mRNA_H-elongata_contig51995.12482.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51995.12482.1
Unique NamemRNA_H-elongata_contig51995.12482.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51995.12482.1 vs. uniprot
Match: A0A6H5K075_9PHAE (DUF4470 domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K075_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 7.390e-44
Identity = 88/145 (60.69%), Postives = 103/145 (71.03%), Query Frame = 1 
Query:   67 DAQRADMLLLGCSDARHALFTLWNYASECNRERGRWE---KEGIAAQRERRPEGLLQTLRFTLNDREPACLARVLLLLQLFLSGHDQLVD----------------ACSPSASPDELAAYVEWISLCFSAYYNVYVDQVTQAAVQ 444
            DA+RADMLLLGCSDARHALFTLW Y SEC+RERGRW+    E    Q ++ P+GL +TLRFT+NDREPACLARVLLLLQLF + HD LV                 ACSP+ASP++L AY   I+LCF+AYYN+YVD  T  A Q
Sbjct:    2 DARRADMLLLGCSDARHALFTLWTYGSECSRERGRWDGLTSEERRQQNQQDPDGL-RTLRFTMNDREPACLARVLLLLQLFCNSHDDLVRGWGSERAVMVGRGGLRACSPNASPEQLHAYSAKIALCFNAYYNIYVDNATLQATQ 145
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BLAST of mRNA_H-elongata_contig51995.12482.1 vs. uniprot
Match: D8LNQ8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNQ8_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.120e-7
Identity = 56/180 (31.11%), Postives = 75/180 (41.67%), Query Frame = 1 
Query:   25 GCTPPENLLGSVPKDAQRADMLLLGCSDARHALFTLWNYASECNRERGRWEKEGIAAQRERRPEGLLQTLRFTLNDREPACLARVLLLLQLFLSGHDQL------------------VDACSPSASPDELA---------------------------AYVEWISLCFSAYYNVYVDQVT 429
            G TPP +LL  VP DA+RAD+L LGCSD R  L+++  +            + G++         + + L FTLND EPA  AR L+LLQ+ L     L                  VDA S   S  E A                           A+ + I + FSA YN++VD  T
Sbjct:   30 GNTPPTDLLQHVPHDAERADILSLGCSDLRDLLYSVLLHG-----------RRGVSCG------PVPRQLSFTLNDWEPAIHARNLMLLQMILDSRGLLNAEADGVDAVVRGMDTVAVDAGSGDRSIPEAAGKSVCKKKTGKKKTSDKTATKPSLSGAAFAQRIGVIFSAMYNMFVDADT 192
[Close]
BLAST of mRNA_H-elongata_contig51995.12482.1 vs. uniprot
Match: S8BX88_DACHA (MYND-type zinc finger protein samB n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8BX88_DACHA)

HSP 1 Score: 53.1 bits (126), Expect = 2.840e-5
Identity = 36/97 (37.11%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:   25 GCTPPENLLGSVPKDAQRADMLLLGCSDARHALFTLWNYASECNRERGRWEKEGIAAQRERRPEGLLQTLRFTLNDREPACLARVLLLLQLFLSGHD 315
            G +P  NL+  +P D   AD+LLLGC DAR+ LFTLW  + +        +K+  A++        L+T +FT  D E A +AR +LLL + +   D
Sbjct:   17 GNSPAINLVDHLPPDLD-ADILLLGCGDARNILFTLWTESHDTV------DKDKDASK--------LRTFKFTCCDIEGAVIARNILLLAMIIKNED 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51995.12482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K075_9PHAE7.390e-4460.69DUF4470 domain-containing protein (Fragment) n=2 T... [more]
D8LNQ8_ECTSI1.120e-731.11MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
S8BX88_DACHA2.840e-537.11MYND-type zinc finger protein samB n=1 Tax=Dactyle... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51995contigH-elongata_contig51995:72..779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930850.1901622-CDS-H-elongata_contig51995:71..1941622930850.1901622-CDS-H-elongata_contig51995:71..194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51995 72..194 -
1691679597.0926578-CDS-H-elongata_contig51995:71..1941691679597.0926578-CDS-H-elongata_contig51995:71..194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51995 72..194 -
1622930850.2132297-CDS-H-elongata_contig51995:458..7791622930850.2132297-CDS-H-elongata_contig51995:458..779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51995 459..779 -
1691679597.1038454-CDS-H-elongata_contig51995:458..7791691679597.1038454-CDS-H-elongata_contig51995:458..779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51995 459..779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51995.12482.1prot_H-elongata_contig51995.12482.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51995 72..779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51995.12482.1

>prot_H-elongata_contig51995.12482.1 ID=prot_H-elongata_contig51995.12482.1|Name=mRNA_H-elongata_contig51995.12482.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
GCARIPQSGCTPPENLLGSVPKDAQRADMLLLGCSDARHALFTLWNYASE
CNRERGRWEKEGIAAQRERRPEGLLQTLRFTLNDREPACLARVLLLLQLF
LSGHDQLVDACSPSASPDELAAYVEWISLCFSAYYNVYVDQVTQAAVQ
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mRNA from alignment at H-elongata_contig51995:72..779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51995.12482.1 ID=mRNA_H-elongata_contig51995.12482.1|Name=mRNA_H-elongata_contig51995.12482.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig51995:72..779- (Himanthalia elongata Himel1 dioecious)
GGCTGTGCGCGCATCCCACAATCAGGCTGCACTCCCCCAGAGAATCTCTT
GGGAAGCGTACCAAAGGATGCTCAGCGTGCTGACATGCTTCTTCTCGGCT
GCTCTGATGCGCGCCACGCCCTCTTCACCCTGTGGAATTACGCCTCCGAA
TGCAACCGGGAACGAGGACGCTGGGAAAAGGAGGGGATCGCCGCGCAGCG
CGAGCGTCGTCCCGAAGGCCTTCTGCAGACGCTGCGCTTCACCTTGAACG
ATCGTGAGCCGGCTTGCCTTGCCCGCGTCTTGCTCCTTCTACAGCTTTTC
TTGAGCGGCCACGACCAGCTGGTGGGATGTGGCGGGTGGACGAGCGGATA
CGGGTAGCGGCGGAGCATGTGGGGCGTTTTGGGTCACCGTTCTATTTTTC
CGTGTTCTTCATTCTCTTTAGCACAGAGGGCGTTGTTTGGGTGGCCCCGA
CGAGCCTCCGAATCAGGCAGCGACAATTTTGAGCCTTTAGGTTGCGTCGC
CTATCCTCAACTTGCGCGTGTGTGTGGCTACGATGGGCATGCTTGCGCGC
GGATATTTTTCTTCTTATTTTTGTGTCCTGCGCAGGTCGACGCCTGCTCG
CCGAGTGCTTCTCCAGACGAGCTGGCCGCCTACGTCGAGTGGATCTCCCT
CTGCTTCAGCGCTTACTACAACGTCTACGTCGATCAAGTCACCCAAGCGG
CAGTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig51995:72..779-

>mRNA_H-elongata_contig51995.12482.1 ID=mRNA_H-elongata_contig51995.12482.1|Name=mRNA_H-elongata_contig51995.12482.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig51995:72..779- (Himanthalia elongata Himel1 dioecious)
GGCTGTGCGCGCATCCCACAATCAGGCTGCACTCCCCCAGAGAATCTCTT
GGGAAGCGTACCAAAGGATGCTCAGCGTGCTGACATGCTTCTTCTCGGCT
GCTCTGATGCGCGCCACGCCCTCTTCACCCTGTGGAATTACGCCTCCGAA
TGCAACCGGGAACGAGGACGCTGGGAAAAGGAGGGGATCGCCGCGCAGCG
CGAGCGTCGTCCCGAAGGCCTTCTGCAGACGCTGCGCTTCACCTTGAACG
ATCGTGAGCCGGCTTGCCTTGCCCGCGTCTTGCTCCTTCTACAGCTTTTC
TTGAGCGGCCACGACCAGCTGGGCTGTGCGCGCATCCCACAATCAGGCTG
CACTCCCCCAGAGAATCTCTTGGGAAGCGTACCAAAGGATGCTCAGCGTG
CTGACATGCTTCTTCTCGGCTGCTCTGATGCGCGCCACGCCCTCTTCACC
CTGTGGAATTACGCCTCCGAATGCAACCGGGAACGAGGACGCTGGGAAAA
GGAGGGGATCGCCGCGCAGCGCGAGCGTCGTCCCGAAGGCCTTCTGCAGA
CGCTGCGCTTCACCTTGAACGATCGTGAGCCGGCTTGCCTTGCCCGCGTC
TTGCTCCTTCTACAGCTTTTCTTGAGCGGCCACGACCAGCTGGTCGACGC
CTGCTCGCCGAGTGCTTCTCCAGACGAGCTGGCCGCCTACGTCGAGTGGA
TCTCCCTCTGCTTCAGCGCTTACTACAACGTCTACGTCGATCAAGTCACC
CAAGCGGCAGTCCAGGTCGACGCCTGCTCGCCGAGTGCTTCTCCAGACGA
GCTGGCCGCCTACGTCGAGTGGATCTCCCTCTGCTTCAGCGCTTACTACA
ACGTCTACGTCGATCAAGTCACCCAAGCGGCAGTCCAG
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