mRNA_H-elongata_contig51991.12481.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Match: A0A6H5KVK0_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK0_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.230e-25 Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 538 PEMSEFNKRMSHCRVTVEWGFKEMSSKWALFVSMKPQQKTLLSPVGVHYRVATLLSNFHSSLRGG 732
PEM++FNKRMSHCRVTVEWGFKEM+ KWA FVSMKPQQK LLSPV YRVATLLSN+HS + GG
Sbjct: 98 PEMADFNKRMSHCRVTVEWGFKEMTGKWA-FVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGG 161
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Match: A0A6H5K406_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K406_9PHAE) HSP 1 Score: 108 bits (271), Expect = 6.190e-25 Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 538 PEMSEFNKRMSHCRVTVEWGFKEMSSKWALFVSMKPQQKTLLSPVGVHYRVATLLSNFHSSLRGG 732
PEM++FNKRMSHCRVTVEWGFKEM+ KWA FVSMKPQQK LLSPV YRVATLLSN+HS + GG
Sbjct: 134 PEMADFNKRMSHCRVTVEWGFKEMTGKWA-FVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGG 197
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Match: A0A6H5KY46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY46_9PHAE) HSP 1 Score: 108 bits (271), Expect = 8.430e-25 Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 538 PEMSEFNKRMSHCRVTVEWGFKEMSSKWALFVSMKPQQKTLLSPVGVHYRVATLLSNFHSSLRGG 732
PEM++FNKRMSHCRVTVEWGFKEM+ KWA FVSMKPQQK LLSPV YRVATLLSN+HS + GG
Sbjct: 147 PEMADFNKRMSHCRVTVEWGFKEMTGKWA-FVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGG 210
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Match: D7G3U4_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U4_ECTSI) HSP 1 Score: 108 bits (269), Expect = 8.800e-25 Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 538 PEMSEFNKRMSHCRVTVEWGFKEMSSKWALFVSMKPQQKTLLSPVGVHYRVATLLSNFHSSLRGG 732
PEM++FNKRMSHCRVTVEWGFKEM+ KWA FV+MKPQQK LLSPV HYRVATL SN+HS + GG
Sbjct: 78 PEMADFNKRMSHCRVTVEWGFKEMTGKWA-FVNMKPQQKFLLSPVAKHYRVATLPSNWHSCMNGG 141
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Match: A0A6H5JR24_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR24_9PHAE) HSP 1 Score: 108 bits (271), Expect = 2.250e-24 Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 538 PEMSEFNKRMSHCRVTVEWGFKEMSSKWALFVSMKPQQKTLLSPVGVHYRVATLLSNFHSSLRGG 732
PEM++FNKRMSHCRVTVEWGFKEM+ KWA FVSMKPQQK LLSPV YRVATLLSN+HS + GG
Sbjct: 192 PEMADFNKRMSHCRVTVEWGFKEMTGKWA-FVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGG 255
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Match: A0A6H5KH29_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH29_9PHAE) HSP 1 Score: 110 bits (275), Expect = 5.070e-24 Identity = 58/90 (64.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 493 PWSGYSYKPGSLFTPPEMSEFNKRMSHCRVTVEWGFKEMSSKWALFVSMKPQQKTLLSPVGVHYRVATLLSNFHSSLRGGTTFPSFSTLR 762
P+S SY P PEM++FN+RMSHCRVTVEWGFKEM+SKWA FV MK QQK LLSPVG YRVATLLSN HS L GG + L+
Sbjct: 314 PFSAASYGP----LTPEMADFNQRMSHCRVTVEWGFKEMTSKWA-FVDMKSQQKYLLSPVGKQYRVATLLSNMHSCLNGGNQISQYFNLQ 398
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE) HSP 1 Score: 108 bits (271), Expect = 6.200e-24 Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 538 PEMSEFNKRMSHCRVTVEWGFKEMSSKWALFVSMKPQQKTLLSPVGVHYRVATLLSNFHSSLRGG 732
PEM++FNKRMSHCRVTVEWGFKEM+ KWA FVSMKPQQK LLSPV YRVATLLSN+HS + GG
Sbjct: 247 PEMADFNKRMSHCRVTVEWGFKEMTGKWA-FVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGG 310
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Match: D7FZ44_ECTSI (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ44_ECTSI) HSP 1 Score: 103 bits (256), Expect = 7.590e-24 Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1
Query: 538 PEMSEFNKRMSHCRVTVEWGFKEMSSKWALFVSMKPQQKTLLSPVGVHYRVATLLSNFHSSLRGG 732
PEM+EFNK +SHCRVTVEWGFKEM+ KWA FV+MKPQQK LLSPV HY+VATLLSN+ S + GG
Sbjct: 38 PEMAEFNKPISHCRVTVEWGFKEMTGKWA-FVNMKPQQKFLLSPVAKHYQVATLLSNWRSCMNGG 101
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Match: A0A6H5K0J0_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J0_9PHAE) HSP 1 Score: 105 bits (263), Expect = 2.160e-23 Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 493 PWSGYSYKPGSLFTPPEMSEFNKRMSHCRVTVEWGFKEMSSKWALFVSMKPQQKTLLSPVGVHYRVATLLSNFHSSLRGG 732
P+S S P FTP EM++FNKR SHCRVTVEWGFKEM+ KWA FV+MKPQQK LLSPV YRVATLLSN+HS + GG
Sbjct: 166 PFSASSVGP---FTP-EMADFNKRTSHCRVTVEWGFKEMTGKWA-FVNMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGG 240
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Match: A0A6H5JR44_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR44_9PHAE) HSP 1 Score: 103 bits (258), Expect = 2.490e-23 Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1
Query: 538 PEMSEFNKRMSHCRVTVEWGFKEMSSKWALFVSMKPQQKTLLSPVGVHYRVATLLSNFHSSLRGG 732
PEM++FNKRMSHCRVTVEWGFKEM+ KWA FV+MKP QK LLSPV YRV TLLSN+HS + GG
Sbjct: 107 PEMADFNKRMSHCRVTVEWGFKEMTGKWA-FVNMKPPQKFLLSPVAKQYRVGTLLSNWHSCMNGG 170 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51991.12481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51991.12481.1 >prot_H-elongata_contig51991.12481.1 ID=prot_H-elongata_contig51991.12481.1|Name=mRNA_H-elongata_contig51991.12481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp MHVGWALPANTDVRRTFFRAFFLTMDLVARCKLTPVFCFLFVSRCCCILFback to top mRNA from alignment at H-elongata_contig51991:630..3413+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51991.12481.1 ID=mRNA_H-elongata_contig51991.12481.1|Name=mRNA_H-elongata_contig51991.12481.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2784bp|location=Sequence derived from alignment at H-elongata_contig51991:630..3413+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51991:630..3413+ >mRNA_H-elongata_contig51991.12481.1 ID=mRNA_H-elongata_contig51991.12481.1|Name=mRNA_H-elongata_contig51991.12481.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig51991:630..3413+ (Himanthalia elongata Himel1 dioecious)back to top |