF+EN+S++GGG A+SN G +S + L FS N Y C F+
Sbjct: 310 NTVFVGNTAAVAGGAIFVSGTAVGPTFVNISLVSNSAQVGGAISLIGSGT--------SFNPEDYTPAPTTFEQCRFTSNRAIATGGAVDTAAGQDKFVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFL 468
BLAST of mRNA_H-elongata_contig5203.12486.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 1.600e-9 Identity = 55/173 (31.79%), Postives = 79/173 (45.66%), Query Frame = 1
Query: 592 VSFLGNSALSFGGALYASRVNIGLKLYNVKFSGNIAEAGGGSFFSEAGAFQSGSTTDSYYKEYYA-------SEFINCIFEGXXXXXXXXXXXXXXXTYFVQGTIFTRNSAELGGAIRSSGTISLLNSSFIENMSEEGGGPAISNGGVISEMLGLQFSGNGYQCSPDAFMGFN 1089
V F N+A GGA++ S ++G L +V F N+A+ GG ST S + YA + F C F +F GGA+R +GT +L N SF+EN+SE+GGG A+SN G IS+M + + GN + C+ F+ FN
Sbjct: 1399 VVFSNNTAAVAGGAVFVSGADVGPVLSDVLFEANVAQVGGAV-----------STVGSGNLKEYAGLAPPNPTIFTRCRFVNNQAAATGGAVETAAGQDVFVDCLFXXXXXGTGGALRLAGTATLENCSFVENVSEDGGGAAVSNIGSISKMDNISYRGNVFSCALGMFLDFN 1560 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5203.12486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5203.12486.1 >prot_H-elongata_contig5203.12486.1 ID=prot_H-elongata_contig5203.12486.1|Name=mRNA_H-elongata_contig5203.12486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=363bp MTISNGAGIVGGAIISAEDSELTAKSVAFSSNTAQVVGGAIYAVSSKVELback to top mRNA from alignment at H-elongata_contig5203:304..1809- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5203.12486.1 ID=mRNA_H-elongata_contig5203.12486.1|Name=mRNA_H-elongata_contig5203.12486.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1506bp|location=Sequence derived from alignment at H-elongata_contig5203:304..1809- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5203:304..1809- >mRNA_H-elongata_contig5203.12486.1 ID=mRNA_H-elongata_contig5203.12486.1|Name=mRNA_H-elongata_contig5203.12486.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2178bp|location=Sequence derived from alignment at H-elongata_contig5203:304..1809- (Himanthalia elongata Himel1 dioecious)back to top |