mRNA_H-elongata_contig5201.12485.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5201.12485.1 vs. uniprot
Match: D7FQR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR2_ECTSI) HSP 1 Score: 293 bits (751), Expect = 2.540e-93 Identity = 155/228 (67.98%), Postives = 186/228 (81.58%), Query Frame = 1
Query: 1 IPGGKEALERQRRLERVGAIKLQRAFRRYLNIQWRLAEATRQRTTFLLRYRSAQVIQAMLRGRLGRRVLETEKLILVIRKANRLLVQHAMNHYPDRKKVFWYNNRAEEEQLYNDYRILVQRTGFRPPRMVVEQNIREIAQRILEREAELASRIQARWRGLSVRRYLIVLRREIRWRREVRASMVLRIQRFARGWSHRRLAVRCRSQRAARKLMEKYICQKEARGIEDA 684
I GGKEAL R+RRLER+ A LQRAFRR+L+IQWR +E RQRT LLRYRSAQVIQAMLRGRLGRRV ETEK + V++KA+RLL++HA++HYP RK+VFWY N AEE QLY DYR+LV RTGFRPPR+VVEQNIREIA R+LEREAEL RIQARWRGLSVRRYL+V RRE+R REVRASMV R+QR RGWSHR+ + +SQ+A + ++ Y+ + + +DA
Sbjct: 184 IQGGKEALARRRRLERIAAKMLQRAFRRHLHIQWRKSEIVRQRTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRIVVEQNIREIATRVLEREAELVGRIQARWRGLSVRRYLVVFRRELRRHREVRASMVFRLQRTVRGWSHRKRFSKLKSQKAEQNILGDYLATRATKNNDDA 411
BLAST of mRNA_H-elongata_contig5201.12485.1 vs. uniprot
Match: A0A836CFY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY4_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.720e-37 Identity = 88/191 (46.07%), Postives = 128/191 (67.02%), Query Frame = 1
Query: 31 QRRLERVGAIKL-QRAFRRYLNIQWRLAEATRQRTTFLLRYRSAQVIQAMLRGRLGRRVLETEKLILVIRKANRLLVQHAMNHYPDRKKVFWYNNRAEEEQLYNDYRILVQRTGFRPPRMVVEQNIREIAQRILEREAELASRIQARWRGLSVRRYLIVLRREIRWRREVRASMVLRIQRFARGWSHRRLA 600
QR R GA + QRA+R YL ++ A R T LL YR A+ +QA++RGRLGRRV T++ + V+ + ++ A++ P+R+++FWY+ +AE++ L+ DY LV+RTGFRPPR +VE NI E+A R LER + LA+R+Q RWRG++ R + V RE R RE+R ++V RIQR RGW+ R+ A
Sbjct: 236 QRAARRRGAAAVVQRAYRSYLAVRRDRALRVRLLTKHLLEYRCARAVQAVMRGRLGRRVARTQRHLRVLAGCHPAVLHWALHGCPERRRLFWYHIKAEQDLLFADYVALVERTGFRPPRGLVEANIAELAARALERVSALATRVQRRWRGVAARLRMAVYLRERRRLRELRNAVVFRIQRTYRGWAGRKAA 426
BLAST of mRNA_H-elongata_contig5201.12485.1 vs. uniprot
Match: A0A7S2R5D9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5D9_9STRA) HSP 1 Score: 144 bits (364), Expect = 2.380e-36 Identity = 83/198 (41.92%), Postives = 130/198 (65.66%), Query Frame = 1
Query: 1 IPGGKEALERQRRLERVGAIKLQRAFRRYLNIQWRLAEATRQRTTFLLRYRSAQVIQAMLRGRLGRRVLETEKLILVIRKANRLLVQHAMNHYPDRKKVFWYNNRAEEEQLYNDYRILVQRTGFRPPRMVVEQNIREIAQRILEREAELASRIQARWRGLSVRRYLIVLRREIRWRREVRASMVLRIQRFARGWSHRR 594
I +E LE R ++ + +QR++R YL QW AE R++ +L YR+A +I+A++RGRLGRR +T I +I +A+ LV A++ +++VFWY + + LY DY +L +RTGF+PPR+VVE+N++EIA+RI REA L + +Q RWRG++VRR+++V RE+ RE++ + +IQR G+ RR
Sbjct: 203 IGASREELEALLRRQKKAVVVIQRSYRFYLRRQWGRAERQRKKIRAMLEYRAASIIEALIRGRLGRRKAKTTVSIRIIMRAHSKLVSRAVSDRSYKRRVFWYKP-DQLKILYLDYVVLCERTGFQPPRVVVEENLKEIARRIRIREAFLTTLVQKRWRGITVRRFMVVYMREVFRIRELQCAAAFKIQRLVHGFRGRR 399
BLAST of mRNA_H-elongata_contig5201.12485.1 vs. uniprot
Match: A0A8J2X0I4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0I4_9STRA) HSP 1 Score: 116 bits (290), Expect = 3.440e-26 Identity = 85/225 (37.78%), Postives = 126/225 (56.00%), Query Frame = 1
Query: 7 GGKEALERQRRLERVGAIKLQRAFRRYLNIQWRLAEATRQRTTFLLRYRSAQVIQAMLRGRLGRRVLETEKLILVIRKANRLLVQHAM----------NHYPDRKKVFWYNNRAEEEQLYNDYRILVQRTGFRPPRMVVEQNIREIAQRILEREAELASRIQARWRGLSVRRYLIVLRREIRWRREVRASMVLRIQRFARGWSHRRLAVRCR-SQRAARKLMEKY 648
G +EA+ ++ + + A L +R YL Q A TRQ+ + L +R A ++++ RGRLGRR T + + I+ + + ++ A+ KKVFWY+ + + + LY DY IL QRTGF PPR++VEQNI EIA+RI RE L + IQA +RG+ +R+ L + + EI RE+RA RI RG+ R+L V R +Q RK E+Y
Sbjct: 160 GAREAMAKEMKKRKRAASLLIMVYRFYLRRQLARAARTRQKCRYYLYHRCASIVESAARGRLGRRRARTFENLRYIKNRHPISLKKALAQKFEVDKRTGESKRLKKVFWYHTKVQLDCLYRDYFILCQRTGFVPPRIIVEQNIEEIARRIRVREEYLITLIQALYRGIILRKCLEIYKYEIIRIREIRAQSCFRIGTIWRGYVARKLRVPARIAQVLRRKRPEQY 384
BLAST of mRNA_H-elongata_contig5201.12485.1 vs. uniprot
Match: A0A7S1U287_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U287_9STRA) HSP 1 Score: 110 bits (275), Expect = 2.950e-25 Identity = 69/157 (43.95%), Postives = 95/157 (60.51%), Query Frame = 1
Query: 187 RLGRRVLETEKLILVIRKANRLLVQHAMN--------------HYPDRKKVFWYNNRAEEEQLYNDYRILVQRTGFRPPRMVVEQNIREIAQRILEREAELASRIQARWRGLSVRRYLIVLRREIRWRREVRASMVLRIQRFARGWSHRRLAVRCRS 615
RL +R L+ E+ + VI+ A+ +++ A+ P KKVFWY R E + LY DYRILV RTG++PP +VE NI EIA+R A A+R+QARWRGL+VR++L + RRE RE R++ V++IQR RG RR A R R+
Sbjct: 14 RLAQRALQVERDLKVIKGAHAIVLSRALRAKDFPLTAEDKARGEPPPPKKVFWYRTRQEVDLLYADYRILVDRTGYQPPLFMVENNIHEIARRCNILIAAYATRVQARWRGLTVRKFLKIFRRECVRLREFRSACVMKIQRCYRGARARRCATRMRT 170
BLAST of mRNA_H-elongata_contig5201.12485.1 vs. uniprot
Match: A0A7S1U265_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U265_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.130e-24 Identity = 69/157 (43.95%), Postives = 95/157 (60.51%), Query Frame = 1
Query: 187 RLGRRVLETEKLILVIRKANRLLVQHAMN--------------HYPDRKKVFWYNNRAEEEQLYNDYRILVQRTGFRPPRMVVEQNIREIAQRILEREAELASRIQARWRGLSVRRYLIVLRREIRWRREVRASMVLRIQRFARGWSHRRLAVRCRS 615
RL +R L+ E+ + VI+ A+ +++ A+ P KKVFWY R E + LY DYRILV RTG++PP +VE NI EIA+R A A+R+QARWRGL+VR++L + RRE RE R++ V++IQR RG RR A R R+
Sbjct: 14 RLAQRALQVERDLKVIKGAHAIVLSRALRAKDFPLTAEDKARGEPPPPKKVFWYRTRQEVDLLYADYRILVDRTGYQPPLFMVENNIHEIARRCNILIAAYATRVQARWRGLTVRKFLKIFRRECVRLREFRSACVMKIQRCYRGARARRCATRMRT 170
BLAST of mRNA_H-elongata_contig5201.12485.1 vs. uniprot
Match: F0YRG3_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRG3_AURAN) HSP 1 Score: 105 bits (262), Expect = 1.790e-23 Identity = 66/160 (41.25%), Postives = 97/160 (60.62%), Query Frame = 1
Query: 1 IPGGKEALERQRRLERVGAIKLQRAFRRYLNIQWRLAEATRQRTTFLLRYRSAQVIQAMLRGRLGRRVLETEKLILVIRKANRLLVQHAMNHYPDRKKVFWYNNRAEEEQLYNDYRILVQRTGFRPPRMVVEQNIREIAQRILEREAELASRIQARWRGL 480
I G K L +Q ++ A L R++R YL Q A TR++ L+ A +I+A+LRGRLGRR T + ++KA+ + + A++ KVFWY ++ + L+NDY +LV+RTGF PPR VVE NI+EIA+RI RE L + +Q+RWR +
Sbjct: 156 IAGSKAELIKQIKIRHAAAFLLGRSYRFYLRRQCARACRTREKVWAYLQRLCAAIIEAVLRGRLGRRKARTCAYLNYVQKAHPISLSKALS-LGGEFKVFWYKSKEQIRLLFNDYLVLVERTGFVPPRYVVEANIQEIARRIKAREHTLITAVQSRWRAI 314
BLAST of mRNA_H-elongata_contig5201.12485.1 vs. uniprot
Match: K3W6X3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6X3_GLOUD) HSP 1 Score: 95.9 bits (237), Expect = 4.920e-20 Identity = 70/210 (33.33%), Postives = 122/210 (58.10%), Query Frame = 1
Query: 64 LQRAFRRYLN-IQWRLAEATRQRTTFLLRYRSAQVIQAMLRGRLGRRVLETEKLILVIRKANRLLVQHAMNHYPDRKKVFWYNNRAEEEQLYNDYRILVQRTGFRPPRMVVEQNIREIAQRILEREAELASRIQARWRGLSVRRYLIVLRREIRWRREVRASMVLRIQRFARGWSHRRL--AVRCRSQRAARKLMEKYICQKEARGIEDA 684
+QR R +L +++R + R+R + + +A+ IQ +RG RR E+ + VI++ + + +A+ PD+ VFWY+N AE + +YR V+R+G RP + VE N+ E+ +R+L RE L SRIQ++WRGL+ R +R+ W R ++ S ++IQR RG + R+ A++ ++Q A+ M+ Y ++ AR +D+
Sbjct: 33 IQRIARGFLGRLEYRCRKVERERYLRKINHTAAR-IQTYVRGMQARRRTLIERCLRVIKRMHPSIWAYALTARPDQPPVFWYDNTAERNIFFWNYREFVRRSGGRPTLIKVETNVLELTKRMLLREYVLVSRIQSQWRGLTTRLVFREFKRQKGWLRGIQQSPAIKIQRLFRGHTSRKKCSALKVKTQYPAQ--MKMYKRERRARADQDS 239
BLAST of mRNA_H-elongata_contig5201.12485.1 vs. uniprot
Match: A0A7S4VWR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VWR3_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.400e-13 Identity = 36/92 (39.13%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 196 RRVLETEKLILVIRKANRLLVQHAMNHYPDRKKVFWYNNRAEEEQLYNDYRILVQRTGFRPPRMVVEQNIREIAQRILEREAELASRIQARW 471
+R + E + VI+ + +L++ A++ +K+VFWY ++ E + L+ Y +LV+R GF PP VE+NI IA+RI++REAE+ +R+Q+R+
Sbjct: 1 KRRFKVELALRVIKNSRPMLMERALDGKIHKKRVFWYKSKEELDVLFKSYYMLVERMGFHPPLFEVEENIIIIAKRIVDREAEIVTRVQSRY 92 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5201.12485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5201.12485.1 >prot_H-elongata_contig5201.12485.1 ID=prot_H-elongata_contig5201.12485.1|Name=mRNA_H-elongata_contig5201.12485.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp IPGGKEALERQRRLERVGAIKLQRAFRRYLNIQWRLAEATRQRTTFLLRYback to top mRNA from alignment at H-elongata_contig5201:9619..10562- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5201.12485.1 ID=mRNA_H-elongata_contig5201.12485.1|Name=mRNA_H-elongata_contig5201.12485.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=944bp|location=Sequence derived from alignment at H-elongata_contig5201:9619..10562- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5201:9619..10562- >mRNA_H-elongata_contig5201.12485.1 ID=mRNA_H-elongata_contig5201.12485.1|Name=mRNA_H-elongata_contig5201.12485.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig5201:9619..10562- (Himanthalia elongata Himel1 dioecious)back to top |