mRNA_H-elongata_contig51907.12473.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51907.12473.1
Unique NamemRNA_H-elongata_contig51907.12473.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Match: A0A836CF07_9STRA (Mercuric reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF07_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.820e-35
Identity = 69/99 (69.70%), Postives = 80/99 (80.81%), Query Frame = 1
Query:    1 QVALIESHLMGGDCLNVGCVPSKALISAARVAHTVRNSEAYGVEVTGHVSV-----MERLRRLRAGISHNDSAERF-TKLGVDVYIGRGEFTSRNTVMV 279
            +VA+IESHLMGGDCLNVGCVPSKALI AA VAHTV N + YG+ + G V V     MER+RRLRAGISH+DSAERF T+LG+DV+IGRG FT  NT+ V
Sbjct:  195 KVAIIESHLMGGDCLNVGCVPSKALIKAATVAHTVNNCQEYGISIEGTVKVDFGKVMERMRRLRAGISHHDSAERFATELGIDVFIGRGTFTGPNTIAV 293          
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Match: A0A7S2UV08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV08_9STRA)

HSP 1 Score: 126 bits (316), Expect = 7.300e-34
Identity = 64/99 (64.65%), Postives = 80/99 (80.81%), Query Frame = 1
Query:    1 QVALIESHLMGGDCLNVGCVPSKALISAARVAHTVRNSEAYGVEVTGHVSV-----MERLRRLRAGISHNDSAERFTK-LGVDVYIGRGEFTSRNTVMV 279
            +VA++E+HL+GGDCLNVGCVPSKALI  A VAH V+ +  YGV VTG V V     MER+R+LRAGISH+DSAER++K LG+DV++G G+FTS NTV V
Sbjct:    5 KVAIVENHLLGGDCLNVGCVPSKALIKCAEVAHQVKTAAEYGVNVTGTVEVDFGKVMERMRKLRAGISHHDSAERYSKQLGIDVFMGWGKFTSPNTVEV 103          
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Match: A0A3B1DKA9_9ZZZZ (Mercuric ion reductase (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DKA9_9ZZZZ)

HSP 1 Score: 123 bits (308), Expect = 1.020e-33
Identity = 62/98 (63.27%), Postives = 80/98 (81.63%), Query Frame = 1
Query:    1 QVALIESHLMGGDCLNVGCVPSKALISAARVAHTVRNSEAYGVEVTGHVSV-----MERLRRLRAGISHNDSAERFTKLGVDVYIGRGEFTSRNTVMV 279
            +VALIE +LMGGDCLNVGCVPSKALISAAR   T+R+S+A+G+E+ G+V+V     MER+R+LR+GIS +DSA+RF +LGVDV+IG G F    TV+V
Sbjct:   59 KVALIERNLMGGDCLNVGCVPSKALISAARKFATIRDSDAFGIEIDGNVNVNFPAVMERMRKLRSGISRHDSAKRFQELGVDVFIGDGRFEDNRTVVV 156          
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Match: A0A7S3ZB25_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZB25_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 7.870e-32
Identity = 61/98 (62.24%), Postives = 83/98 (84.69%), Query Frame = 1
Query:    1 QVALIESHLMGGDCLNVGCVPSKALISAARVAHTVRNSEAYGVEVTGHV-----SVMERLRRLRAGISHNDSAERFTKLGVDVYIGRGEFTSRNTVMV 279
            +VALIE++L+GGDCLNVGCVPSKA++ +A++AH ++ ++ YG+ ++G       +VMERLRRLRAGI+H+DSAERFT LGVDV++G G+FTSRNTV V
Sbjct:  224 KVALIEANLLGGDCLNVGCVPSKAILKSAKIAHQIKKAKEYGI-LSGDAKVDFGAVMERLRRLRAGIAHHDSAERFTSLGVDVFLGHGKFTSRNTVEV 320          
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Match: A0A0G4FLL1_VITBC (DEP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FLL1_VITBC)

HSP 1 Score: 126 bits (316), Expect = 1.050e-31
Identity = 69/101 (68.32%), Postives = 78/101 (77.23%), Query Frame = 1
Query:    1 QVALIESHLMGGDCLNVGCVPSKALISAARVAHTVRNS--EAYGVEVTGHV-----SVMERLRRLRAGISHNDSAERFTK-LGVDVYIGRGEFTSRNTVMV 279
            +VALIE HLMGGDCLNVGCVPSKALI AA VAH  R +  + YGV + G V      VM+R+RRLRA ISH+DSAERFTK LGVDVYIG+G FTS NT+ V
Sbjct:  214 KVALIEDHLMGGDCLNVGCVPSKALIKAATVAHHAREAYTKEYGVHIDGSVRVDLGEVMQRMRRLRASISHHDSAERFTKDLGVDVYIGKGVFTSPNTITV 314          
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Match: A0A5B1CI47_9BACT (Mercuric reductase n=1 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CI47_9BACT)

HSP 1 Score: 125 bits (313), Expect = 1.190e-31
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 1
Query:    1 QVALIESHLMGGDCLNVGCVPSKALISAARVAHTVRNSEAYGVEVTGHV----SVMERLRRLRAGISHNDSAERFTKLGVDVYIGRGEFTSRNTVMV 279
            +VALIE +LMGGDCLNVGCVPSKA+ISAARVA +V+N + +GV V G       VMER+R LRAGISH+DSA+RF +LGVDV+IG G FTS  TV V
Sbjct:   65 KVALIERNLMGGDCLNVGCVPSKAIISAARVAASVKNGDTFGVNVDGFQVDFGKVMERMRSLRAGISHHDSAKRFQELGVDVFIGSGNFTSSGTVEV 161          
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Match: A0A3E0Q0P1_9BACT (Mercuric reductase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q0P1_9BACT)

HSP 1 Score: 124 bits (312), Expect = 1.590e-31
Identity = 66/98 (67.35%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 QVALIESHLMGGDCLNVGCVPSKALISAARVAHTVRNSEAYGVEVTGHVSV-----MERLRRLRAGISHNDSAERFTKLGVDVYIGRGEFTSRNTVMV 279
            +VALIE HLMGGDCLNVGCVPSK L+SAAR A  VRN+  +GV V G V V     MER+RRLRAGISH+DSA RF  LGVDVY+G G FT   TV V
Sbjct:   62 RVALIEKHLMGGDCLNVGCVPSKGLLSAARAAAAVRNAANFGVTVDGDVRVDFPAAMERMRRLRAGISHHDSAARFRDLGVDVYLGEGRFTDGATVEV 159          
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Match: A0A532C3Q2_9BACT (FAD-binding protein (Fragment) n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532C3Q2_9BACT)

HSP 1 Score: 119 bits (297), Expect = 1.590e-31
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 QVALIESHLMGGDCLNVGCVPSKALISAARVAHTVRNSEAYGVEVTGHV-----SVMERLRRLRAGISHNDSAERFTKLGVDVYIGRGEFTSRNTVMV 279
            +VALIE HLMGGDCLNVGCVPSK +I AAR    +RN+E +G+ +   V     +VM R+R+LRA ISHNDSA R+TKLGVDVYIG G FT  +T+ V
Sbjct:   61 KVALIEKHLMGGDCLNVGCVPSKGIIRAARAWADLRNAEEFGLHIPPGVKYDFGAVMARMRKLRAQISHNDSAHRYTKLGVDVYIGSGRFTGADTIQV 158          
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Match: A0A534ZG28_9DELT (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534ZG28_9DELT)

HSP 1 Score: 122 bits (306), Expect = 2.070e-31
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    1 QVALIESHLMGGDCLNVGCVPSKALISAARVAHTVRNSEAYGVEVTG----HVSVMERLRRLRAGISHNDSAERFTKLGVDVYIGRGEFTSRNTV 273
            +VAL+E HL+GGDCLNVGCVPSKA+I+AAR A T R + A+GV V+G      +VMER+RRLRAGI+ +D AERFT+LGVDV++G G FT R T+
Sbjct:  125 RVALVERHLLGGDCLNVGCVPSKAMIAAARTAATARETSAFGVGVSGVDVDFAAVMERMRRLRAGIAPHDGAERFTRLGVDVFLGEGRFTGRATL 219          
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Match: A0A388LFS9_CHABU (DEP domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LFS9_CHABU)

HSP 1 Score: 125 bits (313), Expect = 3.140e-31
Identity = 69/99 (69.70%), Postives = 79/99 (79.80%), Query Frame = 1
Query:    1 QVALIESHLMGGDCLNVGCVPSKALISAARVAHTVRNSEAYGVEVTGHVSV-----MERLRRLRAGISHNDSAERFTK-LGVDVYIGRGEFTSRNTVMV 279
            +VAL+E +L+GGDCLNVGCVPSKALI +A+VA TVRN  AYGV+V G VSV     MERLRRLRA IS NDSA+RFT+ LGVDVY GRGEF S  T+ V
Sbjct:  359 KVALVEMNLLGGDCLNVGCVPSKALIKSAKVAATVRNPTAYGVDVKGEVSVDFPKVMERLRRLRAEISVNDSAKRFTEDLGVDVYFGRGEFKSPTTLEV 457          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51907.12473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CF07_9STRA4.820e-3569.70Mercuric reductase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2UV08_9STRA7.300e-3464.65Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3B1DKA9_9ZZZZ1.020e-3363.27Mercuric ion reductase (Fragment) n=1 Tax=hydrothe... [more]
A0A7S3ZB25_9EUKA7.870e-3262.24Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A0G4FLL1_VITBC1.050e-3168.32DEP domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A5B1CI47_9BACT1.190e-3167.01Mercuric reductase n=1 Tax=Rubripirellula obstinat... [more]
A0A3E0Q0P1_9BACT1.590e-3167.35Mercuric reductase n=1 Tax=Planctomycetes bacteriu... [more]
A0A532C3Q2_9BACT1.590e-3161.22FAD-binding protein (Fragment) n=1 Tax=Nitrospira ... [more]
A0A534ZG28_9DELT2.070e-3163.16Pyr_redox_2 domain-containing protein (Fragment) n... [more]
A0A388LFS9_CHABU3.140e-3169.70DEP domain-containing protein n=1 Tax=Chara brauni... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51907contigH-elongata_contig51907:1543..2383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score109.4
Seed ortholog evalue8.9e-22
Seed eggNOG ortholog306281.AJLK01000198_gene5705
Preferred namemerA
EggNOG free text desc.Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
EggNOG OGs1G198@1117,1JHHX@1189,COG1249@1,COG1249@2
COG Functional cat.C
Best tax levelStigonemataceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51907.12473.1prot_H-elongata_contig51907.12473.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51907 1570..2383 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.8605218-UTR-H-elongata_contig51907:1542..15691622930848.8605218-UTR-H-elongata_contig51907:1542..1569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51907 1543..1569 +
1691679596.4788775-UTR-H-elongata_contig51907:1542..15691691679596.4788775-UTR-H-elongata_contig51907:1542..1569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51907 1543..1569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.876469-CDS-H-elongata_contig51907:1569..16921622930848.876469-CDS-H-elongata_contig51907:1569..1692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51907 1570..1692 +
1691679596.4890647-CDS-H-elongata_contig51907:1569..16921691679596.4890647-CDS-H-elongata_contig51907:1569..1692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51907 1570..1692 +
1622930848.8934636-CDS-H-elongata_contig51907:2236..23831622930848.8934636-CDS-H-elongata_contig51907:2236..2383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51907 2237..2383 +
1691679596.5017745-CDS-H-elongata_contig51907:2236..23831691679596.5017745-CDS-H-elongata_contig51907:2236..2383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51907 2237..2383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51907.12473.1

>prot_H-elongata_contig51907.12473.1 ID=prot_H-elongata_contig51907.12473.1|Name=mRNA_H-elongata_contig51907.12473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MGGDCLNVGCVPSKALISAARVAHTVRNSEAYGVEVTGHVSVMERLRRLR
AGISHNDSAERFTKLGVDVYIGRGEFTSRNTVMVRHVAC*
back to top

mRNA from alignment at H-elongata_contig51907:1543..2383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51907.12473.1 ID=mRNA_H-elongata_contig51907.12473.1|Name=mRNA_H-elongata_contig51907.12473.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=841bp|location=Sequence derived from alignment at H-elongata_contig51907:1543..2383+ (Himanthalia elongata Himel1 dioecious)
CAGGTCGCCCTAATCGAGAGCCATCTCATGGGGGGAGATTGTCTTAACGT GGGGTGCGTCCCTTCGAAGGCTCTCATCTCCGCCGCACGCGTGGCCCACA CCGTTCGGAACAGTGAAGCCTATGGGGTGGAGGTTACCGGGCACGTTTCG GTCAACTTTGGAAAGGCGAGGGAGTTGCAGTAGATAGGACAGGACTTTTT CTTCTGTTTTTCCCCCCTCGACCGGTGAGAAGCGGTTATTATTTTCTTAA AGATGTTTGTATACTGTACTGTAGTGTATTAATAAGTGTAAAATAAAATG TCTCCAGCGCGTGAGGTGGATCGTCGGCATGCTATAGCAGTTGCTTCGAA GTATACTTTGAAGCATAACATTTTCCGCTTGATAATGTCCCAACATCTAC AGGGTTTAATTTACAACTGCCATAAAAAAATAACGCTTTTGATTTGCTTG TGTTTAACGTAATTAAGGCGCTGCACACGTGGTAGTAATGGGCTGTGTGA GACTAAGAAGGAAGTCAGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCGACAGGGACACCCACAACCCCCCTGCGCGGGGG GCGGGCCCAACAACANNNNNNNNNNGTGAGACTAAGAAGGAAGTCAGACC CCCCCCCCCCCTTCACCTCCCAAATCTTGACACGCCGGTCACAGGTAATG GAACGCCTTCGACGCCTGAGGGCCGGGATCTCTCACAATGACAGCGCCGA GCGCTTCACGAAGTTGGGTGTGGACGTCTACATCGGCCGCGGGGAGTTCA CGTCGCGCAACACGGTCATGGTGAGGCACGTCGCTTGCTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51907:1543..2383+

>mRNA_H-elongata_contig51907.12473.1 ID=mRNA_H-elongata_contig51907.12473.1|Name=mRNA_H-elongata_contig51907.12473.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig51907:1543..2383+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGGAGATTGTCTTAACGTGGGGTGCGTCCCTTCGAAGGCTCTCAT
CTCCGCCGCACGCGTGGCCCACACCGTTCGGAACAGTGAAGCCTATGGGG
TGGAGGTTACCGGGCACGTTTCGATGGGGGGAGATTGTCTTAACGTGGGG
TGCGTCCCTTCGAAGGCTCTCATCTCCGCCGCACGCGTGGCCCACACCGT
TCGGAACAGTGAAGCCTATGGGGTGGAGGTTACCGGGCACGTTTCGGTAA
TGGAACGCCTTCGACGCCTGAGGGCCGGGATCTCTCACAATGACAGCGCC
GAGCGCTTCACGAAGTTGGGTGTGGACGTCTACATCGGCCGCGGGGAGTT
CACGTCGCGCAACACGGTCATGGTGAGGCACGTCGCTTGCTGAGTAATGG
AACGCCTTCGACGCCTGAGGGCCGGGATCTCTCACAATGACAGCGCCGAG
CGCTTCACGAAGTTGGGTGTGGACGTCTACATCGGCCGCGGGGAGTTCAC
GTCGCGCAACACGGTCATGGTGAGGCACGTCGCTTGCTGA
back to top